clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF023J13 | Sequence | 268 | 002992 (3) | 204 | 013845 (3) | gb:AB017065_1513379 | 2e-07 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16.>gb:BT014856_1641 | |||
JMSF041H14 | Sequence | 351 | 013845 (3) | gb:AB017065_1513379 | 6e-24 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16.>gb:BT014856_1641 | |||||
JMSF049K12 | Sequence | 597 | 020496 | gb:AB017065_1513379 | 1e-81 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16.>gb:BT014856_1641 | 690 | 013845 (3) | gb:AP003106_1824762 | 4e-61 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P066 |
This contig is upended
. : . : . : . : . : . :
rJMSF049K12+ GACAACAGCATCTGTGTATGACAAAGGCGG
____________________________________________________________
consensus GACAACAGCATCTGTGTATGACAAAGGCGG
. : . : . : . : . : . :
rJMSF049K12+ AGGCCCCATACTGGCCCAGCGTGCGTATGCTAACCCCGACGTGAACCAATCTCCTGCAAC
____________________________________________________________
consensus AGGCCCCATACTGGCCCAGCGTGCGTATGCTAACCCCGACGTGAACCAATCTCCTGCAAC
. : . : . : . : . : . :
rJMSF049K12+ ACCTTTTGATATGGGAAGTAGTNTCGTGAATGCAACTGCGGCATTGGATCCAGGGNNTAT
____________________________________________________________
consensus ACCTTTTGATATGGGAAGTAGTNTCGTGAATGCAACTGCGGCATTGGATCCAGGGNNTAT
. : . : . : . : . : . :
rJMSF049K12+ TCTTGATTCAAGCTACAATGACTATATGTCATTTCTGTGTGGCATCAACGGATCCACCCC
____________________________________________________________
consensus TCTTGATTCAAGCTACAATGACTATATGTCATTTCTGTGTGGCATCAACGGATCCACCCC
. : . : . : . : . : . :
rJMSF041H14+ GGCATGGACCT
rJMSF049K12+ TGTGGTTCTGAACTACACGAGCGAGAGCTGTGGCACCTCCACTTTGACTGGCATGGACCT
____________________________________________________________
consensus TGTGGTTCTGAACTACACGAGCGAGAGCTGTGGCACCTCCACTTTGACTGGCATGGACCT
. : . : . : . : . : . :
rJMSF041H14+ CAACATGCCCTCGATCACAATTNCCAGGNTGANCCNATCCCGAGTGGTTCAACGAACCCT
rJMSF023J13+ GGTTCAACGAACCCT
rJMSF049K12+ CAACATGCCCTCGATCACAATTGCCAGGCTGAACCAATCCCGAGTGGTTCAACGAACCCT
____________________________________________________________
consensus CAACATGCCCTCGATCACAATTGCCAGGCTGAACCAATCCCGAGTGGTTCAACGAACCCT
. : . : . : . : . : . :
rJMSF041H14+ GACTAACGTGGGNGGCAGCGAATCATATGTNGTTGGGTGGAGTNCGCCNTACGGGGCTTC
rJMSF023J13+ GACNAATGNGGGTGGCAGNGAATCNTATGTTGTTGGNTGGAGTGCGCCTTNCGGGGTTTC
rJMSF049K12+ GACTAATGTGGGTGGCAGCGAATCATATGTTGTTGGGTGGAGTGCGCCTTACGGGGCTTC
____________________________________________________________
consensus GACTAATGTGGGTGGCAGCGAATCATATGTTGTTGGGTGGAGTGCGCCTTACGGGGCTTC
. : . : . : . : . : . :
rJMSF041H14+ GGNGAAGNTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGNTTGAACTTGNTCAT
rJMSF023J13+ GGNGAAGGTAANGCCAACGCGGTTTTGTGTNGGAAGCGGGGAGAGTTTGAACTTGNCCAT
rJMSF049K12+ GGTGAAGGTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGTTTGAACTTGACCAT
____________________________________________________________
consensus GGTGAAGGTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGTTTGAACTTGACCAT
. : . : . : . : . : . :
rJMSF041H14+ ATCGTTTAACGNGACTATGAACAACAGCANCCCGAGTTTTGGAAGGATCGGGTTGTTNCG
rJMSF023J13+ NTCGTTNAACGTGANTATGAACAACAGCAGCCCGAGTTNNGGAAGNATCNGGTTGTT
rJMSF049K12+ ATCGTTTAACGCGACTATGAACAACAGCAGCCCGAGTTTTGGAAGGATCGGGTTGTTTGG
____________________________________________________________
consensus ATCGTTTAACGTGACTATGAACAACAGCAGCCCGAGTTTTGGAAGGATCGGGTTGTTTGG
. : . : . : . : . : . :
rJMSF041H14+ AAACCANGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGNCAAAATTTCGTATAACAC
rJMSF049K12+ AAACCATGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGTCAAAATTTCGTATAACAC
____________________________________________________________
consensus AAACCATGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGTCAAAATTTCGTATAACAC
. : . : . : . : . : . :
rJMSF041H14+ AA
rJMSF049K12+ AAGCTAGTGCTTGATTGATACTTCTTCTCATCTTGTTATTTTGTATTTTTTGTATGCCCA
____________________________________________________________
consensus AAGCTAGTGCTTGATTGATACTTCTTCTCATCTTGTTATTTTGTATTTTTTGTATGCCCA
. : . : . : . : . : . :
rJMSF049K12+ AATTTTTTGAGTTATTAGCTCTGTAAAGATGTGTCCAAATGTAGATATAACTTTACTGCC
____________________________________________________________
consensus AATTTTTTGAGTTATTAGCTCTGTAAAGATGTGTCCAAATGTAGATATAACTTTACTGCC