Alignment Contig 11095

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF030J12+ TCTTCTTTATTTATTTCTCCTCAAAACTAAGGAAGAAGGTAACAACTCCAAACTTAGATC
rJMFF021O23+ AAACTAAGGAAGAAGGTAACAACTCCAAACTTAGATC
rJMSF036N05+ AAACTAAGGAAGAAGGTAACAACTCCAAACTTAGATC
rJMSF017C14+ AGGAAGAAGGTAACAACTCCAAACTTAGATC
rJMSF004F02+ AACTTAGATC
____________________________________________________________
consensus TCTTCTTTATTTATTTCTCCTCAAAACTAAGGAAGAAGGTAACAACTCCAAACTTAGATC

. : . : . : . : . : . :
rJMFF030J12+ ATAATTAGTACATCATATCCCCATCAAAACTTGTACAATAACTTCTGGAAGAGTGGCATA
rJMFF021O23+ ATAATTANTACATCATATCCCCATCAAAACTTGTACAATAACTTCTGGAAGAGTGGCATA
rJMSF036N05+ ATAATTAGTACATCATATCCCCATCAAAACTTGTACAATAACTTCTGGAAGAGTGGCATA
rJMSF017C14+ ATAATTAGTACATCATATCCCCATCAAAACTTGTACAATAACTTCTGGAAGAGTGGCATA
rJMSF004F02+ ATAATTAGTACATCATNTCCCCATCAGAACTTGTACAATAACTNCTGGAAGAGTGGCANA
____________________________________________________________
consensus ATAATTAGTACATCATATCCCCATCAAAACTTGTACAATAACTTCTGGAAGAGTGGCATA

. : . : . : . : . : . :
rJMFF030J12+ TGATCAGCATCCAAGCACACAGCCAGTGATAAGCTCCGGTCTTTGTTTGGGCTAGGCAAT
rJMFF021O23+ TGATCANCATCCAAGCACACAGCCAGTGATAAGCTCCGGTCTTTGTTTGGGCTAGGCAAT
rJMSF036N05+ TGATCAGCATCCAAGCACACAGCCAGTGATAAGCTCCGGTCTTTGTTTGGGCTAGGCAAT
rJMSF017C14+ TGATCAGCATCCAAGCACACAGCCAGTGATAAGCTCCGGTCTTTGTTTGGGCTAGGCAAT
rJMSF004F02+ TGATCAGNATCCAAGCNCACAGCCAGTGATNAGCTCCGGTCTTTGTTTGGGCTAGGCAAT
____________________________________________________________
consensus TGATCAGCATCCAAGCACACAGCCAGTGATAAGCTCCGGTCTTTGTTTGGGCTAGGCAAT

. : . : . : . : . : . :
rJMFF030J12+ ATGTACACCGTGCCCTCATACAAAATGAGGGCCGGCCCCATGTGGACAGGTGTCCCCCAC
rJMFF021O23+ ATGTACACCGTGCCCTCATACAAAATGANGGCCGGCCCCATGTGGACAGGTGTCCCCCAC
rJMSF036N05+ ATGTACACCGTGCCCTCATACAAAATGAGGGCCGGCCCCATGTGGACAGGTGTCCCCCAC
rJMSF017C14+ ATGTACACCGTGCCCTCATACAAAATGAGGGCCGGCCCCATGTGGACAGGTGTCCCCCAC
rJMSF004F02+ ATGNACACCGTGCCCTCATACAAAATGAGGGGCGGNCCCATGTGAACAGGTGTCCCCCAC
____________________________________________________________
consensus ATGTACACCGTGCCCTCATACAAAATGAGGGCCGGCCCCATGTGGACAGGTGTCCCCCAC

. : . : . : . : . : . :
rJMFF030J12+ CCGAAATCCGAGTTGTGGACCGGCAACCTAGTCCAACTGTTGATGTTAAGGTTGGGACTA
rJMFF021O23+ CCGAAATCCGAGTTGTGGACCGGCAACCTANTCCAACTGTTGATGTTAAGGTTGGGACTA
rJMSF036N05+ CCGAAATCCGAGTTGTGGACCGGCAACCTAGTCCAACTGTTGATGTTAAGGTTGGGACTA
rJMSF017C14+ CCGAAATCCGAGTTGTGGACCGGCAACCTAGTCCAACTGTTGATGTTAAGGTTGGGACTA
rJMSF004F02+ CCG
____________________________________________________________
consensus CCGAAATCCGAGTTGTGGACCGGCAACCTAGTCCAACTGTTGATGTTAAGGTTGGGACTA

