Alignment Contig 10352

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN006C11- GGAGGAAAAATGGCAGCTGTCTTTGCTGCAGAACAAGGAGACACTAGTTTATATAGTAAA
JMFN025M11- GGAGGAAAAATGGCAGCTGTCTTTGCTGCAGAACAAGGAGACACTAGTTTATATAGTAAA
rJMFF029F13+ GCTGTCTTTGCTGCAGAACAAGGAGACACTAGTTTATATAGTAAA
rJMFF016F14+ GCTGTCTTTGCTGCAGAACAAGGAGACACTAGTTTATATAGTAAA
rJMFF020E14+ GCTGTCTTTGCTGCAGAACAAGGAGACACTAGTTTATATAGTAAA
rJMSF015L02+ CTAGTTTATATAGTAAA
rJMSF037B12+ CTAGTTTATATAGTAAA
rJMSF009G07+ TAAA
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consensus GGAGGAAAAATGGCAGCTGTCTTTGCTGCAGAACAAGGAGACACTAGTTTATATAGTAAA

. : . : . : . : . : . :
JMFN006C11- TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
JMFN025M11- TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
rJMFF029F13+ TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
rJMFF016F14+ TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
rJMFF020E14+ TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
rJMSF015L02+ TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
rJMSF037B12+ TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
rJMSF009G07+ TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA
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consensus TGCTGCTACATATTTGACGACGTTTTGAAACAAGGAAAAGAAAACAAATATGACAATTTA

. : . : . : . : . : . :
JMFN006C11- CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
JMFN025M11- CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
rJMFF029F13+ CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
rJMFF016F14+ CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
rJMFF020E14+ CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
rJMSF015L02+ CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
rJMSF037B12+ CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
rJMSF009G07+ CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC
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consensus CATCACGCCTCATTTGAAGCCCAACATAGTAAAAAGAACCAGGCCCCAACATTTGAGGCC

. : . : . : . : . : . :
JMFN006C11- AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
JMFN025M11- AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
rJMFF029F13+ AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
rJMFF016F14+ AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
rJMFF020E14+ AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
rJMSF015L02+ AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
rJMSF037B12+ AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
rJMSF009G07+ AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT
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consensus AATCCAGTTGTGTATACATGAAAGAATTGAGATTAGATCACTGCTGAAAGTGGGCGTCGT

. : . : . : . : . : . :
JMFN006C11- TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
JMFN025M11- TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
rJMFF029F13+ TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
rJMFF016F14+ TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
rJMFF020E14+ TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
rJMSF015L02+ TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
rJMSF037B12+ TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
rJMSF009G07+ TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG
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consensus TGCAGCAGTGGCACCATCAAAGTCATTGTTCCCACTCCCACCCTATCCAAGCAAGAACCG

. : . : . : . : . : . :
JMFN006C11- GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
JMFN025M11- GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
rJMFF029F13+ GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
rJMFF016F14+ GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
rJMFF020E14+ GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
rJMSF015L02+ GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
rJMSF037B12+ GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
rJMSF009G07+ GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC
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consensus GAAAACATCACTAAGAGATATGATACCTTCAACGCGCTTGCTCCCAGCCTCCACAATCAC

. : . : . : . : . : . :
JMFN006C11- AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
JMFN025M11- AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
rJMFF029F13+ AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
rJMFF016F14+ AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
rJMFF020E14+ AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
rJMSF015L02+ AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
rJMSF037B12+ AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
rJMSF009G07+ AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG
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consensus AAGCCGTCTAACACCTGGCTTGGATAACTTGTCCATCACTTTATGGAGCGGGTCAGACCG

. : . : . : . : . : . :
JMFN006C11- TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC
JMFN025M11- TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC
rJMFF029F13+ TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC
rJMFF016F14+ TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC
rJMFF020E14+ TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC
rJMSF015L02+ TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC
rJMSF037B12+ TAAACACATGTGACATCTTTCATTGCCAACCATGAATGGGGAAGCATACGGTTCCTCTCC
rJMSF009G07+ TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC
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consensus TAAACACATGTGACATCTTTCATTGCCAACCATGTATGGGGAAGCATACGGTTCCTCTCC

. : . : . : . : . : . :
JMFN006C11- AAGCTGCAATGCCTTATGAATGGTCATTTCGTCA
JMFN025M11- AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGT
rJMFF029F13+ AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGTGTATAAATTTTGTC
rJMFF016F14+ AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGTGTATAAATTTTGTC
rJMFF020E14+ AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGTGTATAAATTTTGTC
rJMSF015L02+ AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGTGTATAAATTTTGTC
rJMSF037B12+ AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGTGTATAAATTTTGTC
rJMSF009G07+ AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGTGTATAAATTTTGTC
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consensus AAGCTGCAATGCCTTATGAATGGTCATTTCGTCAAGATTGATGTGTGTATAAATTTTGTC

