Alignment Contig 1047

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF008H07+ AAGTATTTGAATTATTGTATGAGTTTTTCTTTGCTTTATTATTTACAGCGTATTCTAGTT
rJMSF034C23+ CTTTGCTTTATTATTTACAGCGTATTCTAGTT
rJMSF028I05+ CTTTGCTTTATTATTTACAGCGTATTCTAGTT
____________________________________________________________
consensus AAGTATTTGAATTATTGTATGAGTTTTTCTTTGCTTTATTATTTACAGCGTATTCTAGTT

. : . : . : . : . : . :
rJMFF008H07+ GGAATCCACAGTGTGGATCTCCGCACCGAATCTTGTCTCTTCTTATTTTTCTCAAAATTT
rJMSF034C23+ GGAATCCACAGTGTGGATCTCCGCACCGAATCTTGTCTCTTCTTATTTTTCTCAAAATTT
rJMSF028I05+ GGAATCCACAGTGTGGATCTCCGCACCGAATCTTGTCTCTTCTTATTTTTCTCAAAATTT
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consensus GGAATCCACAGTGTGGATCTCCGCACCGAATCTTGTCTCTTCTTATTTTTCTCAAAATTT

. : . : . : . : . : . :
rJMFF008H07+ ATATTCCCCCAATTCACATGTGACGCTACAAAACAATTAACACCCTGTCCCTTCGAACCG
rJMSF034C23+ ATATTCCCCCAATTCACATGTGACGCTACAAAACAATTAACACCCTGTCCCTTCGAACCG
rJMSF028I05+ ATATTCCCCCAATTCACATGTGACGCTACAAAACAATTAACACCCTGTCCCTTCGAACCG
rJMSF031M05+ GTGACGCTACAAAACAATTAACACCCTGTCCCTTCGAACCG
____________________________________________________________
consensus ATATTCCCCCAATTCACATGTGACGCTACAAAACAATTAACACCCTGTCCCTTCGAACCG

. : . : . : . : . : . :
rJMFF008H07+ CTTCTCCAACCAATCCCGTCCAGCCAGCTCAGCCACCATAATATCTCTGCCGTTTGGGCC
rJMSF034C23+ CTTCTCCAACCAATCCCGTCCAGCCAGCTCAGCCACCATAATATCTCTGCCGTTTGGGCC
rJMSF028I05+ CTTCTCCAACCAATCCCGTCCAGCCAGCTCAGCCACCATAATATCTCTGCCGTTTGGGCC
rJMSF031M05+ CTTCTCCAACCAATCCCGTCCAGCCAGCTCAGCCACCATAATATCTCTGCCGTTTGGGCC
____________________________________________________________
consensus CTTCTCCAACCAATCCCGTCCAGCCAGCTCAGCCACCATAATATCTCTGCCGTTTGGGCC

. : . : . : . : . : . :
rJMFF008H07+ CCACTGACACGTTTCCCTATGTCTGTAATAACCCCTCGGCTACAATCCCAGCTGTCTCCC
rJMSF034C23+ CCACTGACACGTTTCCCTATGTCTGTAATAACCCCTCGGCTACAATCCCAGCTGTCTCCC
rJMSF028I05+ CCACTGACACGTTTCCCTATGTCTGTAATAACCCCTCGGCTACAATCCCAGCTGTCTCCC
rJMSF031M05+ CCACTGACACGTTTCCCTATGTCTGTAATAACCCCTCGGCTACAATCCCAGCTGTCTCCC
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consensus CCACTGACACGTTTCCCTATGTCTGTAATAACCCCTCGGCTACAATCCCAGCTGTCTCCC

. : . : . : . : . : . :
rJMFF008H07+ ATTTAATTTTATATCACAAACCCTACACGCCACGTCATCTAAAGTACATCTTAGCTGACC
rJMSF034C23+ ATTTAATTTTATATCACAAACCCTACACGCCACGTCATCTAAAGTACATCTTAGCTGACC
rJMSF028I05+ ATTTAATTTTATATCACAAACCCTACACGCCACGTCATCTAAAGTACATCTTAGCTGACC
rJMSF031M05+ ATTTAATTTTATATCACAAACCCTACACGCCACGTCATCTAAAGTACATCTTAGCTGACC
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consensus ATTTAATTTTATATCACAAACCCTACACGCCACGTCATCTAAAGTACATCTTAGCTGACC

. : . : . : . : . : . :
rJMFF008H07+ GCCCAATGGGAATCGTCCACGTAACCAGCTGCCTATTGGGTAGAAACCCTTGACCTGCGG
rJMSF034C23+ GCCCAATGGGAATCGTCCACGTAACCAGCTGCCTATTGGGTAGAAACCCTTGACCTGCGG
rJMSF028I05+ GCCCAATGGGAATCGTCCACGTAACCAGCTGCCTATTGGGTAGAAACCCTTGACCTGCGG
rJMSF031M05+ GCCCAATGGGAATCGTCCACGTAACCAGCTGCCTATTGGGTAGAAACCCTTGACCTGCGG
____________________________________________________________
consensus GCCCAATGGGAATCGTCCACGTAACCAGCTGCCTATTGGGTAGAAACCCTTGACCTGCGG

