Previous Contig 013913:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024D18Sequence603006202 (4)gb:AE005172_8897638e-06Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC022464_153899720013913 (3)sp|Q06548|APKA_ARATH2e-60Protein kinase APK1A (EC 2.7.1.-).>pir|S28615|S28615 serine/threonine/tyrosine-s
JMSF037K24Sequence171006202 (4)589013913 (3)sp|Q06548|APKA_ARATH8e-39Protein kinase APK1A (EC 2.7.1.-).>pir|S28615|S28615 serine/threonine/tyrosine-s
JMSF050P08Sequence269006202 (4)476013913 (3)sp|Q06548|APKA_ARATH6e-15Protein kinase APK1A (EC 2.7.1.-).>pir|S28615|S28615 serine/threonine/tyrosine-s

Alignment

This contig is upended


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rJMSF024D18+ TG
                      ____________________________________________________________
consensus TG
 
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rJMSF024D18+ ATTTTGGATTGGCTAGAGATGGGCCAACAGGGGATAAGAGCCATGTCTCGACAAGGGTTA
                      ____________________________________________________________
consensus ATTTTGGATTGGCTAGAGATGGGCCAACAGGGGATAAGAGCCATGTCTCGACAAGGGTTA
 
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rJMSF037K24+ TATCAACAGGTCATCTTACTGCAAAGA
rJMSF024D18+ TGGGGACTTATGGATATGCTGCTCCCGAGTATCTATCAACAGGTCATCTTACTGCAAAGA
                      ____________________________________________________________
consensus TGGGGACTTATGGATATGCTGCTCCCGAGTATCTATCAACAGGTCATCTTACTGCAAAGA
 
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rJMSF037K24+ GTGANGTATACAGCTTCGGAGTCGTTCTCTTAGAAATTTTATCCGGTAAAAAAGCAATAG
rJMSF024D18+ GTGACGTATACAGCTTCGGAGTCGTTCTCTTAGAAATTTTATCCGGTAAAAAAGCAATAG
                      ____________________________________________________________
consensus GTGACGTATACAGCTTCGGAGTCGTTCTCTTAGAAATTTTATCCGGTAAAAAAGCAATAG
 
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rJMSF037K24+ NCAAGAATCGGCCTTCTGGGGAACACAGTCTTGTGGAGTGGGCAAAACNTTATCTTACCA
rJMSF024D18+ ACAAGAATCGGCCTTCTGGGGAACACAGTCTTGTGGAGTGGGCAAAACCTTATCTTACCA
                      ____________________________________________________________
consensus ACAAGAATCGGCCTTCTGGGGAACACAGTCTTGTGGAGTGGGCAAAACCTTATCTTACCA
 
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rJMSF037K24+ ACAAACGCAGAATTTTCCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
rJMSF024D18+ ACAAACGCAGAATTTTCCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
rJMSF050P08+ ACGCAGAATTTTTCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
                      ____________________________________________________________
consensus ACAAACGCAGAATTTTCCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
 
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rJMSF037K24+ AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCNTATGCATGGAACNGAAGTTGAGGC
rJMSF024D18+ AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCCTATGCATGGAACCGAAGTTGAGGC
rJMSF050P08+ AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCNTATGCATGGAACCGAAGTTGAGGC
                      ____________________________________________________________
consensus AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCCTATGCATGGAACCGAAGTTGAGGC
 
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rJMSF037K24+ CAAACATGGANGACGTGGTCAAAACCTTAGAGCAACTACAGGAGGCAAAGGACTCAACGA
rJMSF024D18+ CAAACATGGATGACGTGGTCAAAACCTTAGAGCAACTACAGGAGGCAAAGGACTCAACGA
rJMSF050P08+ CAAACATGGATGACGTGGTCAAAACTTTAGAGCAANTACAGGAGGCAANGGANTCAANGA
                      ____________________________________________________________
consensus CAAACATGGATGACGTGGTCAAAACCTTAGAGCAACTACAGGAGGCAAAGGACTCAACGA
 
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rJMSF037K24+ CGGGTGATAAAAAAGAAAGGGACCTCACTCGAGACAGCCNCCCAAAGGGCCCGTGTAAGT
rJMSF024D18+ CGGGTGATAAAAAAGAAAGGAACCTCACTCGAGACAGCCGCCCAAAGGGCCCGTCTAAGT
rJMSF050P08+ CGGGTGATAAAAAAGAAAGGAACCTCACTCGAGACAGCCGCCCAAAGGGCCCGTCTAAGT
                      ____________________________________________________________
consensus CGGGTGATAAAAAAGAAAGGAACCTCACTCGAGACAGCCGCCCAAAGGGCCCGTCTAAGT
 
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rJMSF037K24+ CCTGCCGNGGCATTGCATCAGAGACGGCCNGAATGACCACGTACCCCCGACCCTCGTCCT
rJMSF024D18+ CCTGCCGCGGCACTGCATCAGAGACGGCCCGAATGACCACGTACCCCCGACCCTCGTCCT
rJMSF050P08+ CCTGCCGCGGCACTGCATCAGAGNCGGCCCGAATGACCACGTACCCCCGACCCTCGTCCT
                      ____________________________________________________________
consensus CCTGCCGCGGCACTGCATCAGAGACGGCCCGAATGACCACGTACCCCCGACCCTCGTCCT
 
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rJMSF037K24+ NTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
rJMSF024D18+ CTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
rJMSF050P08+ CTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
                      ____________________________________________________________
consensus CTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
 
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rJMSF037K24+ AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATNTACAGCAGTTAACCTTCCAATT
rJMSF024D18+ AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATGTACAGCAGTTAACCTTCCAATT
rJMSF050P08+ AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATGTACAGCAGTTAACCTTCCAATT
                      ____________________________________________________________
consensus AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATGTACAGCAGTTAACCTTCCAATT
 
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rJMSF037K24+ TATGCATGT-CATTGTGTTG
rJMSF024D18+ TATGCATGT-CATTGTGTTGCTAGTTTGTTACACGGCTAAGGTTAGTCACCAAGGCGGG
rJMSF050P08+ TATNCATGTCCATTGTGTTGCTAGTTTGTTACACGGCTAAGGTTAGTCAGCAAGGCGGGT
                      ____________________________________________________________
consensus TATGCATGT-CATTGTGTTGCTAGTTTGTTACACGGCTAAGGTTAGTCAGCAAGGCGGGT