Alignment Contig 11127

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF038I06+ GTACAGTGAATGAGAGTTGTACAATATGCTCTGGAGTCTCATGCTTCCTCACTGAATACG
rJMFF022H02+ GAATGAGAGTTGTACAATATGCTCTGGAGTCTCATGCTTCCTCACTGAATACG
rJMFF049B05+ TCTGGAGTCTCATGCTTCCTCACTGAATACG
rJMFF009O15+ GAATGAGAGTTGTACAATATGCTCTGGAGTCTCATGCTTCCTCACTGAATACG
rJMFF039L11+ GAATGAGAGTTGTACAATATGCTCTGGAGTCTCATGCTTCCTCACTGAATACG
____________________________________________________________
consensus GTACAGTGAATGAGAGTTGTACAATATGCTCTGGAGTCTCATGCTTCCTCACTGAATACG

. : . : . : . : . : . :
rJMFF038I06+ GAATACAGAAAGCAACACTAATGCCTCCAAAGTTTATGCACAGTTTCAAGTTATGCATCA
rJMFF022H02+ GAATACAGAAAGCAACACTAATGCCTCCAAAGTTTATGCACAGTTTCAAGTTATGCATCA
rJMFF049B05+ GAATACAGAAAGCAACACTAATGCCTCCAAAGTTTATGCACAGTTTCAAGTTATGCATCA
rJMFF009O15+ GAATACAGAAAGCAACACTAATGCCTCCAAAGTTTATGCACAGTTTCAAGTTATGCATCA
rJMFF039L11+ GAATACAGAAGGCAACACTAATGCCTCCAAAGTTTATGCACAGTTTCAAGTTATGCATCA
rJMFF002M06+ AGTTATGCATCA
rJMSF039E23+ TTATGCATCA
____________________________________________________________
consensus GAATACAGAAAGCAACACTAATGCCTCCAAAGTTTATGCACAGTTTCAAGTTATGCATCA

. : . : . : . : . : . :
rJMFF038I06+ CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG
rJMFF022H02+ CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG
rJMFF049B05+ CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG
rJMFF009O15+ CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG
rJMFF039L11+ CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG
rJMFF002M06+ CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG
rJMSF039E23+ CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG
____________________________________________________________
consensus CATCATATAGGACAGATGACCAATAATTATTCACAAAATTTCTCCATTGGAGACTTATTG

. : . : . : . : . : . :
rJMFF038I06+ CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA
rJMFF022H02+ CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA
rJMFF049B05+ CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA
rJMFF009O15+ CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA
rJMFF039L11+ CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA
rJMFF002M06+ CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA
rJMSF039E23+ CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA
rJMSF023N21+ AGCGTTTTGAGTAAATTGA
____________________________________________________________
consensus CGACGGTAAAGACACTGGATAAATTAGTTTTCTTGAGTCACAGCGTTTTGAGTAAATTGA

. : . : . : . : . : . :
rJMFF038I06+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
rJMFF022H02+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
rJMFF049B05+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
rJMFF009O15+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
rJMFF039L11+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
rJMFF002M06+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
rJMSF039E23+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
rJMSF023N21+ TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG
____________________________________________________________
consensus TTAATACACGCGCGCCTTAGGTGGAAATGTTTCAATTTCATCGTCCAATGTGTTCATGTG

. : . : . : . : . : . :
rJMFF038I06+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT
rJMFF022H02+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT
rJMFF049B05+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTCTCAT
rJMFF009O15+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT
rJMFF039L11+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT
rJMFF002M06+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT
rJMSF039E23+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT
rJMSF023N21+ AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT
____________________________________________________________
consensus AACTGGCCTGTAGTCCAGCCTTACTTTCTCATTCTCCCAGTATCCTAATGTGTGTTTCAT

. : . : . : . : . : . :
rJMFF038I06+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
rJMFF022H02+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
rJMFF049B05+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
rJMFF009O15+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
rJMFF039L11+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
rJMFF002M06+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
rJMSF039E23+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
rJMSF023N21+ CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT
____________________________________________________________
consensus CCACTTCTCGTCATCTCTTTTTGTAAAATCTTCACGGGCATGAGCGCCTCTGCTCTCTTT

. : . : . : . : . : . :
rJMFF038I06+ TCTAGCTTCAGCAGAGTGCATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC
rJMFF022H02+ TCTAGCTTCAGCAGAGTGNATTGTGATACAAGCATTA
rJMFF049B05+ TCTAGCTTCAGCAGAGTGCATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC
rJMFF009O15+ TCTAGCTTCAGCAGAGTGCATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC
rJMFF039L11+ TCTAGCTTCAGCAGAGTGCATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC
rJMFF002M06+ TCTAGCTTCAGCAGAGTGCATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC
rJMSF039E23+ TCTAGCTTCAGCAGAGTGCATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC
rJMSF023N21+ TCTAGCTTCAGCAGAGTACATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC
____________________________________________________________
consensus TCTAGCTTCAGCAGAGTGCATTGTGATACAAGCATTAATCAACAAGTTTTCCAACTCAAC