. : . : . : . : . : . :
rJMFF030J12+ GCAAAGTAGTTTGAGCCCCGGACCAGTTTTGACAAGTCCGGTTGGCACTCTAGGTAGTCA
rJMFF021O23+ GCAAAGTAGTTTGAGCCCCGGACCAGTTTTGACAAGTCCGGTTGGCACTCTAGGTAGTCA
rJMSF036N05+ GCAAAGTAGTTTGAGCCCCGGACCAGTTTTGACAAGTCCGGTTGGCACTCTAGGTAGTCA
rJMSF017C14+ GCAAAGTAGTTTGAGCCCCGGACCAGTTTTGACAAGTCCGGTTGGCACTCTAGGTAGTCA
____________________________________________________________
consensus GCAAAGTAGTTTGAGCCCCGGACCAGTTTTGACAAGTCCGGTTGGCACTCTAGGTAGTCA

. : . : . : . : . : . :
rJMFF030J12+ AGGGCGGATCTTAAGTACTCGTCGTCCATTCTCACCAGAGCGCTACGGATTCTCTTGGCA
rJMFF021O23+ AGGGCGGATCTTAAGTACTCGTCGTCCATTCTCACCANAGCGCTACGGATTCTCTTGGCA
rJMSF036N05+ AGGGCGGATCTTAAGTACTCGTCGTCCATTCTCACCAGAGCGCTACGGATTCTCTTGGCA
rJMSF017C14+ AGGGCGGATCTTAAGTACTCGTCGTCCATTCTCACCAGAGCGCTACGGATTCTCTTGGCA
____________________________________________________________
consensus AGGGCGGATCTTAAGTACTCGTCGTCCATTCTCACCAGAGCGCTACGGATTCTCTTGGCA

. : . : . : . : . : . :
rJMFF030J12+ GAGCTGGCTAGCGGCTCGGTTAGGAGCTCGCCCGATTCAGCCACCGGGGTGGCAGTAAAA
rJMFF021O23+ GAGCTGGCTAGCGGCTCGGTTAGGAGCTCGCCCGATTCAGCCACCGGGGTGGCAGTAAAA
rJMSF036N05+ GAGCTGGCTAGCGGCTCGGTTAGGAGCTCGCCCGATTCAGCCACCGGGGTGGCAGTAAAA
rJMSF017C14+ GAGCTGGCTAGCGGCTCGGTTAGGAGCTCGCCCGATTCAGCCACCGGGGTGGCAGTAAAA
JMFN013K03- GCTCGCCCGATTCAGCCACCGGGGTGGCAGTAAAA
____________________________________________________________
consensus GAGCTGGCTAGCGGCTCGGTTAGGAGCTCGCCCGATTCAGCCACCGGGGTGGCAGTAAAA

. : . : . : . : . : . :
rJMFF030J12+ ATCACATTGCCTAGGAACCCCGGGGGCAGGGCAGGGCACAGCCTGGACCGACCATCCGTG
rJMFF021O23+ ATCACATTGCCTANGAACCCC
rJMSF036N05+ ATCACATTGCCTAGGAACCCCGGGGGCAGGGCAGGGCACAGCCTGGACCGACCATCCGTG
rJMSF017C14+ ATCACATTGCCTAGGAACCCCGGGGGCAGGGCAGGGCACAGCCTGGACCGACCATCCGTG
JMFN013K03- ATCACATTGCCTAGGAACNCCGNGGGCAGGGCAGGGCACAGCCTGGACCGACCATCCGTG
____________________________________________________________
consensus ATCACATTGCCTAGGAACCCCGGGGGCAGGGCAGGGCACAGCCTGGACCGACCATCCGTG

. : . : . : . : . : . :
rJMFF030J12+ GCAATATATAGTTTGGTAGTTTGATCATCAGAAAGCCCCCGGGCTTCGCACACACAACGC
rJMSF036N05+ GCAATATATAGTTTGGTAGTTTGATCATCAGAAAGCCCCCGGGCTTCGCACACACAACGC
rJMSF017C14+ GCAATATATAGTTTGGTAGTTTGATCATCAGAAAGCCCCCGGGCTTCGCACACACAACGC
JMFN013K03- GCAATATATAGTTTGGTAGTTTGATCATCAGAAAGCCCCCGGGCTTCGCACACACAACGC
____________________________________________________________
consensus GCAATATATAGTTTGGTAGTTTGATCATCAGAAAGCCCCCGGGCTTCGCACACACAACGC

