Previous Contig 013629:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044E04Sequence643007693 (3)pir|T06604|T066041e-38hypothetical protein F16J13.40 - Arabidopsis thaliana>gb:ATCHRIV33_1544962 Arabi506013629 (3)pir|T06604|T066045e-04hypothetical protein F16J13.40 - Arabidopsis thaliana>gb:ATCHRIV33_1544962 Arabi
JMSF024M01Sequence684007693 (3)pir|T06604|T066045e-52hypothetical protein F16J13.40 - Arabidopsis thaliana>gb:ATCHRIV33_1544962 Arabi691013629 (3)pir|T06604|T066043e-09hypothetical protein F16J13.40 - Arabidopsis thaliana>gb:ATCHRIV33_1544962 Arabi
JMSF045O11Sequence719007693 (3)pir|T06604|T066049e-53hypothetical protein F16J13.40 - Arabidopsis thaliana>gb:ATCHRIV33_1544962 Arabi545013629 (3)pir|T06604|T066040.001hypothetical protein F16J13.40 - Arabidopsis thaliana>gb:ATCHRIV33_1544962 Arabi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024M01+ TCATATAGAGC
                      ____________________________________________________________
consensus TCATATAGAGC
 
. : . : . : . : . : . :
rJMSF024M01+ CTTCAGTTCATTCAAGAGATGAACATTGTAATATGCCTCTGATGCATATGGCTCCAATGA
                      ____________________________________________________________
consensus CTTCAGTTCATTCAAGAGATGAACATTGTAATATGCCTCTGATGCATATGGCTCCAATGA
 
. : . : . : . : . : . :
rJMSF024M01+ TGTATCCTGGTTTACTTTACCAGCATCAAATTGATGCAAGTAGATTCCATGCTGATTGCC
                      ____________________________________________________________
consensus TGTATCCTGGTTTACTTTACCAGCATCAAATTGATGCAAGTAGATTCCATGCTGATTGCC
 
. : . : . : . : . : . :
rJMSF024M01+ ATGGTGCAGATGGTATGTTTCTACCTGAGGACTTGTGTATTGCTTCTGGAGCCTCAAAAT
rJMFF044E04+ CAAAAT
rJMSF045O11+ CAAAAT
                      ____________________________________________________________
consensus ATGGTGCAGATGGTATGTTTCTACCTGAGGACTTGTGTATTGCTTCTGGAGCCTCAAAAT
 
. : . : . : . : . : . :
rJMSF024M01+ GGAAGCAGTCTGGATATTCTCAGGGAAGCAGAAGCGTCACAAATATTCATGAGGGCCCAA
rJMFF044E04+ GGAAGCAGTCTGGATATTCTCAGGGAAGCAGAAGCGTCACAAATATTCATGAGGGCCCAA
rJMSF045O11+ GGAAGCAGTCTGGATATTCTCAGGGAAGCAGAAGCGTCACAAATATTCATGAGGGCCCAA
                      ____________________________________________________________
consensus GGAAGCAGTCTGGATATTCTCAGGGAAGCAGAAGCGTCACAAATATTCATGAGGGCCCAA
 
. : . : . : . : . : . :
rJMSF024M01+ ATCTTTCTTCTCGATTTGATGTTTTGGGCTTCTCAGGTGAAAGTCCTCATGCTAGTACTC
rJMFF044E04+ ATCTTTCTTCTCGATTTGATGTTTTGGGCTTCTCAGGTGAAAGTCCTCATGCTAGTACTC
rJMSF045O11+ ATCTTTCTTCTCGATTTGATGTTTTGGGCTTCTCAGGTGAAAGTCCTCATGCTAGTACTC
                      ____________________________________________________________
consensus ATCTTTCTTCTCGATTTGATGTTTTGGGCTTCTCAGGTGAAAGTCCTCATGCTAGTACTC
 
. : . : . : . : . : . :
rJMSF024M01+ TCACTGATGAAGATATCCTAGACATGACATATGAAGAGTACCTTGAAGCTCATAGCAGAG
rJMFF044E04+ TCACTGATGAAGATATCCTAGACATGACATATGAAGAGTACCTTGAAGCTCATAGCAGAG
rJMSF045O11+ TCACTGATGAAGATATCCTAGACATGACATATGAAGAGTACCTTGAAGCTCATAGCAGAG
                      ____________________________________________________________
consensus TCACTGATGAAGATATCCTAGACATGACATATGAAGAGTACCTTGAAGCTCATAGCAGAG
 
