Alignment Contig 11147

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF041H09+ TTTTTTTTTTTTTTGGGTACAAATTAAGTAGCATTATAACTCCCCTTACATCAATCAAGA
rJMFF049F12+ ACAAATTAAGTAGCATTATAACTCCCCTTACATCAATCAAGA
rJMFF050H09+ ACAAATTAAGTAGCATTATAACTCCCCTTACATCAATCAAGA
rJMFF049C19+ ACAAATTAAGTAGCATTATAACTCCCCTTACATCAATCAAGA
rJMFF046I17+ GCATTATAACTCCCCTTACATCAATCAAGA
rJMFF031N13+ ATTATAACTCCCCTTACATCAATCAAGA
rJMFF009O09+ AAGA
rJMSF050M12+ AGA
____________________________________________________________
consensus TTTTTTTTTTTTTTGGGTACAAATTAAGTAGCATTATAACTCCCCTTACATCAATCAAGA

. : . : . : . : . : . :
rJMFF041H09+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMFF049F12+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMFF050H09+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMFF049C19+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMFF046I17+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMFF031N13+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMFF009O09+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMSF050M12+ TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMSF036M14+ AAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC
rJMSF037O08+ AGCACGCATGAGGAACATTCATCCNAGATAACATTTACATGGCTGCAATCTGCATGC
____________________________________________________________
consensus TCAAGCACGCATGAGGAACATTCATCCAAGATAACATTTACATGGCTGCAATCTGCATGC

. : . : . : . : . : . :
rJMFF041H09+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMFF049F12+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMFF050H09+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMFF049C19+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMFF046I17+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMFF031N13+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMFF009O09+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMSF050M12+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMSF036M14+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
rJMSF037O08+ ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA
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consensus ATGCATGAACTAAACACCATTTTTGTTCCTTCACTAAACTCCCTAACTCGTCGCGTTACA

. : . : . : . : . : . :
rJMFF041H09+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMFF049F12+ TGACAACAAAAGATTACTAGTTCCACCATTATTGGGTCCATATTTGACTCTTAAAAACAA
rJMFF050H09+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMFF049C19+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMFF046I17+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMFF031N13+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMFF009O09+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMSF050M12+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMSF036M14+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMSF037O08+ TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
rJMSF041L14+ TTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA
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consensus TGACAACAAAAGATTACTAGTTCCACCATTATTGTGTCCATATTTGACTCTTAAAAACAA

. : . : . : . : . : . :
rJMFF041H09+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMFF049F12+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGGGTAATTCCCTCATTATCCGAAAATA
rJMFF050H09+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMFF049C19+ TAATCTACTGTAATTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMFF046I17+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMFF031N13+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMFF009O09+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMSF050M12+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMSF036M14+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMSF037O08+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
rJMSF041L14+ TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA
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consensus TAATCTACTGTCGTTGGAGACAAGTATGTGACTGTGTAATTCCCTCATTATCCGAAAATA

. : . : . : . : . : . :
rJMFF041H09+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMFF049F12+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMFF050H09+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMFF049C19+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMFF046I17+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMFF031N13+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMFF009O09+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMSF050M12+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMSF036M14+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMSF037O08+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
rJMSF041L14+ TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT
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consensus TGAAAAAAGAATACGGAGTAATGATGATCGGGCGTTTCCTTCTCCAGCAGGACTCGCGGT

. : . : . : . : . : . :
rJMFF041H09+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC
rJMFF049F12+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGG
rJMFF050H09+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC
rJMFF049C19+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAAT
rJMFF046I17+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCAATGACGTGATTTGGAATTTC
rJMFF031N13+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC
rJMFF009O09+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCAATGACGTGATTTGGAATTTC
rJMSF050M12+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC
rJMSF036M14+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC
rJMSF037O08+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC
rJMSF041L14+ TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC
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consensus TGTGTGAACTTATATGAACGCCTCTCAAGCCCGGCTATCACTGACGTGATTTGGAATTTC

. : . : . : . : . : . :
rJMFF041H09+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMFF050H09+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMFF046I17+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMFF031N13+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMFF009O09+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMSF050M12+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMSF036M14+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMSF037O08+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
rJMSF041L14+ GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA
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consensus GCTCTGGTTGTCGAGTGGCATGTACTGCGCCATTATGGCCCTGATCTCCGTGTCCATGTA

. : . : . : . : . : . :
rJMFF041H09+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
rJMFF050H09+ TGACCGCAACCTATATTTGTATAC
rJMFF046I17+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
rJMFF031N13+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
rJMFF009O09+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
rJMSF050M12+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
rJMSF036M14+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
rJMSF037O08+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
rJMSF041L14+ TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT
____________________________________________________________
consensus TGACCGCAACCTATATTTGTATACGAGATATGCCCCACCAGCAACCACGCCCAATCCTAT

