Alignment Contig 1045

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF008C09+ ATACAGGAAACATTACAGAAGGAAGACACTG-ACAACAATGAAGCCAAGAATTTATAACA
rJMSF003P16+ ACATTACAGAAGGAAGACACTGNACAACAATGAAGCCAAGAATTTATAACA
rJMFF004M21+ ACATTACAGAAGGAAGACACTG-ACAACAATGAAGCCAAGAATTTATAACA
rJMFF018C16+ GGAAACATTACAGAAGGAAGACACTG-ACAACAATGAAGCCAAGAATTTATAACA
____________________________________________________________
consensus ATACAGGAAACATTACAGAAGGAAGACACTG-ACAACAATGAAGCCAAGAATTTATAACA

. : . : . : . : . : . :
rJMFF008C09+ ACACTTGACTAAACAGAGCTTGACTGACCACTAGCCACTTCTCTGCTTGCCTTGGCTGGC
rJMSF003P16+ ACACTTGACTAAACAGAGCTTGACTGACCACTAGCCACTTCTCTGCTTGCCTTGGCTGGC
rJMFF004M21+ ACACTTGACTAAACAGAGCTTGACTGACCACTAGCCACTTCTCTGCTTGCCTTGGCTGGC
rJMFF018C16+ ACACTTGACTAAACAGAGCTTGACTGACCACTAGCCACTTCTCTGCTTGCCTTGGCTGGC
____________________________________________________________
consensus ACACTTGACTAAACAGAGCTTGACTGACCACTAGCCACTTCTCTGCTTGCCTTGGCTGGC

. : . : . : . : . : . :
rJMFF008C09+ TTTTCTCACCAGCAGGAAGCAAACCTAATTCATTCAAATATCCAAACTTTACCCAGCAGC
rJMSF003P16+ TTTTCTCACCAGCAGGAAGCAAACCTAATTCATTCAAATATCCAAACTTTACCCAGCAGC
rJMFF004M21+ TTTTCTCACCAGCAGGAAGCAAACCTAATTCATTCAAATATCCAAACTTTACCCAGCAGC
rJMFF018C16+ TTTTCTCACCAGCAGGAAGCAAACCTAATTCATTCAAATATCCAAACTTTACCCAGCAGC
____________________________________________________________
consensus TTTTCTCACCAGCAGGAAGCAAACCTAATTCATTCAAATATCCAAACTTTACCCAGCAGC

. : . : . : . : . : . :
rJMFF008C09+ AGCCATACAAACAGAAGACAAGAGCTAACTGACAAACTAAATACTCCGATGCGGAACTGA
rJMSF003P16+ AGCCATACAAACAGAAGACAAGAGCTAACTGACAAACTAAATACTCCGATGCGGAACTGA
rJMFF004M21+ AGCCATACAAACAGAAGACAAGAGCTAACTGACAAACTAAATACTCCGATGCGGAACTGA
rJMFF018C16+ AGCCATACAAACAGAAGACAAGAGCTAACTGACAAACTAAATACTCCGATGCGGAACTGA
____________________________________________________________
consensus AGCCATACAAACAGAAGACAAGAGCTAACTGACAAACTAAATACTCCGATGCGGAACTGA

. : . : . : . : . : . :
rJMFF008C09+ CACGAACGTAATTTCATAAGAGAGACTACTTTCAAAGGAACTAACTACACCAAGTTAGCA
rJMSF003P16+ CACGAACGAAATTTCATAAGAGAGACTACTTTCAAAGGAACTAACTACACCAAGTTAGCA
rJMFF004M21+ CACGAACGTAATTTCATAAGAGAGACTACTTTCAAAGGAACTAACTACACCAAGTTAGCA
rJMFF018C16+ CACGAACGTAATTTCATAAGAGAGACTACTTTCAAAGGAACTAACTACACCAAGTTAGCA
____________________________________________________________
consensus CACGAACGTAATTTCATAAGAGAGACTACTTTCAAAGGAACTAACTACACCAAGTTAGCA

. : . : . : . : . : . :
rJMFF008C09+ GATGCATGACTAAATATAATCTGTCTGCAAGATAGTTTCAAAGGGACAAAGCTTGTTTGC
rJMSF003P16+ GATGCATGACTAAATATAATCTGTCTGCAAGATAGTTTCAAAGGGACAAAGCTTGTTTGC
rJMFF004M21+ GATGCATGACTAAATATAATCTGTCTGCAAGATAGTTTCAAAGGGACAAAGCTTGTTTGC
rJMFF018C16+ GATGCATGACTAAATATAATCTGTCTGCAAGATAGTTTCAAAGGGACAAAGCTTGTTTGC
____________________________________________________________
consensus GATGCATGACTAAATATAATCTGTCTGCAAGATAGTTTCAAAGGGACAAAGCTTGTTTGC

