Alignment Contig 11064

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF023L03+ AAAATCACCACTCAAGTAATTAGGAACACACAACAAATATGTACTATGTATTCTGGAGAT
rJMFF040A08+ GTAATTAGGAACACACAACAAATATGTACTATGTATTCTGGAGAT
rJMFF014N20+ TATGTACTATGTATTCTGGAGAT
rJMFF005P10+ TATGTACTATGTATTCTGGAGAT
rJMFF033D21+ ACTATGTATTCTGGAGAT
____________________________________________________________
consensus AAAATCACCACTCAAGTAATTAGGAACACACAACAAATATGTACTATGTATTCTGGAGAT

. : . : . : . : . : . :
rJMFF023L03+ ATAACCCCAAAAAATTGTAATGTCATGAAGATCCACCAAACAACTGGCGGGTGGGTAACA
rJMFF040A08+ ATAACCCCAAAAAATTGTAATGTCATGAAGATCCACCAAACAACTGGCGGGTGGGTAACA
rJMFF014N20+ ATAACCCCAAAAAATTGTAATGTCATGAAGATCCACCAAACAACTGGCGGGTGGGTAACA
rJMFF005P10+ ATAACCCCAAAAAATTGTAATGTCATGAAGATCCACCAAACAACTGGCGGGTGGGTAACA
rJMFF033D21+ ATAACCCCAAAAAATTGTAATGTCATGAAGATCCACCAAACAACTGGCGGGTGGGTAACA
____________________________________________________________
consensus ATAACCCCAAAAAATTGTAATGTCATGAAGATCCACCAAACAACTGGCGGGTGGGTAACA

. : . : . : . : . : . :
rJMFF023L03+ ATGTTCTCAAAATGTGGTATGGCACAAATATAATTTCCATACAAATAACACAACAAAGTA
rJMFF040A08+ ATGTTCTCAAAATGTGGTATGGCACAAATATAATTTCCATACAAATAACACAACAAAGTA
rJMFF014N20+ ATGTTCTCAAAATGTGGTATGGCACAAATATAATTTCCATACAAATAACACAACAAAGTA
rJMFF005P10+ ATGTTCTCAAAATGTGGTATGGCACAAATATAATTTCCATACAAATAACACAACAAAGTA
rJMFF033D21+ ATGTTCTCAAAATGTGGTATGGCACAAATATAATTTCCATACAAATAACACAACAAAGTA
____________________________________________________________
consensus ATGTTCTCAAAATGTGGTATGGCACAAATATAATTTCCATACAAATAACACAACAAAGTA

. : . : . : . : . : . :
rJMFF023L03+ CACAGGACTCCCGCAAGAAGCTCTTTCCATCCGAACAAACATTTAACATTTTAACCTCCA
rJMFF040A08+ CACAGGACTCCCGCAAGAAGCTCTTTTCATCCGAACAAACATTTAACATTTTAACCTCCA
rJMFF014N20+ CACAGGACTCCCGCAAGAAGCTCTTTTCATCCGAACAAACATTTAACATTTTAACCTCCA
rJMFF005P10+ CACAGGACTCCCGCAAGAAGCTCTTTTCAGCCGAACAAACATTTAACATTTTAACCTCCA
rJMFF033D21+ CACAGGACTCCCGCAAGAAGCTCTTTTCATCCGAACAAACATTTAACATTTTAACCTCCA
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consensus CACAGGACTCCCGCAAGAAGCTCTTTTCATCCGAACAAACATTTAACATTTTAACCTCCA