. : . : . : . : . : . :
rJMFF038I06+ AGTCTCTATAAGATCTGAATTCCATATCAAACTGCGATCTTCCACCTTCACGTCGTGGAA
rJMFF049B05+ AGTCTCTATAAGATCTGAATTCCATATCANACTGCGATCTTCCACCTTCACGTCGTGGAA
rJMFF009O15+ AGTCTCTATAAGATCTGAATTCCATATCAAACTGCGATCTTCCACCTTCACGTCGTGGAA
rJMFF039L11+ AGTCTCTATAAGATCTGAATTCCATATCAAACTGCGATCTTCCACCTTCACGTCGTGGAA
rJMFF002M06+ AGTCTCTATAAGATCTGAATTCCATATCAAACTGCGATCTTCCACCTTCACGTCGTGGAA
rJMSF039E23+ AGTCTCTATAAGATCTGAATTCCATATCAAACTGCGATCTTCCACCTTCACGTCGTGGAA
rJMSF023N21+ AGTCTCTATAAGATCTGAATTCCATATCAAACTGCGATCTTCCACCTTCACGTCGTGGAA
____________________________________________________________
consensus AGTCTCTATAAGATCTGAATTCCATATCAAACTGCGATCTTCCACCTTCACGTCGTGGAA

. : . : . : . : . : . :
rJMFF038I06+ GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA
rJMFF049B05+ GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA
rJMFF009O15+ GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA
rJMFF039L11+ GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA
rJMFF002M06+ GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA
rJMSF039E23+ GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA
rJMSF023N21+ GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA
____________________________________________________________
consensus GCTCTCCCATGCGTTGTCAATTAACTTACAACCTTCCTCTAAAGTCTCTTGTGTGCGGAA

. : . : . : . : . : . :
rJMFF038I06+ AACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAATCGAATGTTTGAAGTGGGCAA
rJMFF049B05+ AACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAAT
rJMFF009O15+ AACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAATCGAATGTTTGAAGTGGGCAA
rJMFF039L11+ AACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAATCGAATGTTTGAAGTGGGCAA
rJMFF002M06+ GACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAATCGAATGTTTGAAGTGGGCAA
rJMSF039E23+ AACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAATCGAATGTTTGAAGTGGGCAA
rJMSF023N21+ AACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAATCGAATGTTTGAAGTGGGCAA
____________________________________________________________
consensus AACAGCTGCATTGTTTTGCATTACTCTTTGCATGTTCAATCGAATGTTTGAAGTGGGCAA

. : . : . : . : . : . :
rJMFF038I06+ TGAACCATTTGAATTTCTAAGCTTGTCCAACCATGCAATAGTCTTCTCTCCAGCATCCTT
rJMFF009O15+ TGAACCATTTGAATTTCTAAGCTTGTCCAACCATGCAATAGTCTTCTCTCCAGCATCCTT
rJMFF039L11+ TGAACCATTTGAATTTCTAAGCTTGTCCAACCATGCAATAGTCTTCTCTCCAGCATCCTT
rJMFF002M06+ TGAACCATTTGAATTTCTAAGCTTGTCCAACCATGCAATAGTCTTCTCTCCAGCATCCTT
rJMSF039E23+ TGAACCATTTGAATTTCTAAGCTTGTCCAACCATGCAATAGTCTTCTCTCCAGCATCCTT
rJMSF023N21+ TGAACCATTTGAATTTCTAAGCTTGTCCAACCATGCAATAGTCTTCTCTCCAGCATCCTT
____________________________________________________________
consensus TGAACCATTTGAATTTCTAAGCTTGTCCAACCATGCAATAGTCTTCTCTCCAGCATCCTT

. : . : . : . : . : . :
rJMFF038I06+ CTCCNAAGGGTTCTGTTTCTCTCCTGGNCTTTGGATTTCTGCAACCCGGNTTGCACATGC
rJMFF009O15+ CTCCAAAGGTTTCTGTTTCTCTCCTGGCCTTTGGAT
rJMFF039L11+ CTCCAAAGGTTTCTGTTTCTCTCCTGGNCTTTGGA
rJMFF002M06+ CTCCAAAGGTTTCTGTTTCTCTCCTGGCCTTTGGATTTCTGCAACCCGGTTTGCACATGC
rJMSF039E23+ CTCCAAAGGTTTCTGTTTCTCTCCTGGCCTTTGGATTTCTGCAACCCGGTTTGCACATGC
rJMSF023N21+ CTCCAAAGGTTTCTGTTTCTCTCCTGGCCTTTGGATTTCTGCAACCCGGTTTGCACATGC
____________________________________________________________
consensus CTCCAAAGGTTTCTGTTTCTCTCCTGGCCTTTGGATTTCTGCAACCCGGTTTGCACATGC

