Alignment Contig 1077

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF014A24+ AATGCTCCAGTTATAACATAGATTTGAAGTGGATTGGACTAAGAAGTGGAGTCCTGTATC
rJMSF027H24+ ACATAGATTTGAAGTGGATTGGACTAAGAAGTGGAGTCCTGTATC
rJMFF007A15+ AATGCTCCAGTTATAACATAGATTTGAAGTGGATTGGACTAAGAAGTGGAGTCCTGTATC
rJMSF014O14+ CATAGATTTGAAGTGGATTGGACTAAGAAGTGGAGTCCTGTATC
rJMFF031O02+ AATGCTCCAGTTATAACATAGATTTGAAGTGGATTGGACTAAGAAGTGGAGTCCTGTATC
____________________________________________________________
consensus AATGCTCCAGTTATAACATAGATTTGAAGTGGATTGGACTAAGAAGTGGAGTCCTGTATC

. : . : . : . : . : . :
rJMFF014A24+ ATAGCATCAAGAAGCAAGTGTTGTGCTAGGGCAGCTATCTACAGCACAAGCTAGGATGTC
rJMSF027H24+ ATAGCATCAAGAAGCAAGTGTTGTGCTAGGGCAGCTATCTACAGCACAAGCTAGGATGTC
rJMFF007A15+ ATAGCATCAAGAAGCAAGTGTTGTGCTAGGGCAGCTATCTACAGCACAAGCTAGGATGTC
rJMSF014O14+ ATAGCATCAAGAAGCAAGTGTTGTGCTAGGGCAGCTATCTACAGCACAAGCTAGGATGTC
rJMFF031O02+ ATAGCATCAAGAAGCAAGTGTTGTGCTAGGGCAGCTATCTACAGCACAAGCTAGGATGTC
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consensus ATAGCATCAAGAAGCAAGTGTTGTGCTAGGGCAGCTATCTACAGCACAAGCTAGGATGTC

. : . : . : . : . : . :
rJMFF014A24+ TCTGTAGTCTCTCGATATCCTGAAGGAATCGTAAACCTTACCATCTCTGCTCTTTTTGTA
rJMSF027H24+ TCTGTAGTCTCTCGATATCCTGAAGGAATCGTAAACCTTACCATCTCTGCTCTTTTTGTA
rJMFF007A15+ TCTGTAGTCTCTCGATATCCTGAAGGAATCGTAAACCTTACCATCTCTGCTCTTTTTGTA
rJMSF014O14+ TCTGTAGTCTCTCGATATCCTGAAGGAATCGTAAACCTTACCATCTCTGCTCTTTTTGTA
rJMFF031O02+ TCTGTAGTCTCTCGATATCCTGAAGGAATCGTAAACCTTACCATCTCTGCTCTTTTTGTA
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consensus TCTGTAGTCTCTCGATATCCTGAAGGAATCGTAAACCTTACCATCTCTGCTCTTTTTGTA

. : . : . : . : . : . :
rJMFF014A24+ CTCGAACAGCAGATTTGAATGGTCGAAAGCTGTCAGTTTCACGAACCCATGATCAAAGTC
rJMSF027H24+ CTCGAACAGCAGATTTGAATGGTCGAAAGCTGTCAGTTTCACGAACCCATGATCAAAGTC
rJMFF007A15+ CTCGAACAGCAGATTTGAATGGTCGAAAGCTGTCAGTTTCACGAACCCATGATCAAAGTC
rJMSF014O14+ CTCGAACAGCAGATTTGAATGGTCGAAAGCTGTCAGTTTCACGAACCCATGATCAAAGTC
rJMFF031O02+ CTCGAACAGCAGATTTGAATGGTCGAAAGCTGTCAGTTTCACGAACCCATGATCAAAGTC
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consensus CTCGAACAGCAGATTTGAATGGTCGAAAGCTGTCAGTTTCACGAACCCATGATCAAAGTC

