| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001M06 | Sequence | 418 | 004881 (8) | gb:AY056191_1563515 | 7e-53 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, | 664 | 013628 (7) | gb:AY056191_1563515 | 2e-59 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, |
| JMSF004K05 | Sequence | 391 | 004881 (8) | gb:AY056191_1563515 | 2e-48 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, | 481 | 013628 (7) | gb:AY056191_1563515 | 1e-28 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, |
| JMSF007G06 | Sequence | 392 | 004881 (8) | gb:AY056191_1563515 | 7e-44 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, | 757 | 013628 (7) | gb:AY056191_1563515 | 2e-77 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, |
| JMSF029C19 | Sequence | 702 | 004881 (8) | gb:AY056191_1563515 | e-100 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, | 775 | 013628 (7) | gb:AY056191_1563515 | 1e-79 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, |
| JMSF032K05 | Sequence | 603 | 004881 (8) | gb:AY056191_1563515 | 4e-73 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, | 650 | 013628 (7) | gb:AY056191_1563515 | 1e-55 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, |
| JMSF037J14 | Sequence | 639 | 004881 (8) | gb:AY056191_1563515 | 1e-87 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, | 725 | 013628 (7) | gb:AY056191_1563515 | 2e-63 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, |
| JMSF045N15 | Sequence | 758 | 004881 (8) | gb:AY056191_1563515 | e-108 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, | 751 | 013628 (7) | gb:AY056191_1563515 | 4e-67 | Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, |
This contig is upended
. : . : . : . : . : . :
rJMSF029C19+ ATCAAACCACTGCCATGGCAAATCGCACTGTTATTGTTGACAATAACACCTGGA
____________________________________________________________
consensus ATCAAACCACTGCCATGGCAAATCGCACTGTTATTGTTGACAATAACACCTGGA
. : . : . : . : . : . :
rJMSF029C19+ ACAACACACACATTGCTACTGTGGGAACAGCCATGTCATCACCTG--AAAAGGCAGCATG
rJMSF007G06+ ACACACACATTGCTACTGTGGGAACAGCCATGTCATCACCTG--AAAAGGCAGCATG
rJMSF037J14+ GGCAGCATG
rJMSF045N15+ AGCCATGTCATCACCTGNAAAAGGGCAGCATG
____________________________________________________________
consensus ACAACACACACATTGCTACTGTGGGAACAGCCATGTCATCACCTG--AAAAGGCAGCATG
. : . : . : . : . : . :
rJMSF032K05+ GTCTTTGGATGTCAAATATGTTCTTGTTGTATTTGGAGGCCTTGTTG
rJMSF029C19+ GGATATA-TTCCAGTCTTTGGATGTCAAATATGTTCTTGTTGTATTTGGAGGCCTTGTTG
rJMSF007G06+ GGATATA-TTCCAGTCTTTGGATGTCAAATATATTCTTGTTGTATTTGGAGGCCTTGTTG
rJMSF037J14+ GGATATA-TTCCAGTCTTTGGATGTCAAATATGTTCTTGTTGTATTNGGAGGCCTTGTTG
rJMSF001M06+ GTATTTGGAGGCCTTGTTG
rJMSF045N15+ GGATATATTTCCAGTCTTTGGATGTCAAATATGTTCTTGNTGTATTTGGAGGCCTTGTTG
____________________________________________________________
consensus GGATATA-TTCCAGTCTTTGGATGTCAAATATGTTCTTGTTGTATTTGGAGGCCTTGTTG
. : . : . : . : . : . :
rJMSF032K05+ GGTACCCCAGTGATGATATCAACAAGTTCCTATGGATGGTTCGAATTGGAGGAGGGGTAT
rJMSF029C19+ GGTACCCCAGTGATGATATCAACAAGTTCCTATGGATGGTTCGAATTGGAGGAGGGGTAT
rJMSF007G06+ GGTACCCCAGTGATGATATCAACAAGTTCCTATGGATGGTTCGAATTGGAGGAGGGGTAT
rJMSF037J14+ GGTACCCCAGTGATGATATCAACAAGTTCCTATGGATGGTTCGAATTGGAGGAGGGGTAT
rJMSF001M06+ GGTACCCCAGTGATGATATCAACAAGTTCCTATGGATGGTTCGAATTGGAGGAGGGGTAT
rJMSF045N15+ GGTACCCCAGTGATGATATCAACAAGTTCCTATGGATGGTTCGAATTGGAGGAGGGGTAT