. : . : . : . : . : . :
rJMFF038I06+ C
rJMFF002M06+ CCGACCAAAAACAACAATGTCAAG
rJMSF039E23+ CCGACCAAAAACAACAATGTCAAGAAGAGAATTTGCTCCGAGCCTGTTAGCACCATGAAC
rJMSF023N21+ CCGACCAAAAACAACAATGTCAAGAAGAGAATTTGCTCCGAGCCTGTTAGCACCATGAAC
____________________________________________________________
consensus CCGACCAAAAACAACAATGTCAAGAAGAGAATTTGCTCCGAGCCTGTTAGCACCATGAAC

. : . : . : . : . : . :
rJMSF039E23+ TGATGCACAGGCAGCTTCTCCAGCAGCCATTAGGCCAGGAACTACAGCATCAGGATCATT
rJMSF023N21+ TGATGCACAGGCAGCTTCTCCAGCAGCCATTAGGCCAGGAACTACAGCATCAGGATCATT
____________________________________________________________
consensus TGATGCACAGGCAGCTTCTCCAGCAGCCATTAGGCCAGGAACTACAGCATCAGGATCATT

. : . : . : . : . : . :
rJMSF039E23+ ACCTTTGACAGTCACCACCTCTCCATGG
rJMSF023N21+ ACCTTTGACAGTCACCACCTCTCCATGGTGATTTGTTGGAATCCCACCCATATNATAANG
JMFF017L20- ATTTGTTGGAATCCCACCCATATTATAATG
____________________________________________________________
consensus ACCTTTGACAGTCACCACCTCTCCATGGTGATTTGTTGGAATCCCACCCATATTATAATG

. : . : . : . : . : . :
rJMSF023N21+ CACAGTAGGTAAAACAGGAATNGGCTCCTTGGTGACATCTACACC
JMFF017L20- CACAGTAGGTAAAACAGGAATTGGCTCCTTTGTGACATCTACACCAGCAAAAATGGCAGC
____________________________________________________________
consensus CACAGTAGGTAAAACAGGAATTGGCTCCTTGGTGACATCTACACCAGCAAAAATGGCAGC

. : . : . : . : . : . :
JMFF017L20- AGTTTCAGAGATACCAGGAAGCCTTTCTTTAAGGACTTCCGGAGGTAAATGGTTCAAGTG
____________________________________________________________
consensus AGTTTCAGAGATACCAGGAAGCCTTTCTTTAAGGACTTCCGGAGGTAAATGGTTCAAGTG

. : . : . : . : . : . :
JMFF017L20- GAGATAGATATGGTCCTTTAGTGGTCCGACACCACGCCCTTCACGAATTTCCATTGTCAT
____________________________________________________________
consensus GAGATAGATATGGTCCTTTAGTGGTCCGACACCACGCCCTTCACGAATTTCCATTGTCAT

. : . : . : . : . : . :
JMFF017L20- AGACCTTGAAACAACATCCCTAGATGCAAGATCCTTGGCTGTTGGTGCATACCGTTCCAT
____________________________________________________________
consensus AGACCTTGAAACAACATCCCTAGATGCAAGATCCTTGGCTGTTGGTGCATACCGTTCCAT

. : . : . : . : . : . :
JMFF017L20- AAATCGCTCACCTTCACTATTCCTGAGAATCCCACCTTCACCACGAGACCCTTCAGTAAT
____________________________________________________________
consensus AAATCGCTCACCTTCACTATTCCTGAGAATCCCACCTTCACCACGAGACCCTTCAGTAAT

. : . : . : . : . : . :
JMFF017L20- TAGACAACCAGCTCCATATATACCAGTTGGATGGAATTGCACAAACTCAAGGTCCTGGAG
____________________________________________________________
consensus TAGACAACCAGCTCCATATATACCAGTTGGATGGAATTGCACAAACTCAAGGTCCTGGAG

. : . : . : . : . : . :
JMFF017L20- AGGAAGCCCAGCACGTGCAACCATAGCATTCCCATCTCCTGTGCAAGTATGAGCTGAGGT
____________________________________________________________
consensus AGGAAGCCCAGCACGTGCAACCATAGCATTCCCATCTCCTGTGCAAGTATGAGCTGAGGT

. : . : . : . : . : . :
JMFF017L20- TGCAGAGAAATACGTTCTGCCATATCCCCCTGTGGCCAAAATTGTAGAAGCAGCACGGAA
____________________________________________________________
consensus TGCAGAGAAATACGTTCTGCCATATCCCCCTGTGGCCAAAATTGTAGAAGCAGCACGGAA

. : . : . : . : . : . :
JMFF017L20- GCGATGTAAAGTACCATCCTCCATATTTAGAGCAATTACACCTTGGCAGCTTCCATCTTT
____________________________________________________________
consensus GCGATGTAAAGTACCATCCTCCATATTTAGAGCAATTACACCTTGGCAGCTTCCATCTTT

. : . : . : . : . : . :
JMFF017L20- AT
____________________________________________________________
consensus AT