Alignment Contig 11172

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044H13+ CCTTATGGCGGACCACCCTGGAGAGTTTTTTTTTTTTTTTTGTATATATGTATTGCATTG
____________________________________________________________
consensus CCTTATGGCGGACCACCCTGGAGAGTTTTTTTTTTTTTTTTGTATATATGTATTGCATTG

. : . : . : . : . : . :
rJMFF044H13+ TATATAAAACTGTAATCACCCAATTTCTTTTGXXXXXXXXXXXXXXXXXXATAATAAATT
JMFS031D08- ATAATAAATT
JMFS048B06- ATAATAAATT
____________________________________________________________
consensus TATATAAAACTGTAATCACCCAATTTCTTTTGNNNNNNNNNNNNNNNNNNATAATAAATT

. : . : . : . : . : . :
rJMFF044H13+ TAAACAATTAAACAAGAGATTATTGGGTGATTAACTATAGTTTGAAGGGTTATGATTATT
JMFS031D08- TAAACAATTAAACAAGAGATTATTGGGTGATTAACTATAGTTTGAAGGGTTATGATTATT
JMFS048B06- TAAACAATTAAACAAGAGATTATTGGGTGATTAACTATAGTTTGAAGGGTTATGATTATT
rJMSF036H12+ GGTGATTAACTATAGTTTGAAGGGTTATGATTATT
rJMSF032A15+ TTGAAGGGTTATGATTATT
rJMSF042F23+ TGAAGGGTTATGATTATT
rJMSF009J13+ GAAGGGTTATGATTATT
____________________________________________________________
consensus TAAACAATTAAACAAGAGATTATTGGGTGATTAACTATAGTTTGAAGGGTTATGATTATT

. : . : . : . : . : . :
rJMFF044H13+ TTAAGTCCTCCTAAATACATAAACAACAGAAAATTAATCTCATATTTTTT-GTTAGCACT
JMFS031D08- TTAAGTCCTCCTAAATACATAAACAACAGAAAATTAATCTCATATTTTTT-GTTAGCACT
JMFS048B06- TTAAGTCCTCCTAAATACATAAACAACAGAAAATTAATCTCATATTTTTT-GTTAGCACT
rJMSF036H12+ TTAAGTCCTCCTAAATA-ATAAACAACAGAAAATTAATCTCATATTTTTT-GTTAGCACT
rJMSF032A15+ TTAAGTCCTCCTANNTACATAAACAACAGAAAATTANNCTCATATTTTTT-GTTAGCACT
rJMSF042F23+ TTAAGTCCTCCTAAATACATAAACAACAGAAAATTAATCTCATATTTTTT-GTTAGCACT
rJMSF009J13+ TTAAGTCCTCCTAAATACATAAACAACAGAAAATTAATCTCATATTTTTTTGTTAGCACT
____________________________________________________________
consensus TTAAGTCCTCCTAAATACATAAACAACAGAAAATTAATCTCATATTTTTT-GTTAGCACT

. : . : . : . : . : . :
rJMFF044H13+ AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT
JMFS031D08- AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT
JMFS048B06- AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT
rJMSF036H12+ AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT
rJMSF032A15+ AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT
rJMSF042F23+ AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT
rJMSF009J13+ AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT
____________________________________________________________
consensus AGGAATTCCAGTCTGCAACTATAAAAAGCTTGTCATTATCTCTTATCACATCTATGGAGT

. : . : . : . : . : . :
rJMFF044H13+ CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT
JMFS031D08- CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT
JMFS048B06- CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT
rJMSF036H12+ CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT
rJMSF032A15+ CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT
rJMSF042F23+ CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT
rJMSF009J13+ CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT
____________________________________________________________
consensus CAATTATTGCTCCTTCTTCATCTGTCAAGGATGAATCTGTTGCATCAAATCCAAGCTTCT