. : . : . : . : . : . :
rJMFF014A24+ CCTGAAAAGACTCCACGACGGTTGGATGGGGGCAAAGTCCGAGTCCAAGATGCTTGCTCC
rJMSF027H24+ CCTGAAAAGACTCCACGACGGTTGGATGGGGGCAAAGTCCGAGTCCAAGATGCTTGCTCC
rJMFF007A15+ CCTGAAAAGACTCCACGACGGTTGGATGGGGGCAAAGTCCGAGTCCAAGATGCTTGCTCC
rJMSF014O14+ CCTGAAAAGACTCCACGACGGTTGGATGGGGGCAAAGTCCGAGTCCAAGATGCTTGCTCC
rJMFF031O02+ CCTGAAAAGACTCCACGACGGTTGGATGGGGGCAAAGTCCGAGTCCAAGATGCTTGCTCC
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consensus CCTGAAAAGACTCCACGACGGTTGGATGGGGGCAAAGTCCGAGTCCAAGATGCTTGCTCC

. : . : . : . : . : . :
rJMFF014A24+ TGCTCCACCAGCGACGACATGTATTGTCCCGTTCAAAGGTCCCTTGTAGAAGTTCTTCTC
rJMSF027H24+ TGCTCCACCAGCGACGACATGTATTGTCCCGTTCAAAGGTCCCTTGTAGAAGTTCTTCTC
rJMFF007A15+ TGCTCCACCAGCGACGACATGTATTGTCCCGTTCAAAGGTCCCTTGTAGAAGTTCTTCTC
rJMSF014O14+ TGCTCCACCAGCGACGACATGTATTGTCCCGTTCAAAGGTCCCTTGTAGAAGTTCTTCTC
rJMFF031O02+ TGCTCCACCAGCGACGACATGTATTGTCCCGTTCAAAGGTCCCTTGTAGAAGTTCTTCTC
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consensus TGCTCCACCAGCGACGACATGTATTGTCCCGTTCAAAGGTCCCTTGTAGAAGTTCTTCTC

. : . : . : . : . : . :
rJMFF014A24+ CTTGTTTGTGCAAATATTCTGGTAAACAGGGCATGTTCGCTCATAATTGTGCACATGCCC
rJMSF027H24+ CTTGTTTGTGCAAATATTCTGGTAAACAGGGCATGTTCGCTCATAATTGTGCACATGCCC
rJMFF007A15+ CTTGTTTGTGCAAATATTCTGGTAAACAGGGCATGTTCGCTCATAATTGTGCACATGCCC
rJMSF014O14+ CTTGTTTGTGCAAATATTCTGGTAAACAGGGCATGTTCGCTCATAATTGTGCACATGCCC
rJMFF031O02+ CTTGTTTGTGCAAATATTCTGGTAAACAGGGCATGTTCGCTCATAATTGTGCACATGCCC
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consensus CTTGTTTGTGCAAATATTCTGGTAAACAGGGCATGTTCGCTCATAATTGTGCACATGCCC

. : . : . : . : . : . :
rJMFF014A24+ GAAGATAGCGATATCAACTTTATACTTTTGCCAGAGCTTTTGAAGGCTCTCCCTCCCCAT
rJMSF027H24+ GAAGATAGCGATATCAACTTTATACTTTTGCCAGAGCTTTTGAAGGCTCTCCCTCCCCAT
rJMFF007A15+ GAAGATAGCGATATCAACTTTATACTTTTGCCAGAGCTTTTGAAGGCTCTCCCTCCCCAT
rJMSF014O14+ GAAGATAGCGATATCAACTTTATACTTTTGCCAGAGCTTTTGAAGGCTCTCCCTCCCCAT
rJMFF031O02+ GAAGATAGCGATATCAACTTTATACTTTTGCCAGAGCTTTTGAAGGCTCTCCCTCCCCAT
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consensus GAAGATAGCGATATCAACTTTATACTTTTGCCAGAGCTTTTGAAGGCTCTCCCTCCCCAT

. : . : . : . : . : . :
rJMFF014A24+ GGGTTCCTCAGTTGATCCTTGCTCAACATAGTATGAGCACGAAGAATAACCGAGGACTCG
rJMSF027H24+ GGGTTCCTCAGTTGATCCTTGCTCAACATAGTATGAGCACGAAGAATAACCGAGGACTCG
rJMFF007A15+ GGGTTCCTCAGTTGATCCTTGCTCAACATAGTATGAGCACGAAGAATAACCGAGGACTCG
rJMSF014O14+ GGGTTCCTCAGTTGATCCTTGCTCAACATAGTATGAGCACGAAGAATAACCGAGGACTCG
rJMFF031O02+ GGGTTCCTCAGTTGATCCTTGCTCAACATAGTATGAGCACGAAGAATAACCGAGGACTCG
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consensus GGGTTCCTCAGTTGATCCTTGCTCAACATAGTATGAGCACGAAGAATAACCGAGGACTCG

