Alignment Contig 11070

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF025A21+ AATATGTTTAAAACTTGATTAAGTACAAGATATTAACACATTATCTAACCTG-TTAAATC
rJMSF004L17+ G-TTAAATC
rJMSF046B04+ G-TTAAATC
rJMSF009H05+ AACTTGATTAAGTACAAGATATTAACACATTATCTAACCTGGTTAAATC
rJMSF007O14+ AACTTGATTAGGTACAAGATATTAACACATTATCTAACCTGGTTAAATC
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consensus AATATGTTTAAAACTTGATTAAGTACAAGATATTAACACATTATCTAACCTG-TTAAATC

. : . : . : . : . : . :
rJMFF025A21+ CTCAAAAATTTAAAGTAGAGAGTACCATTCTTTATAATGTTGAAAGAGGAAGTATTGAAG
rJMSF004L17+ CTCAAAAATTTAAAGTAGAGAGTACCATTCTTTATAATGTTGAAAGAGGAAGTATTGAAG
rJMSF046B04+ CTCAAAAATTTAAAGTAGAGAGTACCATTCTTTATAATGTTGAAAGAGGAAGTATTGAAG
rJMSF009H05+ CTCAAAAATTTAAAGTAGAGAGTACCATTCTTTATAATGTTGAAAGAGGAAGTATCGAAG
rJMSF007O14+ CTCAAAAATTTAAAGTAGAGAGTACCATTCTTTATAATGTTGAAAGAGGAAGTATTGAAG
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consensus CTCAAAAATTTAAAGTAGAGAGTACCATTCTTTATAATGTTGAAAGAGGAAGTATTGAAG

. : . : . : . : . : . :
rJMFF025A21+ TTTAAGATTCATCCTTGTTAACTGTATCATCTCCCATAAGTTCTTCAAGGGAAAACTCAT
rJMSF004L17+ TTTAAGATTCATCCTTGTTAACTGTATCATCTCCCATAAGTTCTTCAAGGGAAAACTCAT
rJMSF046B04+ TTTAAGATTCATCCTTGTTAACTGTATCATCTCCCATAAGTTCTTCAAGGGAAAACTCAT
rJMSF009H05+ TTTAAGATTCATCCTTGTTAACTGTATCATCTCCCATAAGTTCTTCAAGGGAAAACTCAT
rJMSF007O14+ TTTAAGATTCATCCTTGTTAACTGTATCATCTCCCATAAGTTCTTCAAGGGAAAACTCAT
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consensus TTTAAGATTCATCCTTGTTAACTGTATCATCTCCCATAAGTTCTTCAAGGGAAAACTCAT

. : . : . : . : . : . :
rJMFF025A21+ CCTCTTCCATGATTTCCCCATCTTTACCGTCCCAAGGTTCGGTCTTTACAATTGTAGGGG
rJMSF004L17+ CCTCTTCCATGATTTCCCCATCTTTACCGTCCCAAGGTTCGGTCTTTACAATTGTANGGG
rJMSF046B04+ CCTCTTCCATGATTTCCCCATCTTTACCGTCCCAAGGTTCGGTCTTTACAATTGTAGGGG
rJMSF009H05+ CCTCTTCCATGATTTCCCCATCTTTACCGTCCCAAGGTTCGGTCTTTACAATTGTAGGGG
rJMSF007O14+ CCTCTTCCATGATTTCCCCATCTTTACCGTCCCAAGGTTCGGTCTTTACAATTGTAGGGG
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consensus CCTCTTCCATGATTTCCCCATCTTTACCGTCCCAAGGTTCGGTCTTTACAATTGTAGGGG

. : . : . : . : . : . :
rJMFF025A21+ TGCCAGTTAAAGGCAAATTTCTTCCCCTACCCCCTAATTCTCCAATTTCTCTCACGAACT
rJMSF004L17+ TGCCAGTTAAAGGCAAATTTCTTCCCCTACCCCCTAATTCTCCAATTTCTCTCACGAACT
rJMSF046B04+ TGCCAGTTAAAGGCAAATTTCTTCCCCTACCCCCTAATTCTCCAATTTCTCTCACGAACT
rJMSF009H05+ TGCCAGTTAAAGGCAAATTTCTTCCCCTACCCCCTAATTCTCCAATTTCTCTCACGAACT
rJMSF007O14+ TGCCAGTTAAAGGCAAATTTCTTCCCCTACCCCCTAATTCTCCAATTTCTCTCACGAACT
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consensus TGCCAGTTAAAGGCAAATTTCTTCCCCTACCCCCTAATTCTCCAATTTCTCTCACGAACT

. : . : . : . : . : . :
rJMFF025A21+ CTTTAATATGGTCGTGTTGAAATGAACTCTTAAGGGGTGCATATACTTGGTTTTTAACAC
rJMSF004L17+ CTTTAATATGGTCGTGTTGAAATGAACTCTTAAGGGGTGCATATACNTGGNTTNTNACAC
rJMSF046B04+ CTTTAATATGGTCGTGTTGAAATGAACTCTTAAGGGGTGCATATACTTGGTTTTTAACAC
rJMSF009H05+ CTTTAATATGGTCGTGTTGAAATGAACTCTTAAGGGGTGCATATACTTGGTTTTTAACAC
rJMSF007O14+ CTTTAATATGGTCGTGTTGAAATGAACTCTTAAGGGGTGCATATACTTGGTTTTTAACAC
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consensus CTTTAATATGGTCGTGTTGAAATGAACTCTTAAGGGGTGCATATACTTGGTTTTTAACAC

