Previous Contig 013723:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005N03Sequence504007793 (2)gb:AF036309_17629452e-07Arabidopsis thaliana scarecrow-like 14 (SCL14) mRNA, partial cds.682013723 (2)gb:AC097277_17365093e-65Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence.
JMSF047J10Sequence680007793 (2)gb:AF036309_17629451e-07Arabidopsis thaliana scarecrow-like 14 (SCL14) mRNA, partial cds.715013723 (2)gb:AC097277_17365091e-64Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence.

Alignment

This contig is upended


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rJMFF005N03+ G
                      ____________________________________________________________
consensus G
 
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rJMFF005N03+ GAAACGTGCCGGACGAGACGGTAGTGCCGGATAGTCCGAGAGACATTGTACTGGATCTGA
rJMSF047J10+ GTGCCGGACGAGACGGTAGTGCCGGATAGTCCGAGAGACATTGTACTGGATCTGA
                      ____________________________________________________________
consensus GAAACGTGCCGGACGAGACGGTAGTGCCGGATAGTCCGAGAGACATTGTACTGGATCTGA
 
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rJMFF005N03+ TCAGGAAGATCAATCCCGATGTGTTTATCCATGGAGTCGTGAACGGCACATACAACACGC
rJMSF047J10+ TCAGGAAGATCAATCCCGATGTGTTTATCCATGGAGTCGTGAACGGCACATACAACACGC
                      ____________________________________________________________
consensus TCAGGAAGATCAATCCCGATGTGTTTATCCATGGAGTCGTGAACGGCACATACAACACGC
 
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rJMFF005N03+ CGTTCTTCGTCACGCGATTCCGGGAGGCGCTCTTCCACTTCTCCTCCCTGTTCGACATCT
rJMSF047J10+ CGTTCTTCGTCACGCGATTCCGGGAGGCGCTCTTCCACTTCTCCTCCCTGTTCGACATCT
                      ____________________________________________________________
consensus CGTTCTTCGTCACGCGATTCCGGGAGGCGCTCTTCCACTTCTCCTCCCTGTTCGACATCT
 
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rJMFF005N03+ TTGAGGCGACAGTGCCGCGTGAGGACAAGGACCGGCAGCTGTTCGAGGAAATGCTGTATG
rJMSF047J10+ TTGAGGCGACAGTGCCGCGTGAGGACAAGGACCGGCAGCTGTTCGAGGAAATGCTGTATG
                      ____________________________________________________________
consensus TTGAGGCGACAGTGCCGCGTGAGGACAAGGACCGGCAGCTGTTCGAGGAAATGCTGTATG
 
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rJMFF005N03+ GAAGAGATGCGTTGAACGTCATAGCTTGTGAAGGATCGGAGAGAGTGGAGCGGCCAGAAA
rJMSF047J10+ GAAGAGATGCGTTGAACGTCATAGCTTGTGAAGGATCGGAGAGAGTGGAGCGGCCAGAAA
                      ____________________________________________________________
consensus GAAGAGATGCGTTGAACGTCATAGCTTGTGAAGGATCGGAGAGAGTGGAGCGGCCAGAAA
 
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rJMFF005N03+ CGTACAAGCAATGGCAAGTTAGAAGCCTGAGAGCCGGATTCCGGCAGCTGCCGCTTGATC
rJMSF047J10+ CGTACAAGCAATGGCAAGTTAGAAGCCTGAGAGCCGGATTCCGGCAGCTGCCGCTTGATC
                      ____________________________________________________________
consensus CGTACAAGCAATGGCAAGTTAGAAGCCTGAGAGCCGGATTCCGGCAGCTGCCGCTTGATC
 
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rJMFF005N03+ AAGAGATTACCAACTGCGTAAAGGACAAAGTGAAATCGGAATACCACAAGGATTTCTCCA
rJMSF047J10+ AAGAGATTACCAACTGCGTAAAGGACAAAGTGAAATCGGAATACCACAAGGATTTCTCCA
                      ____________________________________________________________
consensus AAGAGATTACCAACTGCGTAAAGGACAAAGTGAAATCGGAATACCACAAGGATTTCTCCA
 
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rJMFF005N03+ TTGATGAAGATGGGAAATGGTTGTTGCAAGGATGGAAAGGGAGGGTTCTTCATGCAGTCT
rJMSF047J10+ TTGATGAAGATGGGAAATGGTTGTTGCAAGGATGGAAAGGGAGGGTTCTTCATGCAGTCT
                      ____________________________________________________________
consensus TTGATGAAGATGGGAAATGGTTGTTGCAAGGATGGAAAGGGAGGGTTCTTCATGCAGTCT
 
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rJMFF005N03+ CATGTTGGAAACCTATTAACTAGTACGATTCCCGAAATCAATATTGTTAGAGATTAAGAT
rJMSF047J10+ CATGTTGGAAACCTATTAACTAGTACGATTCCCGAAATCAATATTGTTAGAGATTAAGAT
                      ____________________________________________________________
consensus CATGTTGGAAACCTATTAACTAGTACGATTCCCGAAATCAATATTGTTAGAGATTAAGAT
 
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rJMFF005N03+ TCGGATTGGAATCATGCCCGTAGAGTTTGACTCCGAGCACAATTGATCCTCCAATCTTAC
rJMSF047J10+ TCGGATTGGAATCATGCCCGTAGAGTTTGACTCCGAGCACAATTGATCCTCCAATCTTNC
                      ____________________________________________________________
consensus TCGGATTGGAATCATGCCCGTAGAGTTTGACTCCGAGCACAATTGATCCTCCAATCTTAC
 
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rJMFF005N03+ AGATGCATTAGTATCCTCCTACTCGAGGATCTTGCAGTTACATTAGTAGCCTGCACTAAG
rJMSF047J10+ AGATGCATTAGTATCCTCCTACTCGAGGATCTTGCAGTTACATTAGTAGCCTGCACTAAG
                      ____________________________________________________________
consensus AGATGCATTAGTATCCTCCTACTCGAGGATCTTGCAGTTACATTAGTAGCCTGCACTAAG
 
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rJMFF005N03+ TTGTATTCTTTTATTCCTCAT
rJMSF047J10+ TTGTATTCTTTTATTCCTCATTTTTGGTTGCTTACTACTTACTAGGAGCAGTCTAAGAAT
                      ____________________________________________________________
consensus TTGTATTCTTTTATTCCTCATTTTTGGTTGCTTACTACTTACTAGGAGCAGTCTAAGAAT