. : . : . : . : . : . :
rJMFF014A24+ GTGTGCAAGGAAGATAAGCCACGGTTGTTTTTGTCTGTCTGCTGACGCCAGACAGTGTTC
rJMSF027H24+ GTGTGCAAGGAAGATAAGCCACGGTTGTTTTTGTCTGTCTGCTGACGCCAGACAGTGTTC
rJMFF007A15+ GTGTGCAAGGAAGATAAGCCACGGTTGTTTTTGTCTGTCTGCTGACGCCAGACAGTGTTC
rJMSF014O14+ GTGTGCAAGGAAGATAAGCCACGGTTGTTTTTGTCTGTCTGCTGACGCCAGACAGTGTTC
rJMFF031O02+ GTGTGCAAGGAAGATAAGCCACGGTTGTTTTTGTCTGTCTGCTGACGCCAGACAGTGTTC
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consensus GTGTGCAAGGAAGATAAGCCACGGTTGTTTTTGTCTGTCTGCTGACGCCAGACAGTGTTC

. : . : . : . : . : . :
rJMFF014A24+ GATGAACTTATATTGCTCCGTTCCCTCTCTCCAGTCGTGTTCTGTGTCAGCTATGCAGAA
rJMSF027H24+ GATGAACTTATATTGCTCCGTTCCCTCTCTCCAGTCGTGTTCTGTGTCAGCTATGCAGAA
rJMFF007A15+ GATGAACTTATATTGCTCCGTTCCCTCTCTCCAGTCGTGTTCTGTGTCANCTATGCAGAA
rJMSF014O14+ GATGAACTTATATTGCTCCGTTCCCTCTCTCCAGTCGTGTTCTGTGTCAGCTATGCAGAA
rJMFF031O02+ GATGAACTTATATTGCTCCGTTCCCTCTCTCCAGTCGTGTTCTGTGTCAGCTATGCAGAA
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consensus GATGAACTTATATTGCTCCGTTCCCTCTCTCCAGTCGTGTTCTGTGTCAGCTATGCAGAA

. : . : . : . : . : . :
rJMFF014A24+ CCGGAACATGCCATAGTCAGTTGAGTACCAAAA-CTTTTCTCGGTTCTCGGTGGGAGCAT
rJMSF027H24+ CCGGAACATGCCATAGTCAGTTGAGTACNAAAA-CTTTTCTCGGTTCTCGGTGGGAGCAT
rJMFF007A15+ CCGGAACATGCCATAGTCAGTTGAGTACCAAAA-CTTTTCTCGGTTCTCGGTGGGAGCAT
rJMSF014O14+ CCGGAACATGCCATAGTCAGTTGAGTACCAAAA-CTTTTCTCGGTTCTCGGTGGGAGCAT
rJMFF031O02+ CCGGAACATGCCATAGTCAGTTGAGTACCAAAAACTTTTCTCGGTTCTCGGTGGGAGCAT
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consensus CCGGAACATGCCATAGTCAGTTGAGTACCAAAA-CTTTTCTCGGTTCTCGGTGGGAGCAT

. : . : . : . : . : . :
rJMFF014A24+ AAAACATAGTTTGAACCAAGACTCCACATTCTCCTCCCGAATCCATGTTCCCGTAGAATG
rJMSF027H24+ AAA
rJMFF007A15+ A
rJMSF014O14+ AAAACATAGTTTGAACCAAGACTCCACATTCTCCTCCCGAATCCATG
rJMFF031O02+ AAAACATAGTTTGAACCAAGACTCCACATTCTCCTCCCGAATCCATGTTCCCGTANAATG
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consensus AAAACATAGTTTGAACCAAGACTCCACATTCTCCTCCCGAATCCATGTTCCCGTAGAATG

. : . : . : . : . : . :
rJMFF014A24+ ATCCTGTTCCANGNCAGTCGCGCTCATGGNT
rJMFF031O02+ ATCCTGTTCCA
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consensus ATCCTGTTCCANGNCAGTCGCGCTCATGGNT