. : . : . : . : . : . :
rJMFF023L03+ GAGTGGGTGGCTGGAGATGTTATGAATTGGCCATCCTTGTACACATGAATATACTGCTGA
rJMFF040A08+ GAGTGGGTGGCTGGAGATGTTATGAATTGGCCATCCTTGTACACATGAATATACTGCTGA
rJMFF014N20+ GAGTGGGTGGCTGGAGATGTTATGAATTGGCCATCCTTGTACACATGAATATACTGCTGA
rJMFF005P10+ GAGTGGGTGGCTGGAAATGTTATGAATTGGCCATCCTTGTACACATGAATATACTGCTGA
rJMFF033D21+ GAGTGGGTGGCTGGAGATGTTATGAATTGGCCATCCTTGTACACATGAATATACTGCTGA
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consensus GAGTGGGTGGCTGGAGATGTTATGAATTGGCCATCCTTGTACACATGAATATACTGCTGA

. : . : . : . : . : . :
rJMFF023L03+ GGCAAAGCATGCTCCTCCCAATCAGCATCAGGCCCTGCACCAGGCACCAAAATGTTAACT
rJMFF040A08+ GGCAAAGCATGCTCCTCCCAATCAGCATCAGGCCCTGCACCAGGCACCAAAATGTTAACT
rJMFF014N20+ GGCAAAGCATGCTCCTCCCAATCAGCATCAGGCCCTGCACCAGGCACCAAAATGTTAACT
rJMFF005P10+ GGCAAAGCATGCTCCTCCCAATCAGCATCAGGCCCTGCACCAGGCACCAAAATGTTAACT
rJMFF033D21+ GGCAAAGCATGCTCCTCCCAATCAGCATCAGGCCCTGCACCAGGCACCAAAATGTTAACT
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consensus GGCAAAGCATGCTCCTCCCAATCAGCATCAGGCCCTGCACCAGGCACCAAAATGTTAACT

. : . : . : . : . : . :
rJMFF023L03+ TCACTGGATTTGGCTGCTGTAATAGAAGCCTCCAAAGAATCCTTGCTCAGGTATAACAGG
rJMFF040A08+ TCACTGGATTTGGCTGTTGTAATAGAAGCCTCCAAAGAATCCTTGCTCAGGTATAACAGG
rJMFF014N20+ TCACTGGATTTGGCTGTTGTAATAGAAGCCTCCAAAGAATCCTTGCTCAGGTATAACAGG
rJMFF005P10+ TCACTGGATTTGGCTGTTGTAATAGAAGCCTCCAAAGAATCCTTGCTCAGGTATAACAGG
rJMFF033D21+ TCACTGGATTTGGCTGTTGTAATAGAAGCCTCCAAAGAATCCTTGCTCAGGTATAACAGG
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consensus TCACTGGATTTGGCTGTTGTAATAGAAGCCTCCAAAGAATCCTTGCTCAGGTATAACAGG

. : . : . : . : . : . :
rJMFF023L03+ CACCCAGATGTATTATCCACTGAAATTGTTGGGGCCACGCCCTGGCATTGCACCTCTACA
rJMFF040A08+ CACCCAGATGTATTATCCACTGAAATTGTTGGGGCCACGCCCTGGCATTGCACCTCTACA
rJMFF014N20+ CACCCAGATGTATTATCCACTGAAATTGTTGGGGCCACGCCCTGGCATTGCACCTCTACA
rJMFF005P10+ CACCCAGATGTATTATCCACTGAAATTGTTGGGGCCACGCCCTGGCATTGCACCTCTACA
rJMFF033D21+ CACCCAGATGTATTATCCACTGAAATTGTTGGGGCCACGCCCTGGCATTGCACCTCTACA
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consensus CACCCAGATGTATTATCCACTGAAATTGTTGGGGCCACGCCCTGGCATTGCACCTCTACA

. : . : . : . : . : . :
rJMFF023L03+ CCGCTGCAATTGACAACCTCAAAAGCTGCCACAACATCCGAGAATACAACTCCCATCTTA
rJMFF040A08+ CCGCTGCAATTGACAACCTCAAAAGCTGCCACAACATCCGAGAATACAACTCCCATCTTA
rJMFF014N20+ CCGCTGCAATTGACAACCTCAAAAGCTGCCACAACATCCGAGAATACAACTCCCATCTTA
rJMFF005P10+ CCGCTGCAATTGACAACCTCAAAAGCTGCCACAACATCCGAGAATACAACTCCCATCTTA
rJMFF033D21+ CCGCTGCAATTGACAACCTCAAAAGCTGCCACAACATCCGAGAATACAACTCCCATCTTA
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consensus CCGCTGCAATTGACAACCTCAAAAGCTGCCACAACATCCGAGAATACAACTCCCATCTTA

