| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF020I18 | Sequence | 640 | 008060 (3) | gb:AY128395_1580694 | 6e-12 | Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds | 770 | 013952 (3) | gb:AY128395_1580694 | 1e-47 | Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds |
| JMSF021I18 | Sequence | 325 | 008060 (3) | gb:AY128395_1580694 | 0.041 | Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds | 672 | 013952 (3) | gb:AY128395_1580694 | 2e-38 | Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds |
| JMSF051I13 | Sequence | 646 | 008060 (3) | gb:AY128395_1580694 | 2e-15 | Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds | 747 | 013952 (3) | gb:AY128395_1580694 | 2e-44 | Arabidopsis thaliana GTP-binding protein obg-like (At5g18570) mRNA, complete cds |
This contig is upended
. : . : . : . : . : . :
rJMSF020I18+ TCCAGAAGCATCTGAAAATTGGCTATCCTTCAGGGACAGCCTGCAAAGCCGTGGGTATG
rJMSF051I13+ AGGGACAGCCTGCAAAGCCGTGGGTATG
____________________________________________________________
consensus TCCAGAAGCATCTGAAAATTGGCTATCCTTCAGGGACAGCCTGCAAAGCCGTGGGTATG
. : . : . : . : . : . :
rJMSF021I18+ TTTTGCATGAGTGCAGTGAAGAAAGNCGGTACACATGAAGTGATATGCGCTGCAT
rJMSF020I18+ AGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCAT
rJMSF051I13+ AGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCAT
____________________________________________________________
consensus AGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCAT
. : . : . : . : . : . :
rJMSF021I18+ ATGAGCTTGTTCGCAGGAGAAGAACTNCTNCTGAGGAAGAAGATGCNGTAGGTCCAGAAA
rJMSF020I18+ ATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAAA
rJMSF051I13+ ATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAAA
____________________________________________________________
consensus ATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAAA
. : . : . : . : . : . :
rJMSF021I18+ ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
rJMSF020I18+ ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
rJMSF051I13+ ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
____________________________________________________________
consensus ATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTTG
. : . : . : . : . : . :
rJMSF021I18+ AGNTATCTCACGATGATGCTTCCAATACATGGCATNTTGTGGGATCAGGCCTGCAGCGTT
rJMSF020I18+ AGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGTT
rJMSF051I13+ AGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGTT
____________________________________________________________
consensus AGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGTT
. : . : . : . : . : . :
rJMSF021I18+ TTATCCAAATGACAAACTGGAGATATATAGATTNTGAGAGAAGATTTCAACATGTTCNGG
rJMSF020I18+ TTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTGG
rJMSF051I13+ TTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTGG
____________________________________________________________
consensus TTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTGG
. : . : . : . : . : . :
rJMSF021I18+ AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGNGTAAAGGAAGGCGACACTGTCA
rJMSF020I18+ AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTCA
rJMSF051I13+ AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTCA
____________________________________________________________
consensus AGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTCA
. : . : . : . : . : . :
rJMSF021I18+ TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
rJMSF020I18+ TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
rJMSF051I13+ TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
____________________________________________________________
consensus TTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGTA
. : . : . : . : . : . :
rJMSF021I18+ GGAGGAAGTGGGCGACTGAACGGANTCAGTGACTTTCATGCTCGCCATTTCCTANCCCAT
rJMSF020I18+ GGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCAT
rJMSF051I13+ GGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCAT
____________________________________________________________
consensus GGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCAT
. : . : . : . : . : . :
rJMSF021I18+ NTTAGTNTAANTTGTTCGTTTAAAGGCATAACTTGTGANGGNTTGGTCATGCCTACCACT
rJMSF020I18+ TTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCACT
rJMSF051I13+ TTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCACT
____________________________________________________________
consensus TTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCACT
. : . : . : . : . : . :
rJMSF021I18+ AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
rJMSF020I18+ AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
rJMSF051I13+ AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
____________________________________________________________
consensus AAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTTC
. : . : . : . : . : . :
rJMSF021I18+ GTGNCGGATGTTCTTTGAANCAGTAGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
rJMSF020I18+ GTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
rJMSF051I13+ GTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
____________________________________________________________
consensus GTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAGT
. : . : . : . : . : . :
rJMSF021I18+ GAGTTCACTATANCCAT
rJMSF020I18+ GAGTTCACTATAACCATATCTCTGTTTGATACCAGTATTTATAGCTATAGT
rJMSF051I13+ GAGTTCACTATAACCATATCTCTGTTTGATA-CAGTATTTATAGCTATAGTTGTAATTTT
____________________________________________________________
consensus GAGTTCACTATAACCATATCTCTGTTTGATACCAGTATTTATAGCTATAGTTGTAATTTT