. : . : . : . : . : . :
rJMFF008H07+ TGAGAGCGGCTGAGTTTGTTGGTGAGGGCGAGGAGGACCTGCCACGTGGCGTCTCCTTCC
rJMSF034C23+ TGAGAGCGGCTGAGTTTGTTGGTGAGGGCGAGGAGGACCTGCCACGTGGCGTCTCCTTCC
rJMSF028I05+ TGAGAGCGGCTGAGTTTGTTGGTGAGGGCGAGGAGGACCTGCCACGTGGCGTCTCCTTCC
rJMSF031M05+ TGAGAGCGGCTGAGTTTGTTGGTGAGGGCGAGGAGGACCTGCCACGTGGCGTCTCCTTCC
____________________________________________________________
consensus TGAGAGCGGCTGAGTTTGTTGGTGAGGGCGAGGAGGACCTGCCACGTGGCGTCTCCTTCC

. : . : . : . : . : . :
rJMFF008H07+ ACCATCGGATCGTTGAACAGGAGGGCCCGGCGAATGCGCGGGTCCCACAGCCGCCGTCGT
rJMSF034C23+ ACCATCGGATCGTTGAACAGGAGGGCCCGGCGAATGCGCGGGTCCCACAGCCGCCGTCGT
rJMSF028I05+ ACCATCGGATCGTTGAACAGGAGGGCCCGGCGAATGCGCGGGTCCCACAGCCGCCGTCGT
rJMSF031M05+ ACCATCGGATCGTTGAACAGGAGGGCCCGGCGAATGCGCGGGTCCCACAGCCGCCGTCGT
____________________________________________________________
consensus ACCATCGGATCGTTGAACAGGAGGGCCCGGCGAATGCGCGGGTCCCACAGCCGCCGTCGT

. : . : . : . : . : . :
rJMFF008H07+ ATGGCGGTGAGATTAGTCGCCGCCGCTTTTTCAAGAATGGGGCCGAGCTTGGGCACGTCT
rJMSF034C23+ ATGGCGGTGAGA
rJMSF028I05+ ATGGCGGTGAGATTAGTCGCCGCCGCTTTTTCAAGAATGGGGCCGAGCTTGGGCACGTCT
rJMSF031M05+ ATGGCGGTGAGATTAGTCGCCGCCGCTTTTTCAAGAATGGGGCCGAGCTTGGGCACGTCT
____________________________________________________________
consensus ATGGCGGTGAGATTAGTCGCCGCCGCTTTTTCAAGAATGGGGCCGAGCTTGGGCACGTCT

. : . : . : . : . : . :
rJMFF008H07+ TTTTCCAACACCGTGACGGAGATTTCCTCCCACGGCACGGCAGAGGGGAACGGCAGTTGG
rJMSF028I05+ TTTTCCAACACCGTGACGGAGATTTCCTCCCACGGCACGGCAGAGGGGAACGGCAGTTGG
rJMSF031M05+ TTTTCCAACACCGTGACGGAGATTTCCTCCCACGGCACGGCAGAGGGGAACGGCAGTTGG
____________________________________________________________
consensus TTTTCCAACACCGTGACGGAGATTTCCTCCCACGGCACGGCAGAGGGGAACGGCAGTTGG

. : . : . : . : . : . :
rJMFF008H07+ ATGGCGTCAGCAATGATCACCGGCACGCAGCCCA
rJMSF028I05+ ATGGCGTCAGCAATGATCACCGGCACGCAGCCCAGAACCACAGACTCCACCAGCCGGGGA
rJMSF031M05+ ATGGCGTCAGCAATGATCACCGGCACGCAGCCCANAACCACAGACTCCACCAGCCGGGGA
____________________________________________________________
consensus ATGGCGTCAGCAATGATCACCGGCACGCAGCCCAGAACCACAGACTCCACCAGCCGGGGA

. : . : . : . : . : . :
rJMSF028I05+ CTCCACGGCGCCCATCCTAAAGGGCACAAACAAAACGTTGACGGTAGAA
rJMSF031M05+ CTCCACGGCGCCCATCCTAAAGGGCACAAACAAAACGTTGACCGTAGAATCTCCGACTGG
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consensus CTCCACGGCGCCCATCCTAAAGGGCACAAACAAAACGTTGACCGTAGAATCTCCGACTGG

. : . : . : . : . : . :
rJMSF031M05+ TAAC
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consensus TAAC