. : . : . : . : . : . :
rJMFF041H09+ CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA
rJMFF046I17+ CANAATGACCCACACGGCAGCCCATGC
rJMFF031N13+ CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA
rJMFF009O09+ CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA
rJMSF050M12+ CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA
rJMSF036M14+ CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA
rJMSF037O08+ CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA
rJMSF041L14+ CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA
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consensus CAAAATGACCCACACGGCAGCCCATGCAGATTTGACTTGGGTAGCTCTCTTACTTATGCA

. : . : . : . : . : . :
rJMFF041H09+ GGTATCGTGATCTCTGATATACAACAGGCCAT
rJMFF031N13+ GGTATCGTGATCTCTGATATACAACAGGCCATTACTGCAAGTGCAGTCGTAACTACCCCA
rJMFF009O09+ GGTATCGTGATCTCTGATATACAACAGGCCATTACTGCAAGTGCAGTCGTAACTACCCCA
rJMSF050M12+ GGTATCGTGATCTCTGATATACAACAGGCCATTACTGCAAGTGCAGTCGTAACTACCCCA
rJMSF036M14+ GGTATCGTGATCTCTGATATACAACAGGCCATTACTGCAAGTGCAGTCGTAACTACCCCA
rJMSF037O08+ GGTATCGTGATCTCTGATATACAACAGGCCATTACTGCAAGTGCAGTCGTAACTACCCCA
rJMSF041L14+ GGTATCGTGATCTCTGATATACAACAGGCCATTACTGCAAGTGCAGTCGTAACTACCCCA
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consensus GGTATCGTGATCTCTGATATACAACAGGCCATTACTGCAAGTGCAGTCGTAACTACCCCA

. : . : . : . : . : . :
rJMFF031N13+ GGTATTCTTGCAGCTGCATTCAGGGCACTGGCAGGCCGTCTTGTCTTTGCATTCATCAAT
rJMFF009O09+ GGTATTCTTGCAGCTGCATTCAGGGCACTGGCAGGCCGTCTTGTCTTTGCATTCATCAAT
rJMSF050M12+ GGTATTCTTGCAGCTGCATTCAGGGCACTGGCAGGCCGTCTTGTCTTTGCATTCATCAAT
rJMSF036M14+ GGTATTCTTGCAGCTGCATTCAGGGCACTGGCAGGCCGTCTTGTCTTTGCATTCATCAAT
rJMSF037O08+ GGTATTCTTGCAGCTGCATTCAGGGCACTGGCAGGCCGTCTTGTCTTTGCATTCATCAAT
rJMSF041L14+ GGTATTCTTGCAGCTGCATTCAGGGCACTGGCAGGCCGTCTTGTCTTTGCATTCATCAAT
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consensus GGTATTCTTGCAGCTGCATTCAGGGCACTGGCAGGCCGTCTTGTCTTTGCATTCATCAAT

. : . : . : . : . : . :
rJMFF031N13+ ATCTTCACAACTCTTACCATCGC
rJMFF009O09+ ATCTTCACAACTCTTACCATCGCCT
rJMSF050M12+ ATCTTCACAACTCTTACCATCGCCTTTGAATCCCGGAGGGCAAGTGCACTTGCCCTCTTC
rJMSF036M14+ ATCTTCACAACTCTTACCATCGCCTTTGAATCCCGGAGGGCAAGTGCACTTGCCCTCTTC
rJMSF037O08+ ATCTTCACAACTCTTACCATCGCCTTTGAATCCC
rJMSF041L14+ ATCTTCACAACTCTTACCATCGCCTTTGAATCCCGGAGGGCAAGTGCACTTGCCCTCTTC
____________________________________________________________
consensus ATCTTCACAACTCTTACCATCGCCTTTGAATCCCGGAGGGCAAGTGCACTTGCCCTCTTC

. : . : . : . : . : . :
rJMSF050M12+ AGAAGGCACACAGGCAGAGTAAGTATGTCCATTTCGAGTT
rJMSF036M14+ AGAAGGCACACAGGCAGAGTAAGTATGTCCATTTCGAGTT
rJMSF041L14+ AGAAGGCACACAGGCAGAGTAAGTATGTCCATTTCGAGTTTCATGCCAGCAACCTCCATT
____________________________________________________________
consensus AGAAGGCACACAGGCAGAGTAAGTATGTCCATTTCGAGTTTCATGCCAGCAACCTCCATT

. : . : . : . : . : . :
rJMSF041L14+ ATTGAGTTGG
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consensus ATTGAGTTGG