. : . : . : . : . : . :
rJMFF044H13+ CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT
JMFS031D08- CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT
JMFS048B06- CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT
rJMSF036H12+ CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT
rJMSF032A15+ CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT
rJMSF042F23+ CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT
rJMSF009J13+ CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT
____________________________________________________________
consensus CACCTGCGATGCTGATCAGCTCTGCTATTGTTTCTGGCAGCTTAATTAGCCTTCCGGGCT

. : . : . : . : . : . :
rJMFF044H13+ CGGGGCATTGCGTTTCTCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG
JMFS031D08- CGGGGCATTGCGTTTCTCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG
JMFS048B06- CGGGGCANTGCGTTTCTCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG
rJMSF036H12+ CGGGGCATTGCGTTT-TCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG
rJMSF032A15+ CGGGGCATTGCGTTTCTCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG
rJMSF042F23+ CGGGGCATTGCGTTTCTCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG
rJMSF009J13+ CGGGGCATTGCGTTTCTCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG
____________________________________________________________
consensus CGGGGCATTGCGTTTCTCGCCTCGTTGCAGGGTGGCCTCTGTAAATGCTAACTCTGATAG

. : . : . : . : . : . :
rJMFF044H13+ AGCACTGCTGGGGCATAAAACTGCTGTTCTGGTGATCATCCTTAGCCCACTTTGAGGCTG
JMFS031D08- AGCACTGCTGGGGCATAGAACTGCTGTTCTGGTGATCA
JMFS048B06- AGCACTGCTGGGGCATAGAACTGCT
rJMSF036H12+ AGCACTGCTGGGGCATAGAACTGCTGTTCTGGTGATCATCCTTAGCCCACTTTGAGGCTG
rJMSF032A15+ AGCACTGCTGGGGCATAGAACTGCTGTTCTGGTGATCATCCTTAGCCCACTTTGAGGCTG
rJMSF042F23+ AGCACTGCTGGGGCATAGAACTGCTGTTCTGGTGATCATCCTTAGCCCACTTTGAGGCTG
rJMSF009J13+ AGCACTGCTGGGGCATAGAACTGCTGTTCTGGTGATCATCCTTAGCCCACTTTGAGGCTG
____________________________________________________________
consensus AGCACTGCTGGGGCATAGAACTGCTGTTCTGGTGATCATCCTTAGCCCACTTTGAGGCTG

. : . : . : . : . : . :
rJMFF044H13+ CTTCATGGAGAATTGTGTTAGGCATTGCAATCCTGTGCCCGAGTTCTCGTTTTTGCAGAA
rJMSF036H12+ CTTCATGGAGAATTGTGTTAGGCATTGCAATCCTGTGCCCGAGTTCTCGTTTTTGCAGAA
rJMSF032A15+ CTTCATGGAGAATTGTGTTAGGCATTGCAATCCTGTGCCCGAGTTCTCGTTTTTGCANAA
rJMSF042F23+ CTTCATGGAGAATTGTGTTAGGCATTGCAATCCTGTGCCCGAGTTCTCGTTTTTGCAGAA
rJMSF009J13+ CTTCATGGAGAATTGTGTTAGGCATTGCAATCCTGTGCCCGAGTTCTCGTTTTTGCAGAA
____________________________________________________________
consensus CTTCATGGAGAATTGTGTTAGGCATTGCAATCCTGTGCCCGAGTTCTCGTTTTTGCAGAA

. : . : . : . : . : . :
rJMFF044H13+ CTTCGGTTAAGTCTAGTGGTGCCAAGTTGAGCT
rJMSF036H12+ CTTCGGTTAAGTCTAGTGGTGCCAAGTTGAGCTTAACAGCATCATCAATCTCTGCACCAT
rJMSF032A15+ CTTCGGTTAAGTCTAGTGGTGCCAAGTTGAGCTTAACAGCATCATCAATCTCTGCACCAT
rJMSF042F23+ CTTCGGTTAAGTCTAGTGGTGCCAAGTTGAGCTTAACAGCATCATCAATCTCTGCACCAT
rJMSF009J13+ CTTCGGTTAAGTCTAGTGGTGCCAAGTTGAGCTTAACAGCATCATCAATCTCTGCACCAT
____________________________________________________________
consensus CTTCGGTTAAGTCTAGTGGTGCCAAGTTGAGCTTAACAGCATCATCAATCTCTGCACCAT