. : . : . : . : . : . :
rJMFF008C09+ AACAGCAAACCCTAGCATCGCACTCTCGGCTGCCTCCACCACATTCAAAATTGACAACAA
rJMSF003P16+ AACAGCAAACCCTAGCATCGCACTCTCGGCTGCCTCCACCACATTCAAAATTGACAACAA
rJMFF004M21+ AACAGCAAACCCTAGCATCGCACTCTCGGCTGCCTCCACCACATTCAAAATTGACAACAA
rJMFF018C16+ AACAGCAAACCCTAGCATCGCACTCTCGGCTGCCTCCACCACATTCAAAATTGACAACAA
____________________________________________________________
consensus AACAGCAAACCCTAGCATCGCACTCTCGGCTGCCTCCACCACATTCAAAATTGACAACAA

. : . : . : . : . : . :
rJMFF008C09+ GTGTGTGGCGACTTAAATTGGTGGTCAAAAGTATGCTCAACTTGCAAACCTCCTTTTGAC
rJMSF003P16+ GTGTGTGGCGACTTAAATTGGTGGTCAAAAGTATGCTCAACTTGCAAACCTCCTTTTGAC
rJMFF004M21+ GTGTGTGGCGACTTAAATTGGTGGTCAAAAGTATGCTCAACTTGCAAACCTCCTTTTGAC
rJMFF018C16+ GTGTGTGGCGACTTAAATTGGTGGTCAAAAGTATGCTCAACTTGCAAACCTCCTTTTGAC
____________________________________________________________
consensus GTGTGTGGCGACTTAAATTGGTGGTCAAAAGTATGCTCAACTTGCAAACCTCCTTTTGAC

. : . : . : . : . : . :
rJMFF008C09+ CTCTTCAAATCATCCAACAACACTTCTATTCACCTTGTAGGCAGTAAAGTTGCCTGATAT
rJMSF003P16+ CTCTTCAAATCATCCAACAACACTTCTATTCACCTTGTAGGCAGTAAAGTTGCCTGATAT
rJMFF004M21+ CTCTTCAAATCATCCAACAACACTTCTATTCACCTTGTAGGCAGTAAAGTTGCCTGATAT
rJMFF018C16+ CTCTTCAAATCATCCAACAACACTTCTATTCACCTTGTAGGCAGTAAAGTTGCCTGATAT
____________________________________________________________
consensus CTCTTCAAATCATCCAACAACACTTCTATTCACCTTGTAGGCAGTAAAGTTGCCTGATAT

. : . : . : . : . : . :
rJMFF008C09+ TTCCAGAAGCATATAACCAGTCTTTAAACAGCACATGGAGAGCACTAGCCAATTCCCGTT
rJMSF003P16+ TTCCAGAAGCATATAACCAGTCTTTAAACAGCACATGGAGAGCACTAGCCAATTCCCGTT
rJMFF004M21+ TTCCAGAAGCATATAACCAGTCTTTAAACAGCACATGGAGAGCACTAGCCAATTCCCGTT
rJMFF018C16+ TTCCAGAAGCATATAACCAGTCTTTAAACAGCACATGGAGAGCACTAGCCAATTCCCGTT
____________________________________________________________
consensus TTCCAGAAGCATATAACCAGTCTTTAAACAGCACATGGAGAGCACTAGCCAATTCCCGTT

. : . : . : . : . : . :
rJMFF008C09+ TCCGGCTGTCTTCAAGCTCGGTTTCCCTCAATATTTGCTTAATCTCCACAAGATTCTTGT
rJMSF003P16+ TCCGGCTGTCTTCAAGCTCGGTTTCCCTCAATATTTGCTTAATCTCCACAAGATTCTTGT
rJMFF004M21+ TCCGGCTGTCTTCAAGCTCGGTTTCCCTCAATATTTGCTTAATCTCCACAAGATTCTTGT
rJMFF018C16+ TCCGGCTGTCTTCAAGCTCGGTTTCCCTCAATATTTGCTTAATCTCCACAAGATTCTTGT
____________________________________________________________
consensus TCCGGCTGTCTTCAAGCTCGGTTTCCCTCAATATTTGCTTAATCTCCACAAGATTCTTGT

. : . : . : . : . : . :
rJMFF008C09+ GATTTTTATGCTGAGAAGCCATATAAGCATCTGGCAAGGGAAAAGGGTTATCTTTCGTGG
rJMSF003P16+ GATTTTTATGCTGAGAAGCCATATAAGCATCTGGCAAGGGAAAAGGGTTATCTTTCGTG
rJMFF004M21+ GATTTTTATGCTGAGAAGCCATATAAGCATCTGGCAAGGGAAAAGGGTTATCTTTCGTG
rJMFF018C16+ GATTTTTATGCTGAGAAGCCATATAAGCATCTGGCAAGGGAAAAGGGTTATCTTTCGTGG
____________________________________________________________
consensus GATTTTTATGCTGAGAAGCCATATAAGCATCTGGCAAGGGAAAAGGGTTATCTTTCGTGG

. : . : . : . : . : . :
rJMFF008C09+ AANCAGATTGTTGAGCTTCNAACC
rJMFF018C16+ AACCAGATTGTTGAGCTTCAAACC
____________________________________________________________
consensus AACCAGATTGTTGAGCTTCAAACC