Alignment Contig 11177

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF045C14+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGGGTTCAAAAGAAAGCTT
rJMFF044D06+ ACCCTGGAGAGTTTTTTTTTTTTTTTTGGGGTTCAAA-GAAAGCTT
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGGGTTCAAAAGAAAGCTT

. : . : . : . : . : . :
rJMFF045C14+ TAAGATAGCAGTTGGATTACAGTGCAATATATCACCATTACAGATGAAACAAAGAATTAA
rJMFF044D06+ TAAGATAGCAGTTGGATTACAGTGCAATATATCACCATTACAGATGAAACAAAGAATTAA
____________________________________________________________
consensus TAAGATAGCAGTTGGATTACAGTGCAATATATCACCATTACAGATGAAACAAAGAATTAA

. : . : . : . : . : . :
rJMFF045C14+ AAACATAGTTAAGCAGTCAAACTCATTTGATTAGGGGTCTCTAGCAAACATGATATAGAT
rJMFF044D06+ AAACATAGTTAAGCAGTCAAACTCATTTGATTAGGGGTCTCTAGCAAACATGATATAGAT
____________________________________________________________
consensus AAACATAGTTAAGCAGTCAAACTCATTTGATTAGGGGTCTCTAGCAAACATGATATAGAT

. : . : . : . : . : . :
rJMFF045C14+ TTGGGTAGAATAAAGTAAAGAGATAAAATATCATAATAATACCACAGAACAAAGAGAAAA
rJMFF044D06+ TTGGGTAGAATAAAGTAAAGAGATAAAATATCATAATAATACCACAGAACAAAGAGAAAA
rJMSF039E04+ GGGTAGAATAAAGTAAAGAGATAAAATATCATAATAATACCACAGAACAAAGAGAAAA
____________________________________________________________
consensus TTGGGTAGAATAAAGTAAAGAGATAAAATATCATAATAATACCACAGAACAAAGAGAAAA

. : . : . : . : . : . :
rJMFF045C14+ ATTATATGAAATACAGGCATGGCCTTTCAAAATTTAAGATGTAGCTCACAGTATCATTCT
rJMFF044D06+ ATTATATGAAATACAGGCATGGCCTTTCAAAATTTAAGATGTAGCTCACAGTATCATTCT
rJMSF039E04+ ATTATATGAAATACAGGCATGGCCTTTCAAAATTTAAGATGTAGCTCACAGTATCATTCT
rJMSF029L06+ TCT
____________________________________________________________
consensus ATTATATGAAATACAGGCATGGCCTTTCAAAATTTAAGATGTAGCTCACAGTATCATTCT

. : . : . : . : . : . :
rJMFF045C14+ TCATTTTCAGCCTTTGACTTTTTCTTTTTCCTTTTACCTTCAGTAGCTGTTTCAACTTCC
rJMFF044D06+ TCATTTTCAGCCTTTGACTTTTTCTTTTTCCTTTTACCTTCAGTAGCTGTTTCAACTTCC
rJMSF039E04+ TCATTTTCAGCCTTTGACTTTTTCTTTTTCCTTTTACCTTCAGTAGCTGTTTCAACTTCC
rJMSF029L06+ TCATTTTCAGCCTTTGACTTTTTCTTTTTCCTTTTACCTTCAGTAGCTGTTTCAACTTCC
____________________________________________________________
consensus TCATTTTCAGCCTTTGACTTTTTCTTTTTCCTTTTACCTTCAGTAGCTGTTTCAACTTCC

. : . : . : . : . : . :
rJMFF045C14+ TCTCCCTCTTTCTTACTCTTTTTTTTCTTCTTTTTTGTACTTCCATCCTCATCTCCGGTT
rJMFF044D06+ TCTCCCTCTTTCTTACTCTTTTTTTTCTTCTTTTTTGTACTTCCATCCTCATCTCCGGTT
rJMSF039E04+ TCTCCCTCTTTCTTACTCTTTTTTTTCTTCTTTTTTGTACTTCCATCCTCATCTCCGGTT
rJMSF029L06+ TCTCCCTCTTTCTTACTCTTTTTTTTCTTCTTTTTTGTACTTCCATCCTCATCTCCGGTT
____________________________________________________________
consensus TCTCCCTCTTTCTTACTCTTTTTTTTCTTCTTTTTTGTACTTCCATCCTCATCTCCGGTT

. : . : . : . : . : . :
rJMFF045C14+ CCATTCATACCATTTGCATTTTCTGCACCTGTGTTGTTTTGCTCCTCTTCTGCTTTTCGC
rJMFF044D06+ CCATTCATACCATTTGCATTTTCTGCACCTGTGTTGTTTTGCTCCTCTTCTGCTTTTCGC
rJMSF039E04+ CCATTCATACCATTTGCATTTTCTGCACCTGTGTTGTTTTGCTCCTCTTCTGCTTTTCGC
rJMSF029L06+ CCATTCATACCATTTGCATTTTCTGCACCTGTGTTGTTTTGCTCCTCTTCTGCTTTTCGC
____________________________________________________________
consensus CCATTCATACCATTTGCATTTTCTGCACCTGTGTTGTTTTGCTCCTCTTCTGCTTTTCGC

