Previous Contig 013952:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020I18Sequence640008060 (3)gb:AY128395_15806946e-12Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds770013952 (3)gb:AY128395_15806941e-47Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds
JMSF021I18Sequence325008060 (3)gb:AY128395_15806940.041Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds672013952 (3)gb:AY128395_15806942e-38Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds
JMSF051I13Sequence646008060 (3)gb:AY128395_15806942e-15Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds747013952 (3)gb:AY128395_15806942e-44Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020I18+ TCCAGAAGCATCTGAAAATTGGCTATCCTTCAGGGACAGCCTGCAAAGCCGTGGGTATG
rJMSF051I13+ AGGGACAGCCTGCAAAGCCGTGGGTATG
                      ____________________________________________________________
consensus TCCAGAAGCATCTGAAAATTGGCTATCCTTCAGGGACAGCCTGCAAAGCCGTGGGTATG
 
. : . : . : . : . : . :
rJMSF021I18+ TTTTGCATGAGTGCAGTGAAGAAAGNCGGTACACATGAAGTGATATGCGCTGCAT
rJMSF020I18+ AGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCAT
rJMSF051I13+ AGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCAT
                      ____________________________________________________________
consensus AGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCAT
 
. : . : . : . : . : . :
rJMSF021I18+ ATGAGCTTGTTCGCAGGAGAAGAACTNCTNCTGAGGAAGAAGATGCNGTAGGTCCAGAAA
rJMSF020I18+ ATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAAA
rJMSF051I13+ ATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAAA
                      ____________________________________________________________
consensus ATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAAA
 
. : . : . : . : . : . :
rJMSF021I18+ ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
rJMSF020I18+ ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
rJMSF051I13+ ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
                      ____________________________________________________________
consensus ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
 
. : . : . : . : . : . :
rJMSF021I18+ AGNTATCTCACGATGATGCTTCCAATACATGGCATNTTGTGGGATCAGGCCTGCAGCGTT
rJMSF020I18+ AGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGTT
rJMSF051I13+ AGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGTT
                      ____________________________________________________________
consensus AGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGTT
 
. : . : . : . : . : . :
rJMSF021I18+ TTATCCAAATGACAAACTGGAGATATATAGATTNTGAGAGAAGATTTCAACATGTTCNGG
rJMSF020I18+ TTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTGG
rJMSF051I13+ TTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTGG
                      ____________________________________________________________
consensus TTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTGG
 
. : . : . : . : . : . :
rJMSF021I18+ AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGNGTAAAGGAAGGCGACACTGTCA
rJMSF020I18+ AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTCA
rJMSF051I13+ AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTCA
                      ____________________________________________________________
consensus AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTCA
 
. : . : . : . : . : . :
rJMSF021I18+ TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
rJMSF020I18+ TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
rJMSF051I13+ TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
                      ____________________________________________________________
consensus TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
 
. : . : . : . : . : . :
rJMSF021I18+ GGAGGAAGTGGGCGACTGAACGGANTCAGTGACTTTCATGCTCGCCATTTCCTANCCCAT
rJMSF020I18+ GGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCAT
rJMSF051I13+ GGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCAT
                      ____________________________________________________________
consensus GGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCAT
 
. : . : . : . : . : . :
rJMSF021I18+ NTTAGTNTAANTTGTTCGTTTAAAGGCATAACTTGTGANGGNTTGGTCATGCCTACCACT
rJMSF020I18+ TTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCACT
rJMSF051I13+ TTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCACT
                      ____________________________________________________________
consensus TTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCACT
 
. : . : . : . : . : . :
rJMSF021I18+ AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
rJMSF020I18+ AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
rJMSF051I13+ AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
                      ____________________________________________________________
consensus AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
 
. : . : . : . : . : . :
rJMSF021I18+ GTGNCGGATGTTCTTTGAANCAGTAGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
rJMSF020I18+ GTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
rJMSF051I13+ GTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
                      ____________________________________________________________
consensus GTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
 
. : . : . : . : . : . :
rJMSF021I18+ GAGTTCACTATANCCAT
rJMSF020I18+ GAGTTCACTATAACCATATCTCTGTTTGATACCAGTATTTATAGCTATAGT
rJMSF051I13+ GAGTTCACTATAACCATATCTCTGTTTGATA-CAGTATTTATAGCTATAGTTGTAATTTT
                      ____________________________________________________________
consensus GAGTTCACTATAACCATATCTCTGTTTGATACCAGTATTTATAGCTATAGTTGTAATTTT