. : . : . : . : . : . :
rJMSF024M01+ GGAACAAAAGAGTACGCAATCATGTCTCAGGACCATCAGGGAGTACACAGCAGTCATCTA
rJMFF044E04+ GGAACAAAAGA------------GTCTCAGGACCATCAGGGAGTACACAGCAGTCATCTA
rJMSF045O11+ GGAACAAAAGAGTACGCAATCATGTCTCAGGACCATCAGGGAGTACACAGCAGTCATCTA
                      ____________________________________________________________
consensus GGAACAAAAGAGTACGCAATCATGTCTCAGGACCATCAGGGAGTACACAGCAGTCATCTA
 
. : . : . : . : . : . :
rJMSF024M01+ TCAGCAAAGAAAATTGTGAAGAGTCGCAGTCGGGCTGTAGTTCTAAGAAAAGGAGTTGCG
rJMFF044E04+ TCAGCAAAGAAAATTGTGAAGAGTCGCAGTCGGGCTGTAGTTCTAAGAAAAGGAGTTGCG
rJMSF045O11+ TCAGCAAAGAAAATTGTGAAGAGTCGCAGTCGGGCTGTAGTTCTAAGAAAAGGAGTTGCG
                      ____________________________________________________________
consensus TCAGCAAAGAAAATTGTGAAGAGTCGCAGTCGGGCTGTAGTTCTAAGAAAAGGAGTTGCG
 
. : . : . : . : . : . :
rJMSF024M01+ AACGCAAGTCTGAGTGATGATTGTATGCACCTTCGCAGGCAAGCAGGCAATGGTTTGCCC
rJMFF044E04+ AACGCAAGTCTGAGTGATGATTGTATGCACCTTCGCAGGCAAGCAGGCAATGGTTTGCCC
rJMSF045O11+ AACGCAAGTCTGAGTGATGATTGTATGCACCTTCGCAGGCAAGCAGGCAATGGTTTGCCC
                      ____________________________________________________________
consensus AACGCAAGTCTGAGTGATGATTGTATGCACCTTCGCAGGCAAGCAGGCAATGGTTTGCCC
 
. : . : . : . : . : . :
rJMSF024M01+ TTGAATTTGGTGGCTTAGTATTTAGCTGCAAAGCAGCCTTAAATTCGAACCTATTCTTTT
rJMFF044E04+ TTGAATTTGGTGGCTTAGTATTTAGCTGCAAAGCAGCCTTAAATTCGAACCTATTCTTTT
rJMSF045O11+ TTGAATTTGGTGGCTTAGTATTTAGCTGCAAAGCAGCCTTAAATTCGAACCTATTC-TTT
                      ____________________________________________________________
consensus TTGAATTTGGTGGCTTAGTATTTAGCTGCAAAGCAGCCTTAAATTCGAACCTATTCTTTT
 
. : . : . : . : . : . :
rJMSF024M01+ TTTATTTTGTAAACCTCAAAATTAGGGGTGAATATATGGCACTGTTGTATTATATTGTAC
rJMFF044E04+ TTTATTTTGTAAACCTCAAAATTAGGGGTGAATATATGGCACTGTTGTATTATATTGTAC
rJMSF045O11+ TTTATTTTGTAAACCTCAAAATTAGGGGTGAATATATGGCACTGTTGTATTATATTGTAC
                      ____________________________________________________________
consensus TTTATTTTGTAAACCTCAAAATTAGGGGTGAATATATGGCACTGTTGTATTATATTGTAC
 
. : . : . : . : . : . :
rJMSF024M01+ TGTATTGTTGTCAAATTCTT
rJMFF044E04+ TGTATTGTTGTCAAATTCTT
rJMSF045O11+ TGTATTGTTGTCAAATTCTTACACCTTGTTGAAATATATTTCAATGGGTGGTTGAATATT
                      ____________________________________________________________
consensus TGTATTGTTGTCAAATTCTTACACCTTGTTGAAATATATTTCAATGGGTGGTTGAATATT