. : . : . : . : . : . :
rJMFF029F13+ CTTGGCCAAGGCTGTGATATCACTTCGAGAATATATATCCAATAATGAGTCATTCTCATC
rJMFF016F14+ CTTGGCCAAGGCTGTGATATCACTTCGAGAATATATATCCAATAATGAGTCATTCTCATC
rJMFF020E14+ CTTGGCCAAGGCTGTGATATCACTTCGAGAATATATATCCAATAATGAGTCATTCTCATC
rJMSF015L02+ CTTGGCCAAGGCTGTGATATCACTTCGAGAATATATATCCAATAATGAGTCATTCTCATC
rJMSF037B12+ CTTGGCCAAGGCTGTGATATCACTTCGAGAATATATATCCAATAATGAGTCATTCTCATC
rJMSF009G07+ CTTGGCCAAGGCTGTGATATCACTTCGAGAATATATATCCAATAATGAGTCATTCTCATC
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consensus CTTGGCCAAGGCTGTGATATCACTTCGAGAATATATATCCAATAATGAGTCATTCTCATC

. : . : . : . : . : . :
rJMFF029F13+ AACAATGGGAATTGCACCAACTTGAGCTTGAATCAATAAATTCAGTGCTGCACTAAGCGA
rJMFF016F14+ AACAATGGGAATTGCACCAACTTGAGCTTGAATCAATAAATTCAGTGCTGCACTAAGCGA
rJMFF020E14+ AACAATGGGAATTGCACCAACTTGAGCTTGAATCAATAAATTCAGTGCTGCACTAAGCGA
rJMSF015L02+ AACAATGGGAATTGCACCAACTTGAGCTTGAATCAATAAATTCAGTGCTGCACTAAGCGA
rJMSF037B12+ AACAATGGGAATTGCACCAACTTGAGCTTGAATCAATAAATTCAGTGCTGCACTAAGCGA
rJMSF009G07+ AACAATGGGAATTGCACCAACTTGAGCTTGAATCAATAAATTCAGTGCTGCACTAAGCGA
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consensus AACAATGGGAATTGCACCAACTTGAGCTTGAATCAATAAATTCAGTGCTGCACTAAGCGA

. : . : . : . : . : . :
rJMFF029F13+ GGCAGTANGTCTCAACATCGCCAACGGCCGTCGATTTGGCTCTCCNATTTTGGGAACCCC
rJMFF016F14+ GGCAGTAGGTCTCAACATCGCCAACGGCCGTCGATTTGGCTCTCCAATTTTGGGAACCC-
rJMFF020E14+ GGCAGTAGGTCTCAACATCGCCAACGGCCGTCGATTTGGCTCTCCAATTTTGGGAACCC-
rJMSF015L02+ GGCAGTAGGTCTCAACATCGCCAACGGCCGTCGATTTGGCTCTCCAATTTTGGGAACCC-
rJMSF037B12+ GGCAGTAGGTCTCAACATCGCCAACGGCCGTCGATTTGGCTCTCCAATTTTGGGAACCC-
rJMSF009G07+ GGCAGTAGGTCTCAACATCGCCAACGGCCGTCGATTTGGCTCTCCAATTTTGGGAACCC-
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consensus GGCAGTAGGTCTCAACATCGCCAACGGCCGTCGATTTGGCTCTCCAATTTTGGGAACCC-

. : . : . : . : . : . :
rJMFF029F13+ AGGTCCCTAATGGTATGGCATTAATTGGC
rJMFF016F14+ AGGTCCCTAATGGTATGGCATTAATTGGCAATTGA
rJMFF020E14+ AGGTCCCTAATGGTATGGCATTAATTGGCAATTGAAG
rJMSF015L02+ AGGTCCCTAATGGTATGGCATTAATTGGCAATTGAAGAATGGGAAGAGATGCTGGTGAAT
rJMSF037B12+ AGGTCCCTAATGGTATGGCATTAATTGGCAATTGAAG
rJMSF009G07+ AGGTCCCTAATGGTATGGCATTAATTGGCAATTGAAGAATGGGAAGAGATGCTGGTGAAT
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consensus AGGTCCCTAATGGTATGGCATTAATTGGCAATTGAAGAATGGGAAGAGATGCTGGTGAAT

. : . : . : . : . : . :
rJMSF015L02+ GCCTGAA
rJMSF009G07+ GCCTGAATACCTACNAAGATATTTTAGTACTTCAGCAAGTGAAG
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consensus GCCTGAATACCTACNAAGATATTTTAGTACTTCAGCAAGTGAAG