. : . : . : . : . : . :
rJMFF023L03+ GTACATTTATCAATGGTTATGTTGTTAACTTTTCCCTGGATCTGCAGAACAGAATCTTTA
rJMFF040A08+ GTACATTTATCAATGGTTATGTTGTTAACTTTTCCCTGGATCTGCAGAACAGAATCTT-A
rJMFF014N20+ GTACATTTATCAATGGTTATGTTGTTAACTTTTCCCTGGATCTGCAGAACAGAATCTTTA
rJMFF005P10+ GTACATTTATCAATGGTTATGTTGTTAACTTTTCCCTGGATCTGCAGAACAGAATCTTTA
rJMFF033D21+ GTACATTTATCAATGGTTATGTTGTTAACTTTTCCCTGGATCTGCAGAACAGAATCTTTA
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consensus GTACATTTATCAATGGTTATGTTGTTAACTTTTCCCTGGATCTGCAGAACAGAATCTTTA

. : . : . : . : . : . :
rJMFF023L03+ CAACCAAAGATGTATACAGACTGCTTGG-CATCGCAGTCATCAATAACTAAATTTTTCTT
rJMFF040A08+ CAACCAAAGATGTATACAGACTGCTTGG-CATCGCAGTCATCAATAACTAAATTTTTCTT
rJMFF014N20+ CAACCAAAGATGTATACAGACTGCTTGGGCATCGCAGTCATCAATAACTAAATTTTTCTT
rJMFF005P10+ CAACCAAAGATGTATACAGACTGCTTGG-CATCGCAGTCATCAATAACTAAATTTTTCTT
rJMFF033D21+ CAACCAAAGATGTATACAGACTGCTTGG-CATCGCAGTCATCAATAACTAAATTTTTCTT
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consensus CAACCAAAGATGTATACAGACTGCTTGG-CATCGCAGTCATCAATAACTAAATTTTTCTT

. : . : . : . : . : . :
rJMFF023L03+ CCCAATTTGATTCTCCACCACCCATTTGCGACCCATTTGGAGCTCTAATTTTGGANGTCC
rJMFF040A08+ CCCAATTTGATTCTCCACCACCCATTTGCGACCCATTTGGAGCTCTAATTT
rJMFF014N20+ CCCAATTTGATTCTCCACCACCCATTTGCGACCCATTTGGAGCTCTAATTTTGGANGTCC
rJMFF005P10+ CCCAATTTGATTCTCCACCACCCATTTGCGACCCATTTGGAGCTCTAATTTTGGAGGTCC
rJMFF033D21+ CCCAATTTGATTCTCCACCACCCATTTGCGACCCATTTGGAGCTCTAATTTTGGAGGTCC
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consensus CCCAATTTGATTCTCCACCACCCATTTGCGACCCATTTGGAGCTCTAATTTTGGAGGTCC

. : . : . : . : . : . :
rJMFF023L03+ TGCTTT
rJMFF014N20+ TGCTTT
rJMFF005P10+ TGCTTT
rJMFF033D21+ TGCTTTAGAGAATGAGGGTGAACTAACACGGCCTTCCTTTTCACTAGCTCCAACAATGCC
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consensus TGCTTTAGAGAATGAGGGTGAACTAACACGGCCTTCCTTTTCACTAGCTCCAACAATGCC

. : . : . : . : . : . :
rJMFF033D21+ ACTTCTGTCTGCTCGATTCTTTGTTTTCATATCATTTG
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consensus ACTTCTGTCTGCTCGATTCTTTGTTTTCATATCATTTG