Alignment Contig 10008

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF030O11+ ATATCATTGTTTTGGGTGCCTGGATATTGTAAGGTAGCTAAAACCGATCGAAATGATGGC
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consensus ATATCATTGTTTTGGGTGCCTGGATATTGTAAGGTAGCTAAAACCGATCGAAATGATGGC

. : . : . : . : . : . :
rJMSF030O11+ TTTGTTCATCGTCGACCTTCATCATGCTACCTTGCAATATCCTGGTGGCCAAAATAAGGA
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consensus TTTGTTCATCGTCGACCTTCATCATGCTACCTTGCAATATCCTGGTGGCCAAAATAAGGA

. : . : . : . : . : . :
rJMSF030O11+ TAGGCCTACCCATGATGGAGGGGAGGATGATGAGCATTTGTCATTTAAAAGAAAAAAACA
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consensus TAGGCCTACCCATGATGGAGGGGAGGATGATGAGCATTTGTCATTTAAAAGAAAAAAACA

. : . : . : . : . : . :
rJMSF030O11+ GAAATTAGAAGTAAATGTTTTTTCCATCAACCATTGTTTAATTTGGCCATTTATTTAAGA
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consensus GAAATTAGAAGTAAATGTTTTTTCCATCAACCATTGTTTAATTTGGCCATTTATTTAAGA

. : . : . : . : . : . :
rJMSF030O11+ AGAGGAAATATGAGAGTTCGGTTTGGTTTAAAGTTGAAATTGTTGTTGAATTGGTAGTTT
rJMSF015F04+ TGTTGTTGAATTGGTAGTTT
rJMSF012C06+ TGTTGTTGAATTGGTAGTTT
rJMSF011I05+ TGTTGTTGAATTGGTAGTTT
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consensus AGAGGAAATATGAGAGTTCGGTTTGGTTTAAAGTTGAAATTGTTGTTGAATTGGTAGTTT

. : . : . : . : . : . :
rJMSF030O11+ TAGTTTGTTTATGGGTTCATGTTTCCGAGGATTAAGATCGAGTTGGTTCAATTTTGATTC
rJMSF015F04+ TAGTTTGTTTATGGGTTCATGTTTCCGAGGATTAAGATCGAGTTGGTTCAATTTTGATTC
rJMSF012C06+ TAGTTTGTTTATGGGTTCATGTTTCCGAGGATTAAGATCGAGTTGGTTCAATTTTGATTC
rJMSF011I05+ TAGTTTGTTTATGGGTTCATGTTTCCGAGGATTAAGATCGAGTTGGTTCAATTTTGATTC
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consensus TAGTTTGTTTATGGGTTCATGTTTCCGAGGATTAAGATCGAGTTGGTTCAATTTTGATTC

. : . : . : . : . : . :
rJMSF030O11+ ATATCCATATCCCTGTAATACTCCCCAATCCACTTCTGGAGAATGTCTACTTCTTTCTCC
rJMSF015F04+ ATATCCATATCCCTGTAATACTCCCCAATCCACTTCTGGAGAATGTCTACTTCTTTCTCC
rJMSF012C06+ ATATCCATATCCCTGTAATACTCCCCAATCCACTTCTGGAGAATGTCTACTTCTTTCTCC
rJMSF011I05+ ATATCCATATCCCTGTAATACTCCCCAATCCACTTCTGGAGAATGTCTACTTCTTTCTCC
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consensus ATATCCATATCCCTGTAATACTCCCCAATCCACTTCTGGAGAATGTCTACTTCTTTCTCC

. : . : . : . : . : . :
rJMSF030O11+ CTTTGTTGGATGAGCCAGTCTGGGTCATTCTTTGTAGCAGATCTAAAATCAGCATGGTGT
rJMSF015F04+ CTTTGTTGGATGAGCCAGTCTGGGTCATTCTTTGTAGCAGATCTAAAATCAGCATGGTGT
rJMSF012C06+ CTTTGTTGGATGAGCCAGTCTGGGTCATTCTTTGTAGCAGATCTAAAATCAGCATGGTGT
rJMSF011I05+ CTTTGTTGGATGAGCCAGTCTGGGTCATTCTTTGTAGCAGATCTAAAATCAGCATGGTGT
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consensus CTTTGTTGGATGAGCCAGTCTGGGTCATTCTTTGTAGCAGATCTAAAATCAGCATGGTGT

. : . : . : . : . : . :
rJMSF030O11+ GCTCCTTTCTCAGTCACCAGTGCCACTATGCTATCTGATATATTTTTCAGCACACCTCCT
rJMSF015F04+ GCTCCTTTCTCAGTCACCAGTGCCACTATGCTATCTGATATATTTTTCAGCACACCTCCT
rJMSF012C06+ GCTCCTTTCTCAGTCACCAGTGCCACTATGCTATCTGATATATTTTTCAGCACACCTCCT
rJMSF011I05+ GCTCCTTTCTCAGTCACCAGTGCCACTATGCTATCTGATATATTTTTCAGCACACCTCCT
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consensus GCTCCTTTCTCAGTCACCAGTGCCACTATGCTATCTGATATATTTTTCAGCACACCTCCT