____________________________________________________________
consensus GGTACCCCAGTGATGATATCAACAAGTTCCTATGGATGGTTCGAATTGGAGGAGGGGTAT
. : . : . : . : . : . :
rJMSF032K05+ TTCCTCACATCAAGGAACCTGATTATCTGAGGGATGGTCAGTACCGCATTGATTCTCAAG
rJMSF029C19+ TTCCTCACATCAAGGAACCTGATTATCTGAGGGATGGTCAGTACCGCATTGATTCTCAAG
rJMSF007G06+ TTCCTCACATCAAGGAACCTGATTATCTGAGGGATGGTCAGTACCGCATTGATTCTCAAG
rJMSF037J14+ TTCCTCACATCAAGGAACCTGATTATCTGAGGGATGGTCAGTACCGCATTGATTCTCAAG
rJMSF001M06+ TTCCTCACATCAAGGAACCTGATTATCTGAGGGATGGTCAGTACCGCATTGATTCTCAAG
rJMSF045N15+ TTCCTCACATCAAGGAACCTGATTATCTGAGGGATGGTCAGTACCGCATTGATTCTCAAG
____________________________________________________________
consensus TTCCTCACATCAAGGAACCTGATTATCTGAGGGATGGTCAGTACCGCATTGATTCTCAAG
. : . : . : . : . : . :
rJMSF032K05+ CCACTCCAACTATGCTAAACTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
rJMSF029C19+ CCACTCCAACTATGCTAAACTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
rJMSF004K05+ CTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
rJMSF007G06+ CCACTCCAACTATGCTAAACTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
rJMSF037J14+ CCACTCCAACTATGCTAAACTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
rJMSF001M06+ CCACTCCAACTATGCTAAACTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
rJMSF045N15+ CCACTCCAACTATGCTAAACTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
____________________________________________________________
consensus CCACTCCAACTATGCTAAACTCTCTCATGTACAAGCTGTCATATTACAGATTTGTGGAGA
. : . : . : . : . : . :
rJMSF032K05+ CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
rJMSF029C19+ CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
rJMSF004K05+ CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
rJMSF007G06+ CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
rJMSF037J14+ CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
rJMSF001M06+ CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
rJMSF045N15+ CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
____________________________________________________________
consensus CAGATGGCGGCAAGGGTTTTGATAGAGTTAGGCGGACTGAAATTGGAAAGAAAGTTTTTA
. : . : . : . : . : . :
rJMSF032K05+ AGCTCACTCACTTTGAGGAGGTATTCACCACACACCATTGGATGGTCCGGATATACAAAC
rJMSF029C19+ AGCTCACTCACTTTGAGGAGGTATTCACCACACACCATTGGATGGTCCGGATATACAAAC
rJMSF004K05+ AGCTCACTCACTTTGAGGAGGTATTCACCACACACCATTGGATGGTCCGGATATACAAAC
rJMSF007G06+ AGCTCACTCACTTTGAGGAGGTATTCACCACACACCATTGGATGGTCCGGATATACAAAC
rJMSF037J14+ AGCTCACTCACTTTGAGGAGGTATTCACCACACACCATTGGATGGTCCGGATATACAAAC
rJMSF001M06+ AGCTCACTCACTTTGAGGAGGTATTCACCACACACCANTGGATGGTCCGGATATACAAAC
rJMSF045N15+ AGCTCACTCACTTTGAGGAGGTATTCACCACACACCATTGGATGGTCCGGATATACAAAC
____________________________________________________________
consensus AGCTCACTCACTTTGAGGAGGTATTCACCACACACCATTGGATGGTCCGGATATACAAAC
. : . : . : . : . : . :
rJMSF032K05+ TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATCTAAGTCGGTGAAGTCTA
rJMSF029C19+ TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATCTAAGTCGGTGAAGTCTA
rJMSF004K05+ TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATCTAAGTCGGTGAAGTCTA
rJMSF007G06+ TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATCTAAGTCGGTGAAGTCTA
rJMSF037J14+ TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATCTAAGTCGGTGAAGTCTA
rJMSF001M06+ TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATNTAAGTCGGTGAAGTCTA
