| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004B08 | Sequence | 239 | 004579 (4) | gb:AF282858_1783030 | 2e-06 | Mesembryanthemum crystallinum histone deacetylase (Hdeac1) mRNA, complete cds. | 241 | 013713 (3) | |||
| JMSF047G12 | Sequence | 685 | 004578 (6) | gb:AP004814_1845548 | 2e-49 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P047 | 812 | 013713 (3) | gb:AB011479_1511432 | 2e-16 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5. |
| JMSF051E16 | Sequence | 340 | 013713 (3) | ||||||||
This contig is upended
. : . : . : . : . : . :
rJMSF047G12+ TGGAAGGCACAGACAGGAGTGGTTTGAGATGAAG
____________________________________________________________
consensus TGGAAGGCACAGACAGGAGTGGTTTGAGATGAAG
. : . : . : . : . : . :
rJMSF047G12+ ACATCTGANTCAACAAGGAGGATTAAAGGGAAGCTCTTCAAGACATCCAAAAAGCGAGGC
____________________________________________________________
consensus ACATCTGANTCAACAAGGAGGATTAAAGGGAAGCTCTTCAAGACATCCAAAAAGCGAGGC
. : . : . : . : . : . :
rJMSF047G12+ ACGTAGATACTCTGGGAGCAAGGAAGCTATTAGCAGCAAGTATGCAGCTCTAAAGGAGCA
____________________________________________________________
consensus ACGTAGATACTCTGGGAGCAAGGAAGCTATTAGCAGCAAGTATGCAGCTCTAAAGGAGCA
. : . : . : . : . : . :
rJMSF047G12+ GAGCAAACCTGCAGTGAATACAGAGCAAGCCAACGTGCCCTCTACTAAGGTCTCCTTGCT
____________________________________________________________
consensus GAGCAAACCTGCAGTGAATACAGAGCAAGCCAACGTGCCCTCTACTAAGGTCTCCTTGCT
. : . : . : . : . : . :
rJMSF047G12+ CGACGCTGGCACCTCCAAACCCATTGACAGCGTAAAAGGCCCAACAGGGTTGTTGGCTGC
____________________________________________________________
consensus CGACGCTGGCACCTCCAAACCCATTGACAGCGTAAAAGGCCCAACAGGGTTGTTGGCTGC
. : . : . : . : . : . :
rJMSF047G12+ AAGATGGGCATCAATGAAGGCAGGCCTCCAGACCTTCAAAACAAACTTAGAAGCAAAAGG
____________________________________________________________
consensus AAGATGGGCATCAATGAAGGCAGGCCTCCAGACCTTCAAAACAAACTTAGAAGCAAAAGG
. : . : . : . : . : . :
rJMSF051E16+ GTTCCATTACGCCAATCTCAGGACACCCC
rJMSF047G12+ ATTCCCTCCTTTACGCCAAGTTGGTGAGTTCGTTCCATTACGCCAATCTCAGGACACCCC
____________________________________________________________
consensus ATTCCCTCCTTTACGCCAAGTTGGTGAGTTCGTTCCATTACGCCAATCTCAGGACACCCC
. : . : . : . : . : . :
rJMSF051E16+ TTACNTATCTNGTCTNTCCTNATCCTCATCTGAATCTNTCGATGAGATNTTNCAAAAACT
rJMSF047G12+ TTACCTATCTCGTCTTTCCTCATCCTCATCTGAATCTCTCGATGAGATTTTCCAAAAACT
____________________________________________________________
consensus TTACCTATCTCGTCTTTCCTCATCCTCATCTGAATCTCTCGATGAGATTTTCCAAAAACT
. : . : . : . : . : . :
rJMSF051E16+ GAAACGNCNTGGTGCAGAAGNCGACGATATCATGGATAGCAGGTAACATTCACAAAGCAA
rJMSF004B08+ CGATATCAAGGATAGCAGGTANCATTCACAAAGCAA
rJMSF047G12+ GAAACGACCTGCTGCAGAAGACGACGATATCATGGATAGCAGGTAACATTCACAAAGCAA
____________________________________________________________
consensus GAAACGACCTGGTGCAGAAGACGACGATATCATGGATAGCAGGTAACATTCACAAAGCAA
. : . : . : . : . : . :
rJMSF051E16+ GGATGGCAACAGAAATGTACAGGCCAAGATTACAATTACACANGGTTAAAGGCTTTCTCG
rJMSF004B08+ GGATGGCAACAGAAATGTCCAGGCCAAGATTACAATTACACANGGTTAAAGGCTTTCTCG
rJMSF047G12+ GGATGGCAACAGAAATGTACAGGCCAAGATTACAATTACACATGGTTAAAGGCTTTCTCG
____________________________________________________________
consensus GGATGGCAACAGAAATGTACAGGCCAAGATTACAATTACACATGGTTAAAGGCTTTCTCG
. : . : . : . : . : . :
rJMSF051E16+ NTAGCTTTATACTCCCAGATATAACCACGGAAGCGTATGGAAGAACACTGAAGATAAGTT
rJMSF004B08+ CTAGCTTTATACTCCCAGATATAACCACGGNAGCGTATGGAAGAACACTGAAGATAAGTT
rJMSF047G12+ CTAGCTTTATACTCCCAGATATAACCACGGAAGCGTATGGAAGAACACTGAAGATAAGTT
____________________________________________________________
consensus CTAGCTTTATACTCCCAGATATAACCACGGAAGCGTATGGAAGAACACTGAAGATAAGTT
. : . : . : . : . : . :
rJMSF051E16+ ACTGTCCAAAATCTTAAAGTNGCAATAGATTTAACTTCCA-AGTGTTCATAATATTGTNT
rJMSF004B08+ NCTGTCCAAAA-CTTAANGTTGCAATAGATTTAACTTNCACAGTGTTCATAATATGGTTT
rJMSF047G12+ ACTGTCCAAAA-CTTAAAGTTGCAATAGATTTAACTTCCA-AGTGTTCATAATATTGTTT
____________________________________________________________
consensus ACTGTCCAAAA-CTTAAAGTTGCAATAGATTTAACTTCCA-AGTGTTCATAATATTGTTT
. : . : . : . : . : . :
rJMSF051E16+ TCTAT
rJMSF004B08+ TCTATNNACATTATTCTTCCATACTG
rJMSF047G12+ TCTATAAACATTATTCTTCCATACTGTCCGACCGCAGCTAATCCCAATTTTGATCCACCT
____________________________________________________________
consensus TCTATAAACATTATTCTTCCATACTGTCCGACCGCAGCTAATCCCAATTTTGATCCACCT
. : . : . : . : . : . :
rJMSF047G12+ AATAGTGCGGTTTATATCTTATGTGTAGTTTGCATACTCTTAAATCGTGGATACAAATTC
____________________________________________________________
consensus AATAGTGCGGTTTATATCTTATGTGTAGTTTGCATACTCTTAAATCGTGGATACAAATTC