. : . : . : . : . : . :
rJMSF030O11+ CTACTCCATGGATCTTGCATTCCATTAGAGAAAATGATGTTGCTCCCAAATCTCTTCAAA
rJMSF015F04+ CTACTCCATGGATCTTGCATTCCATTAGAGAAAATGATGTTGCTCCCAAATCTCTTCAAA
rJMSF012C06+ CTACTCCATGGATCTTGCATTCCATTAGAGAAAATGATGTTGCTCCCAAATCTCTTCAAA
rJMSF011I05+ CTACTCCATGGATCTTGCATTCCATTAGAGAAAATGATGTTGCTCCCAAATCTCTTCAAA
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consensus CTACTCCATGGATCTTGCATTCCATTAGAGAAAATGATGTTGCTCCCAAATCTCTTCAAA

. : . : . : . : . : . :
rJMSF030O11+ ACCTGCTCAATCCTATTGCCACCAAAGTGAGTGGTGATCCAGTGTGGTCTGGGCTTCACT
rJMSF015F04+ ACCTGCTCAATCCTATTGCCACCAAAGTGAGTGGTGATCCAGTGTGGTCTGGGCTCCACT
rJMSF012C06+ ACCTGCTCAATCCTATTGCCACCAAAGTGAGTGGTGATCCAGTGTGGTCTGGGCTTCACT
rJMSF011I05+ ACCTGCTCAATCCTATTGCCACCAAAGTGAGTGGTGATCCAGTGTGGTCTGGGCTTCACT
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consensus ACCTGCTCAATCCTATTGCCACCAAAGTGAGTGGTGATCCAGTGTGGTCTGGGCTTCACT

. : . : . : . : . : . :
rJMSF030O11+ CCATACATCCTTTGGCAGCTCCTTTCGGTTTCTTCATAGCTATATGAAG
rJMSF015F04+ CCATACATCCTTTGGCAGCTCCTTTCGGTTTCTTCATAGCTATATGAAGATGGAGGAAAC
rJMSF012C06+ CCATACATCCTTTGGCAGCTCCTTTCGGTTTCTTCATAGCTATATGAAGATGGAGGAAAC
rJMSF011I05+ CCATACATCCTTTGGCAGCTCCTTTCGGTTTCTTCATAGCTATATGAAGATGGAGGAAAC
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consensus CCATACATCCTTTGGCAGCTCCTTTCGGTTTCTTCATAGCTATATGAAGATGGAGGAAAC

. : . : . : . : . : . :
rJMSF015F04+ ATGCTCTCCTTCGACACAACCATTGGCATAACCATTTCTGTACACGCCTGCCAGTCCCAA
rJMSF012C06+ ATGCTCTCCTTCGACACAACCATTGGCATAACCATTTCTGTACACGCCTGCCAGTCCCAA
rJMSF011I05+ ATGCTCTCCTTCGACACAACCATTGGCATAACCATTTCTGTACACGCCTGCCAGTCCCAA
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consensus ATGCTCTCCTTCGACACAACCATTGGCATAACCATTTCTGTACACGCCTGCCAGTCCCAA

. : . : . : . : . : . :
rJMSF015F04+ CCATGGAGTCCATGATCATCAGATTCATCTTCTATGTGGAAACACTTTTCTGTTCCAGAG
rJMSF012C06+ CCATGGAGTCCATGATCATCAGATTCATCTTCTATGTGGAAACACTTTTCTGTTCCAGAG
rJMSF011I05+ CCATGGAGTCCATGATCATCAGATTCATCTTCTATGTGGAAACACTTTTCTGTTCCAGAG
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consensus CCATGGAGTCCATGATCATCAGATTCATCTTCTATGTGGAAACACTTTTCTGTTCCAGAG

. : . : . : . : . : . :
rJMSF015F04+ TAATTGTAATATAAACTTGCAGCAGCAAACGCCCTGCTAATCTTTGAAGCCCCTGCTGGA
rJMSF012C06+ TAATTGTAATATAAACTTGCAGCAGCAAACGCCCTGCTAATCTTTGAAGCCCCTGCTGGA
rJMSF011I05+ TAATTGTAATATAAACTTGCAGCAGCAAACGCCCTGCTAATCTTTGAAGCCCCTGCTGGA
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consensus TAATTGTAATATAAACTTGCAGCAGCAAACGCCCTGCTAATCTTTGAAGCCCCTGCTGGA

. : . : . : . : . : . :
rJMSF015F04+ AATCCATCAATAATCTTGCACATCTTTTCTACTGGGTACGCAGGCAATGGCTTCATAAAA
rJMSF012C06+ AATCCATCAATAATCTTGCACATCTTTTCTACTGGGTACGCAGGCAATGGCTTCATAAAA
rJMSF011I05+ AATCCATCAATAATCTTGCACATCTTTTCTACTGGG
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consensus AATCCATCAATAATCTTGCACATCTTTTCTACTGGGTACGCAGGCAATGGCTTCATAAAA

. : . : . : . : . : . :
rJMSF015F04+ TTTGCCTCCGTAGCATAATTCACCATTGCTGTATACACAAAAGCTGACCATA
rJMSF012C06+ TTTGCCTCCGTANCATAATTCACCATTGCTGTATACACAAAAGCTGACCAT
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consensus TTTGCCTCCGTAGCATAATTCACCATTGCTGTATACACAAAAGCTGACCATA