Alignment Contig 11131

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF039I24+ TGGCACTTCTTCTACACTTCCATTTAAGACATCAAAAGTACTTTGTCCAACTTGCAAGAC
rJMFF019N22+ TTAAGACATCAAAAGTACTTTGTCCAACTTGCAAGAC
rJMFF020M04+ TCAAAAGTACTTTGTCCAACTTGCAAGAC
rJMFF010H24+ TTAAGACATCAAAAGTACTTTGTCCAACTTGCAAGAC
rJMSF044A23+ CACTTCCATTTAAGACATCAAAAGTACTTTGTCCAACTTGCAAGAC
rJMFF019D09+ TTAAGACATCAAAAGTACTTTGTCCAACTTGCAAGAC
rJMSF023I12+ CACTTCCATTTAAGACATCAAAAGTACTTTGTCCAACTTGCAAGAC
rJMFF022B03+ ACTTGCAAGAC
____________________________________________________________
consensus TGGCACTTCTTCTACACTTCCATTTAAGACATCAAAAGTACTTTGTCCAACTTGCAAGAC

. : . : . : . : . : . :
rJMFF039I24+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMFF019N22+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMFF020M04+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMFF010H24+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMSF044A23+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMFF019D09+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMSF023I12+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMFF022B03+ CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
rJMSF024M20+ ATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA
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consensus CAACATGTCGATCAATCGTCATGAAAAGGAGATGTTTTAACACAGACAACAGGAATGTCA

. : . : . : . : . : . :
rJMFF039I24+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMFF019N22+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMFF020M04+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMFF010H24+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMSF044A23+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMFF019D09+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMSF023I12+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMFF022B03+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
rJMSF024M20+ TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA
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consensus TGGAAAATATATAAACATTCAGTCATTATCTTCATATGGATTTCCTATGCAACATCCTTA

. : . : . : . : . : . :
rJMFF039I24+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMFF019N22+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMFF020M04+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMFF010H24+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMSF044A23+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMFF019D09+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMSF023I12+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMFF022B03+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
rJMSF024M20+ TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA
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consensus TGATGCTCAGAAGTCCCGATCAGGGAACAGAATTGGAGCAACCAGAGACCAGAGAAATAA

. : . : . : . : . : . :
rJMFF039I24+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMFF019N22+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMFF020M04+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMFF010H24+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMSF044A23+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMFF019D09+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMSF023I12+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMFF022B03+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
rJMSF024M20+ AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC
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consensus AGCAGCAGTCACCCACCCAGTCACAACTCTAACCCAAACCGATGCCCATCCAACGTCCAC

. : . : . : . : . : . :
rJMFF039I24+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMFF019N22+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMFF020M04+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMFF010H24+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMSF044A23+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMFF019D09+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMSF023I12+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMFF022B03+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
rJMSF024M20+ CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT
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consensus CAATTTCCCGCTCTCCCCAACAGAGGTCGACCAGCCTGTGAGCAGCATTGCGGAATACAT

. : . : . : . : . : . :
rJMFF039I24+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMFF019N22+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMFF020M04+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMFF010H24+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMSF044A23+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMFF019D09+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMSF023I12+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMFF022B03+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
rJMSF024M20+ GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT
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consensus GCTAGCAAGAGAGAAGATAATGTGGAAGAATGAATATGAATATGTAACAGCCTTTGATTT

. : . : . : . : . : . :
rJMFF039I24+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMFF019N22+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMFF020M04+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMFF010H24+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMSF044A23+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMFF019D09+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMSF023I12+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMFF022B03+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
rJMSF024M20+ CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC
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consensus CTCCATCTCCTCGTGCTCATCCGCCTTGTCTAATGGTAGCAAAGGTTTCCCGCCACCTGC

. : . : . : . : . : . :
rJMFF039I24+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMFF019N22+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMFF020M04+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMFF010H24+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMSF044A23+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMFF019D09+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMSF023I12+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMFF022B03+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
rJMSF024M20+ ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA
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consensus ACGTGGTGAGCTAGGAGGGGAAAGCAAAGTTGTAGAAGATCCAGCACGGACAGCAGAGTA

. : . : . : . : . : . :
rJMFF039I24+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
rJMFF019N22+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
rJMFF020M04+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
rJMFF010H24+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
rJMSF044A23+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTANTGTACCAGTGGAAACAGATTT
rJMFF019D09+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
rJMSF023I12+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
rJMFF022B03+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
rJMSF024M20+ GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT
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consensus GACAACAGATAATACAGTTGTGAGCAGCCCTAGGGTTAGTGTACCAGTGGAAACAGATTT

. : . : . : . : . : . :
rJMFF039I24+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
rJMFF019N22+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
rJMFF020M04+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
rJMFF010H24+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
rJMSF044A23+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCCCTAGGTTCACTGGCAAGTGCACTGT
rJMFF019D09+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
rJMSF023I12+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
rJMFF022B03+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
rJMSF024M20+ TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT
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consensus TGAGTGCTTATGAAGGGCATTGCATTCATAATCCC-TAGGTTCACTGGCAAGTGCACTGT

. : . : . : . : . : . :
rJMFF039I24+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG
rJMFF019N22+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG
rJMFF020M04+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTC
rJMFF010H24+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCTTTCA
rJMSF044A23+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG
rJMFF019D09+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG
rJMSF023I12+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG
rJMFF022B03+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG
rJMSF024M20+ AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG
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consensus AGCAAAGGTATGTGCAGTACAGAGATATAACTGAAGCTGGGAAAATGCTACCCTTCACCG

. : . : . : . : . : . :
rJMFF039I24+ AAGGATGAAGTGTGACTATAGC
rJMFF019N22+ AA
rJMSF044A23+ AAGGATGAAGTGTGACTATAG
rJMFF019D09+ AAGGATGAAGT
rJMSF023I12+ AAGGATGAAGTGTGACTAT
rJMFF022B03+ AANGATGAAGTGTGACTATAGC
rJMSF024M20+ AAGGATGAAGTGTGACTATAGCAAAGGCGAAGATAAAAATAAGAGTCATGACTATNAAGA
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consensus AAGGATGAAGTGTGACTATAGCAAAGGCGAAGATAAAAATAAGAGTCATGACTATNAAGA

. : . : . : . : . : . :
rJMSF024M20+ AAGTGTTTATCCCACAATCTTGTCCAGATGGAGCA
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consensus AAGTGTTTATCCCACAATCTTGTCCAGATGGAGCA