. : . : . : . : . : . :
rJMFF030J12+ CATATGTGTGCCGCAAGGGATCTCGTAGGTGCTACCCTCGTGGCTCGAGTTCGTTTTGAG
rJMSF036N05+ CATATGTGTGCCGCAAGG-ATCTCGTAGGTGCTACCCTCGTGGCTCGAGTTCGTTTTGAG
rJMSF017C14+ CATATGTGTGCCGCAAGG-ATCTCGTAGGTGCTACCCTCGTGGCTCGAGTTCGTTTTGAG
JMFN013K03- CATATGTGTGCCGCAAGG-ATCTCGTAGGTGCTACCCTCGTGGCTCGAGTTCGTTTTGAG
____________________________________________________________
consensus CATATGTGTGCCGCAAGG-ATCTCGTAGGTGCTACCCTCGTGGCTCGAGTTCGTTTTGAG

. : . : . : . : . : . :
rJMFF030J12+ AANGGCGAGCTGTT
rJMSF036N05+ AAGGGCGAGCTGTTGAGGGGTGATTTTAAGCATGGCTGTGCTTGGATTAGCTCCCGGCAG
rJMSF017C14+ AAGGGCGAGCTGTTGAGGGGTGATTTTAAGCATGGCTGTGCTTGGATTAGCTCCCGGCAG
JMFN013K03- AAGGGCGAGCTGTTGAGGGGTGATTTTAAGCATGGCTGTGCTTGGATTAGCTCCCGGCAG
____________________________________________________________
consensus AAGGGCGAGCTGTTGAGGGGTGATTTTAAGCATGGCTGTGCTTGGATTAGCTCCCGGCAG

. : . : . : . : . : . :
rJMSF036N05+ CTTGGAGAGTGGCCCGGA
rJMSF017C14+ CTTGGAGAGTGGCCCGGA
JMFN013K03- CTTGGAGAGTGGCCCGGATTTTAGAGTGGGAGGGTGATCATACTCGGTGTGTTTAAATGC
____________________________________________________________
consensus CTTGGAGAGTGGCCCGGATTTTAGAGTGGGAGGGTGATCATACTCGGTGTGTTTAAATGC

. : . : . : . : . : . :
JMFN013K03- CGGGCAAGGAGGGTCTCTAGCCCGGAGAATGGTCCGATCAATGAAAGGCGGGATAGCAAC
____________________________________________________________
consensus CGGGCAAGGAGGGTCTCTAGCCCGGAGAATGGTCCGATCAATGAAAGGCGGGATAGCAAC

. : . : . : . : . : . :
JMFN013K03- CGAGAGGCCTCGAGCTAGGTCTGCCCAGGTTTTGATGAAGTGAAGGGCCGAGAGGCCATC
____________________________________________________________
consensus CGAGAGGCCTCGAGCTAGGTCTGCCCAGGTTTTGATGAAGTGAAGGGCCGAGAGGCCATC

. : . : . : . : . : . :
JMFN013K03- TGAGAGCGTGTGGAAGATCCCGGTTCCAAGAGACACTCCACCACACTTGAAACGTGTGAC
____________________________________________________________
consensus TGAGAGCGTGTGGAAGATCCCGGTTCCAAGAGACACTCCACCACACTTGAAACGTGTGAC

. : . : . : . : . : . :
JMFN013K03- CTGGAAAAGGGCAAGCGGGAAGGAAGAAATGTCCCCAGAAGTATCAACAGAGGGGAGGAG
____________________________________________________________
consensus CTGGAAAAGGGCAAGCGGGAAGGAAGAAATGTCCCCAGAAGTATCAACAGAGGGGAGGAG

. : . : . : . : . : . :
JMFN013K03- CTTCCTGAGCTCCAAACTAGGAGTAAAGTCCCCAAAATCATCAATTGTTGCG
____________________________________________________________
consensus CTTCCTGAGCTCCAAACTAGGAGTAAAGTCCCCAAAATCATCAATTGTTGCG