rJMSF045N15+ TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATCTAAGTCGGTGAAGTCTA
____________________________________________________________
consensus TAAAGCCCCCAAAGAACAGGATCCGTGGGAAAACAAAGAAATCTAAGTCGGTGAAGTCTA
. : . : . : . : . : . :
rJMSF032K05+ GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
rJMSF029C19+ GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
rJMSF004K05+ GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
rJMSF007G06+ GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
rJMSF037J14+ GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
rJMSF001M06+ GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
rJMSF045N15+ GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
____________________________________________________________
consensus GCAACTCAAAGAGAAGCGGAACAAGAAAGAAGAATCCATGGCACTAGAGAACATTACGAA
. : . : . : . : . : . :
rJMSF032K05+ CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
rJMSF029C19+ CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
rJMSF004K05+ CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
rJMSF007G06+ CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
rJMSF037J14+ CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
rJMSF001M06+ CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
rJMSF045N15+ CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
____________________________________________________________
consensus CTTCTAGTAGAGGATGACTTTTGCAACACATGCTTTGTAGTTTCACATTCGAAGGAATCG
. : . : . : . : . : . :
rJMSF032K05+ AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
rJMSF029C19+ AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
rJMSF004K05+ AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
rJMSF007G06+ AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
rJMSF037J14+ AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
rJMSF001M06+ AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
rJMSF045N15+ AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
____________________________________________________________
consensus AGCTTGAGATTATGCGGTGGTCTCAATGTTCTTTCTCTTTTCACTTACCATCCACGTAGA
. : . : . : . : . : . :
rJMSF032K05+ GACTGCTGAAAGGATTGTTTTGATTAGCAATTCAGAGATTTTAGCTGAGTGTACTAAATC
rJMSF029C19+ GACTGCTGAAAGGATTGTTTTGATTAGCAATTCAGAGATTTTAGCTGAGTGTACTAAATC
rJMSF004K05+ GACTGCTGAAAGGATTGTTTTGATTAGCAATTCAGAGATTTTAGCTGAGTGTACTAAATC
rJMSF007G06+ GACTGCTGAAAGGATTGTTTTGATTAGCAATTCAGAGATTTTAGCTGAGTGTACTAAATC
rJMSF037J14+ GACTGCTGAAAGGATTGTTTTGATTAGCAATTCAGAGATTTTAGCTGAGTGTACTAAATC
rJMSF001M06+ GACTGCTGAAAGGACTTGTTTGATTAGCAATTCNGAGATTTTAGCNGAGTGTACTAAATC
rJMSF045N15+ GACTGCTGAAAGGATTGTTTTGATTAGCAATTCAGAGATTTTAGCTGAGTGTACTAAATC
____________________________________________________________
consensus GACTGCTGAAAGGATTGTTTTGATTAGCAATTCAGAGATTTTAGCTGAGTGTACTAAATC
. : . : . : . : . : . :
rJMSF032K05+ GAA
rJMSF029C19+ GAAT
rJMSF004K05+ GAATGTATTTATATTGCTCA
rJMSF007G06+ GAATGTATTTATATTGCTCATAGACATA-CAGTTCAGTCAAAAT
rJMSF037J14+ GAATGTATTTATATTGCTCATAGACATACCAGTTCAGTCAAAATTTTCTGTG
rJMSF001M06+ GAATGTATTTATATTGCTCATAGACATA-CAGTTCAGTCAAAAT
rJMSF045N15+ GAATGTATTTATATTGCTCATAGACATA-CAGTTCAGTCAAAATTTTCTGTGCACCTTCA
____________________________________________________________
consensus GAATGTATTTATATTGCTCATAGACATA-CAGTTCAGTCAAAATTTTCTGTGCACCTTCA