Previous Contig 013845:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023J13Sequence268002992 (3)204013845 (3)gb:AB017065_15133792e-07Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16.>gb:BT014856_1641
JMSF041H14Sequence351013845 (3)gb:AB017065_15133796e-24Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16.>gb:BT014856_1641
JMSF049K12Sequence597020496gb:AB017065_15133791e-81Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16.>gb:BT014856_1641690013845 (3)gb:AP003106_18247624e-61Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P066

Alignment

This contig is upended


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rJMSF049K12+                                        GACAACAGCATCTGTGTATGACAAAGGCGG
                      ____________________________________________________________
consensus                                           GACAACAGCATCTGTGTATGACAAAGGCGG
 
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rJMSF049K12+          AGGCCCCATACTGGCCCAGCGTGCGTATGCTAACCCCGACGTGAACCAATCTCCTGCAAC
                      ____________________________________________________________
consensus             AGGCCCCATACTGGCCCAGCGTGCGTATGCTAACCCCGACGTGAACCAATCTCCTGCAAC
 
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rJMSF049K12+          ACCTTTTGATATGGGAAGTAGTNTCGTGAATGCAACTGCGGCATTGGATCCAGGGNNTAT
                      ____________________________________________________________
consensus             ACCTTTTGATATGGGAAGTAGTNTCGTGAATGCAACTGCGGCATTGGATCCAGGGNNTAT
 
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rJMSF049K12+          TCTTGATTCAAGCTACAATGACTATATGTCATTTCTGTGTGGCATCAACGGATCCACCCC
                      ____________________________________________________________
consensus             TCTTGATTCAAGCTACAATGACTATATGTCATTTCTGTGTGGCATCAACGGATCCACCCC
 
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rJMSF041H14+                                                           GGCATGGACCT
rJMSF049K12+          TGTGGTTCTGAACTACACGAGCGAGAGCTGTGGCACCTCCACTTTGACTGGCATGGACCT
                      ____________________________________________________________
consensus             TGTGGTTCTGAACTACACGAGCGAGAGCTGTGGCACCTCCACTTTGACTGGCATGGACCT
 
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rJMSF041H14+          CAACATGCCCTCGATCACAATTNCCAGGNTGANCCNATCCCGAGTGGTTCAACGAACCCT
rJMSF023J13+                                                       GGTTCAACGAACCCT
rJMSF049K12+          CAACATGCCCTCGATCACAATTGCCAGGCTGAACCAATCCCGAGTGGTTCAACGAACCCT
                      ____________________________________________________________
consensus             CAACATGCCCTCGATCACAATTGCCAGGCTGAACCAATCCCGAGTGGTTCAACGAACCCT
 
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rJMSF041H14+          GACTAACGTGGGNGGCAGCGAATCATATGTNGTTGGGTGGAGTNCGCCNTACGGGGCTTC
rJMSF023J13+          GACNAATGNGGGTGGCAGNGAATCNTATGTTGTTGGNTGGAGTGCGCCTTNCGGGGTTTC
rJMSF049K12+          GACTAATGTGGGTGGCAGCGAATCATATGTTGTTGGGTGGAGTGCGCCTTACGGGGCTTC
                      ____________________________________________________________
consensus             GACTAATGTGGGTGGCAGCGAATCATATGTTGTTGGGTGGAGTGCGCCTTACGGGGCTTC
 
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rJMSF041H14+          GGNGAAGNTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGNTTGAACTTGNTCAT
rJMSF023J13+          GGNGAAGGTAANGCCAACGCGGTTTTGTGTNGGAAGCGGGGAGAGTTTGAACTTGNCCAT
rJMSF049K12+          GGTGAAGGTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGTTTGAACTTGACCAT
                      ____________________________________________________________
consensus             GGTGAAGGTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGTTTGAACTTGACCAT
 
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rJMSF041H14+          ATCGTTTAACGNGACTATGAACAACAGCANCCCGAGTTTTGGAAGGATCGGGTTGTTNCG
rJMSF023J13+          NTCGTTNAACGTGANTATGAACAACAGCAGCCCGAGTTNNGGAAGNATCNGGTTGTT   
rJMSF049K12+          ATCGTTTAACGCGACTATGAACAACAGCAGCCCGAGTTTTGGAAGGATCGGGTTGTTTGG
                      ____________________________________________________________
consensus             ATCGTTTAACGTGACTATGAACAACAGCAGCCCGAGTTTTGGAAGGATCGGGTTGTTTGG
 
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rJMSF041H14+          AAACCANGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGNCAAAATTTCGTATAACAC
rJMSF049K12+          AAACCATGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGTCAAAATTTCGTATAACAC
                      ____________________________________________________________
consensus             AAACCATGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGTCAAAATTTCGTATAACAC
 
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rJMSF041H14+          AA                                                          
rJMSF049K12+          AAGCTAGTGCTTGATTGATACTTCTTCTCATCTTGTTATTTTGTATTTTTTGTATGCCCA
                      ____________________________________________________________
consensus             AAGCTAGTGCTTGATTGATACTTCTTCTCATCTTGTTATTTTGTATTTTTTGTATGCCCA
 
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rJMSF049K12+          AATTTTTTGAGTTATTAGCTCTGTAAAGATGTGTCCAAATGTAGATATAACTTTACTGCC
                      ____________________________________________________________
consensus             AATTTTTTGAGTTATTAGCTCTGTAAAGATGTGTCCAAATGTAGATATAACTTTACTGCC