. : . : . : . : . : . :
rJMSF036H12+ TCATCACCAGAAGCTTTATCATGTCTGCCTGGTTTTCCTCCATCGCGGCTTGAATGGCGG
rJMSF032A15+ TCATCACCAGAAGCTTTATCATGTCTGCCTGGTTTTCCTCCATCGCGGCTTGAATGGCGG
rJMSF042F23+ TCATCACCAGAAGCTTTATCATGTCTGCCTGGTTTTCCTCCATCGCGGCTTGAATGGCGG
rJMSF009J13+ TCATCACCAGAAGCTTTATCATGTCTGCCTGGTTTTCCTCCATCGCGGCTTGAATGGCGG
____________________________________________________________
consensus TCATCACCAGAAGCTTTATCATGTCTGCCTGGTTTTCCTCCATCGCGGCTTGAATGGCGG

. : . : . : . : . : . :
rJMSF036H12+ TGGATCCATGGCGGTCCTTTGAGTCCACGTGCAGCCCGTGCTTCAGAAGCTCCTGCATTA
rJMSF032A15+ TGGATCCATGGCGGTCCTTTGANTCCACGTGCAGCCCGTGCTTCAGAAGCTCCTGCATTA
rJMSF042F23+ TGGATCCATGGCGGTCCTTTGAGTCCACGTGCAGCCCGTGCTTCAGAAGCTCCTGCATTA
rJMSF009J13+ TGGATCCATGGCGGTCCTTTGAGTCCACGTGCAGCCCGTGCTTCAGAAGCTCCTGCATTA
____________________________________________________________
consensus TGGATCCATGGCGGTCCTTTGAGTCCACGTGCAGCCCGTGCTTCAGAAGCTCCTGCATTA

. : . : . : . : . : . :
rJMSF036H12+ CGGATGAATCGTTCATCTTTGCTGCTTTGCACAGGAGATCGCCCGCCACGTAGGGGTCAG
rJMSF032A15+ CGGATGAATCGTTCATCTTTGCTGCTTTGCACAGGAGATCGCCCGCCACGTA
rJMSF042F23+ CGGATGAATCGTTCATCTTTGCTGCTTTGCACAGGAGATCGCCCGCCACGTANGGGTCAG
rJMSF009J13+ CGGATGAATCGTTCATCTTTGCTGCTTTGCACAGGAGATCGCCCGCCACGTA
____________________________________________________________
consensus CGGATGAATCGTTCATCTTTGCTGCTTTGCACAGGAGATCGCCCGCCACGTAGGGGTCAG

. : . : . : . : . : . :
rJMSF036H12+ AGATGGAAGCCCAGTGGTACAGAATGCTGAATATGGAATGCTCTTTTGCTGCTATGGCAT
rJMSF042F23+ AGATGGAAGCCCAGTGGTACAGAATGCTGAATATGGAATGCTCTTTTGCTGCTATGGCAT
____________________________________________________________
consensus AGATGGAAGCCCAGTGGTACAGAATGCTGAATATGGAATGCTCTTTTGCTGCTATGGCAT

. : . : . : . : . : . :
rJMSF036H12+ CCCAAAGTGCTGTGTTGCCTTCCATATCTTTCAANGNATGTTACAGCCATGTTTAAGGAG
rJMSF042F23+ CCCAAAGTGCTGTGTT
____________________________________________________________
consensus CCCAAAGTGCTGTGTTGCCTTCCATATCTTTCAANGNATGTTACAGCCATGTTTAAGGAG

. : . : . : . : . : . :
rJMSF036H12+ CACNATAACACACTCTNCAGGCCNTTTGAGGCTGCA
____________________________________________________________
consensus CACNATAACACACTCTNCAGGCCNTTTGAGGCTGCA