. : . : . : . : . : . :
rJMFF045C14+ TTCTCCTTTTTCTTCTTCTTTGGTTCTTCAGATGCATCACCATTTGTATTACCAAGTTTA
rJMFF044D06+ TTCTCCTTTTTCTTCTTCTTTGGTTCTTCAGATGCATCACCATTTGTATTACCAAGTTTA
rJMSF039E04+ TTCTCCTTTTTCTTCTTCTTTGGTTCTTCAGATGCATCACCATTTGTATTACCAAGTTTA
rJMSF029L06+ TTCTCCTTTTTCTTCTTCTTTGGTTCTTCAGATGCATCACCATTTGTATTACCAAGTTTA
____________________________________________________________
consensus TTCTCCTTTTTCTTCTTCTTTGGTTCTTCAGATGCATCACCATTTGTATTACCAAGTTTA

. : . : . : . : . : . :
rJMFF045C14+ TCTTCTTCCATGGGTTCACTATCCTCCACAGCCTTGGATTTCTTTTTCTTGCTTTTCTTT
rJMFF044D06+ TCTTCTTCCATGGGTTCACTATCCTCCACAGCCTTGGATTTCTTTTTCTTGCTTTTCTTT
rJMSF039E04+ TCTTCTTCCATGGGTTCACTATCCTCCACAGCCTTGGATTTCTTTTTCTTGCTTTTCTTT
rJMSF029L06+ TCTTCTTCCATGGGTTCACTATCCTCCACAGCCTTGGATTTCTTTTTCTTGCTTTTCTTT
____________________________________________________________
consensus TCTTCTTCCATGGGTTCACTATCCTCCACAGCCTTGGATTTCTTTTTCTTGCTTTTCTTT

. : . : . : . : . : . :
rJMFF045C14+ GTGGACGACTTGCTAGGTGTTGTGTCCACATCCATAGAAGTATCGGCATCTTTACTTT
rJMFF044D06+ GTGGACGACTTGCTAGGTGTTGTGTCCACATCCATAGAAGTATCGGCATCTTTACTTT
rJMSF039E04+ GTGGACGACTTGCTAGGTGTTGTGTCCACATCCATAGAAGTATCGGCATCTTTACTTTGG
rJMSF029L06+ GTGGACGACTTGCTAGGTGTTGTGTCCACATCCATAGAAGTATCGGCATCTTTACTTTGG
____________________________________________________________
consensus GTGGACGACTTGCTAGGTGTTGTGTCCACATCCATAGAAGTATCGGCATCTTTACTTTGG

. : . : . : . : . : . :
rJMSF039E04+ AAATTTTCTATAGCAACTTTCATCACATCTATGTTTTTGCGCGGTGCAACGCCCTTATCA
rJMSF029L06+ AAATTTTCTATAGCAACTTTCATCACATCTATGTTTTTGCGCGGTGCAACACCCTTATCA
____________________________________________________________
consensus AAATTTTCTATAGCAACTTTCATCACATCTATGTTTTTGCGCGGTGCAACACCCTTATCA

. : . : . : . : . : . :
rJMSF039E04+ TAAAAATCAAGCCGCTCCTCAACTTGTTCACGGAGTTTCTCTCCAAAGGTTGTAGTATTG
rJMSF029L06+ TAAAAATCAAGCCGCTCCTCAACTTGTTCACGGAGTTTCTCTCCAAAGGGTGTAGTATTG
____________________________________________________________
consensus TAAAAATCAAGCCGCTCCTCAACTTGTTCACGGAGTTTCTCTCCAAAGGGTGTAGTATTG

. : . : . : . : . : . :
rJMSF039E04+ TTATCTAAGAAACAGTCCAAGCGCGAAGCAATAGAGCATTTGTTTGCAAGATATCGTGCC
rJMSF029L06+ TTATCTAAGAAACAGTCCAGGCGCGAAGCAATAGAGCA
____________________________________________________________
consensus TTATCTAAGAAACAGTCCAAGCGCGAAGCAATAGAGCATTTGTTTGCAAGATATCGTGCC

. : . : . : . : . : . :
rJMSF039E04+ ATTCTCCCTTTGTTTTTAGCAGAAGCACGGCCTATGAAAGAAGAATGAAATATAAGACCA
____________________________________________________________
consensus ATTCTCCCTTTGTTTTTAGCAGAAGCACGGCCTATGAAAGAAGAATGAAATATAAGACCA

. : . : . : . : . : . :
rJMSF039E04+ TATTTGGGTGTGTTCCCTTTGGTCTTCAAGGCCCTAAAGAGTGCCTTCTCAGCACCGAGT
____________________________________________________________
consensus TATTTGGGTGTGTTCCCTTTGGTCTTCAAGGCCCTAAAGAGTGCCTTCTCAGCACCGAGT

. : . : . : . : . : . :
rJMSF039E04+ ATCTGAAGGGTAGAAGAAGGGCATTTGGCAAGGTTTGGTAAGACTACCAGCA
____________________________________________________________
consensus ATCTGAAGGGTAGAAGAAGGGCATTTGGCAAGGTTTGGTAAGACTACCAGCA