Previous Contig 013901:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001O14Sequence213004362 (4)586013901 (4)
JMSF008H17Sequence411004362 (4)gb:AY085215_15702882e-06Arabidopsis thaliana clone 13887 mRNA, complete sequence.>gb:AY123988_1580069 Ar785013901 (4)gb:AP005867_18592891e-04Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P059
JMSF032P09Sequence645004362 (4)gb:AY085215_15702889e-30Arabidopsis thaliana clone 13887 mRNA, complete sequence.>gb:AY123988_1580069 Ar690013901 (4)
JMSF050M04Sequence656004362 (4)gb:AY085215_15702881e-30Arabidopsis thaliana clone 13887 mRNA, complete sequence.>gb:AY123988_1580069 Ar705013901 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF008H17+ GACAAGAGAGTTTCCAGCG
                      ____________________________________________________________
consensus GACAAGAGAGTTTCCAGCG
 
. : . : . : . : . : . :
rJMSF008H17+ TGAAGCAGAGGGATATGAGAGGTTAGCTCAAGCCAAGACACTGGGCACCTCCATGGAGTT
                      ____________________________________________________________
consensus TGAAGCAGAGGGATATGAGAGGTTAGCTCAAGCCAAGACACTGGGCACCTCCATGGAGTT
 
. : . : . : . : . : . :
rJMSF032P09+ TTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGGA
rJMSF008H17+ CAAGAAGAATAATTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGGA
rJMSF050M04+ TTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGGA
                      ____________________________________________________________
consensus CAAGAAGAATAATTCTGATAGTGTCCTTGATGAAGATTTCATTCCTAGTGTGGCAGTGGA
 
. : . : . : . : . : . :
rJMSF032P09+ GGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTGC
rJMSF001O14+ C
rJMSF008H17+ GGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTGC
rJMSF050M04+ GGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTGC
                      ____________________________________________________________
consensus GGGGCCTTCATCACTCTCTAGTGTTAATGCAGGTCCTTCAAATCCAAATGCCTCTGCTGC
 
. : . : . : . : . : . :
rJMSF032P09+ TATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCTA
rJMSF001O14+ TATGAGCAATGGTGATGATTCCTTTTGACATGTTCGCAGAAGATGATGAAAACCCTCCTA
rJMSF008H17+ TATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCTA
rJMSF050M04+ TATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCTA
                      ____________________________________________________________
consensus TATGAGCAATGGTGATGATTCC-TTTGACATGTTCGCAGAAGATGATGAAAACCCTCCTA
 
. : . : . : . : . : . :
rJMSF032P09+ CCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCTG
rJMSF001O14+ CCAATCCTACCTCAAGTGAGGGTACTCTGCAAAANGACTATGTATATGATGAGTCATCTG
rJMSF008H17+ CCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCTG
rJMSF050M04+ CCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCTG
                      ____________________________________________________________
consensus CCAATCCTACCTCAAGTGAGGGTACTCTGCAAAATGACTATGTATATGATGAGTCATCTG
 
. : . : . : . : . : . :
rJMSF032P09+ GCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGCA
rJMSF001O14+ GCTATTACTATAGCAGCAGTTTGGGNTACTATTACGATCCATCATCGGGACTGTACTGCA
rJMSF008H17+ GCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGCA
rJMSF050M04+ GCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGCA
                      ____________________________________________________________
consensus GCTATTACTATAGCAGCAGTTTGGGCTACTATTACGATCCATCATCGGGACTGTACTGCA
 
. : . : . : . : . : . :
rJMSF032P09+ ACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTTC
rJMSF001O14+ ACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTTC
rJMSF008H17+ ACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTTC
rJMSF050M04+ ACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTTC
                      ____________________________________________________________
consensus ACGCGGCTTCAGGACAATGGTATTCATATAAAGAAGATTCTGGCACATACGAAGAGGTTC
 
. : . : . : . : . : . :
rJMSF032P09+ CGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAGA
rJMSF001O14+ CGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAGA
rJMSF008H17+ CGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAGA
rJMSF050M04+ CGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAGA
                      ____________________________________________________________
consensus CGCAAGCCCAACCAGAAGCAAGCTGAGCCGAAAGCGAGTACAGTAAAAGTACAGGCAAGA
 
. : . : . : . : . : . :
rJMSF032P09+ AAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTCC
rJMSF001O14+ AAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTCC
rJMSF008H17+ AAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTCC
rJMSF050M04+ AAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTCC
                      ____________________________________________________________
consensus AAGCATGTGATGGATGCAATTGCAACCACCACATCACAGGCAGAGATTTCCCGAGTTTCC
 
. : . : . : . : . : . :
rJMSF032P09+ TCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTACT
rJMSF001O14+ TCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTACT
rJMSF008H17+ TCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTACT
rJMSF050M04+ TCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTACT
                      ____________________________________________________________
consensus TCATAGCGTCTTGTTTAAAAAGATTTTTGTGGTAGATGTTTGAGTTTTGAGTCTGGTACT
 
. : . : . : . : . : . :
rJMSF032P09+ TTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACAC
rJMSF001O14+ TTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACAC
rJMSF008H17+ TTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACAC
rJMSF050M04+ TTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACAC
                      ____________________________________________________________
consensus TTATCGACTTAAGCTGCTGACTAGAAAACTGGGTAGACGGTAGAACGACGAGAGAGACAC
 
. : . : . : . : . : . :
rJMSF032P09+ TTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-G
rJMSF001O14+ TTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGACG
rJMSF008H17+ TTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-G
rJMSF050M04+ TTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-G
                      ____________________________________________________________
consensus TTGAATGACATACACATACTAGATTACATAGTTACACATCCCCTGTTGTAGGACTTGA-G
 
. : . : . : . : . : . :
rJMSF032P09+ GTGGTTCATTTGTCTCCTTGT-CAGAGTAGGTGGTGTTGTATCC
rJMSF001O14+ GTGGTTCATTTGTCTCCTTGT-CAGAGTA-GTGGTGTTGTATCC
rJMSF008H17+ GTGGTTCATTTGTCTCCTTGT-CAGAGTA-GTGGTGTTGTATCC
rJMSF050M04+ GTGGTTCATTTGTCTCCTTGTCCAGAGTA-GTGGTGTTGTATCCCCTATGTTATCTAGCC
                      ____________________________________________________________
consensus GTGGTTCATTTGTCTCCTTGT-CAGAGTA-GTGGTGTTGTATCCCCTATGTTATCTAGCC