. : . : . : . : . : . :
rJMFF025A21+ TTAGGACTACTAGCGCAGGATAGCCATAGCCACCAACACCAACATGCTTCTCGAGATCTG
rJMSF004L17+ TTAGGA
rJMSF046B04+ TTAGGACTACTAGCGCAGGATAGCCATAGCCACCAACACCAACATGCTTCTCGAGATCTG
rJMSF009H05+ TTAGGACTACTAGCGCAGGATAGCCATAGCCACCAACACCAACATGCTTCTCGAGATCTG
rJMSF007O14+ TTAGGACTACTAGCGCAGGATAGCCATAGCCACCAACACCAACATGCTTCTCGAGATCTG
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consensus TTAGGACTACTAGCGCAGGATAGCCATAGCCACCAACACCAACATGCTTCTCGAGATCTG

. : . : . : . : . : . :
rJMFF025A21+ GTTGCTTACCGGCAGCAGCCCAAACATAGCTGTAGGGCTTCGTTTTGAACTTCTCAGCAA
rJMSF046B04+ GTTGCTTACCGGCAGCAGCCCAAACATAGCTGTAGGGCTTCGTTTTGAACTTCTCAGCAA
rJMSF009H05+ GTTGCTTACCGGCAGCAGCCCAAACATAGCTGTAGGGCTTCGTTTTGAACTTCTCAGCAA
rJMSF007O14+ GTTGCTTACCGGCAGCAGCCCAAACATAGCTGTAGGGCTTCGTTTTGAACTTCTCAGCAA
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consensus GTTGCTTACCGGCAGCAGCCCAAACATAGCTGTAGGGCTTCGTTTTGAACTTCTCAGCAA

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rJMFF025A21+ CAGATAACAATGTCTCAAGGTATTTGTTCCTTCCCTCTGCCTTGGAGTCCAAAATGTCAG
rJMSF046B04+ CAGATAACAATGTCTCAAGGTATTTGTTCCTTCCCTCTGCCTTGGAGTCCAAAATGTCAG
rJMSF009H05+ CAGATAACAATGTCTCAAGGTATTTGTTCCTTCCCTCTGCCTTGGAGTCCAAAATATCAG
rJMSF007O14+ CAGATAACAATGTCTCAAGGTATTTGTTCCTTCCCTCTGCCTTGGAGTCCAAAATGTCAG
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consensus CAGATAACAATGTCTCAAGGTATTTGTTCCTTCCCTCTGCCTTGGAGTCCAAAATGTCAG

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rJMFF025A21+ GGAGAAATGCCACAAA-GCAAAGAGCAGCAGAGCTACATTTTTCTTCCATAACATCCGGT
rJMSF046B04+ GGAGAAATGCCACAAAAGCAAAGAGCAGCAGAGCTACATTTTTCTTCCATAACATCCGGT
rJMSF009H05+ GGAGAAATGCCACAAA-GCAAAGAGCAGCAGAGCTACATTTTTCTTCCATAACATCCGGT
rJMSF007O14+ GGAGAAATGCCACAAA-GCAAAGAGCAGCAGAGCTACATTTTTCTTCCATAACATCCGGT
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consensus GGAGAAATGCCACAAA-GCAAAGAGCAGCAGAGCTACATTTTTCTTCCATAACATCCGGT

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rJMFF025A21+ CCAGTCAATTCAGTTACTTCAGGAGGAGAAACATTTATCTCCAGCTGCTCTAGTGCATAT
rJMSF046B04+ CCAGTCAATTCAGTTACTTCAGGAG
rJMSF009H05+ CCAGTCAATTCAGTTACTTCAGGAGGAGAAACATTTATCTCCAGCTGCTCTAGTGCATAT
rJMSF007O14+ CCAGTCAATTCAGTTACTTCAGGAGGAGAAACATTTATCTCCAGCTGCTCTAGTGCATAT
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consensus CCAGTCAATTCAGTTACTTCAGGAGGAGAAACATTTATCTCCAGCTGCTCTAGTGCATAT

. : . : . : . : . : . :
rJMFF025A21+ GATTCAATTGCAGAGGCAGTCCTTGCACCATTATAA
rJMSF009H05+ GATTCAATTGCAGAGGCAGTCCTTGCACCATTATAAGGTACAGGATGGTCCTTGTCAGCA
rJMSF007O14+ GATTCAATTGCAGAGGCAGTCCTTGCACCATTATAAGGTACAGGATGGTCCTTGTCAGCA
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consensus GATTCAATTGCAGAGGCAGTCCTTGCACCATTATAAGGTACAGGATGGTCCTTGTCAGCA

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rJMSF009H05+ CCAAATACCAAAATTGTAGGGAACCCTTGGACACTGAACCTGCTCATCAGAGACTTCTCT
rJMSF007O14+ CCAAATACCAAAATTGTAGGGAACCCTTGGACACTGAACCTGCTCATCAGAGACTTCTCT
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consensus CCAAATACCAAAATTGTAGGGAACCCTTGGACACTGAACCTGCTCATCAGAGACTTCTCT

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rJMSF009H05+ GCATCACAG
rJMSF007O14+ GCATCACAGTCT
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consensus GCATCACAGTCT