Previous Contig 013604:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027I18Sequence626007661 (3)gb:AC084221_17333931e-58Arabidopsis thaliana chromosome 1 BAC F14G11 genomic sequence, complete sequence729013604 (3)gb:AP002913_18239167e-27Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P048
JMSF037L12Sequence702007661 (3)gb:AC084221_17333935e-76Arabidopsis thaliana chromosome 1 BAC F14G11 genomic sequence, complete sequence729013604 (3)gb:AP002913_18239165e-28Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P048
JMSF045F04Sequence718007661 (3)gb:AC084221_17333933e-62Arabidopsis thaliana chromosome 1 BAC F14G11 genomic sequence, complete sequence764013604 (3)gb:AP002913_18239161e-26Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P048

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF037L12+ AGAAGGAAGAGT-C
rJMSF027I18+ AGAAGGAAGAGT-C
rJMSF045F04+ GCAACTCATGTTATTAAATGGCCATTCACTAGAAGGAAGAGTCC
                      ____________________________________________________________
consensus GCAACTCATGTTATTAAATGGCCATTCACTAGAAGGAAGAGT-C
 
. : . : . : . : . : . :
rJMSF037L12+ CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
rJMSF027I18+ CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
rJMSF045F04+ CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
                      ____________________________________________________________
consensus CCATCAGAACTTTATTCAATTGGGGTCCATGGTGGAGCTATTGACCTTTCTGATAATAAA
 
. : . : . : . : . : . :
rJMSF037L12+ GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
rJMSF027I18+ GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
rJMSF045F04+ GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
                      ____________________________________________________________
consensus GGGCTGTGTGGTGTGCCTTCTTTACCAGATTGTTCTCTATTTTGGGATAAACATGGTTTA
 
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rJMSF037L12+ TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
rJMSF027I18+ TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
rJMSF045F04+ TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
                      ____________________________________________________________
consensus TCCACTGCTGGTAAAGTTGGTATAGGCATTGCATCTCTGGTAATCTTTTTACTACTGTTG
 
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rJMSF037L12+ TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
rJMSF027I18+ TGCTTGAGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
rJMSF045F04+ TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
                      ____________________________________________________________
consensus TGCTTGGGTTATTGGTGCTACAAGAGGAGGCAAAATGATTATGACTTTGGTCTACCACAT
 
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rJMSF037L12+ GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
rJMSF027I18+ GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
rJMSF045F04+ GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
                      ____________________________________________________________
consensus GAGCTAATGGCACTATCTGCAAAGAGGAATAGATATCATAGGCAAAAATCGTTGATGGCT
 
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rJMSF037L12+ CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
rJMSF027I18+ CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
rJMSF045F04+ CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
                      ____________________________________________________________
consensus CTAGAAATGGAAAGCCAGCATGCCAAAGGATTCATACCGTCTTACAATTCAAACTGAAGG
 
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rJMSF037L12+ CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
rJMSF027I18+ CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
rJMSF045F04+ CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
                      ____________________________________________________________
consensus CAATTTGTACAAGTGGAAAGTACAGGGTTTTTGACAGAATACAGGTCCGATCCAACCTTA
 
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rJMSF037L12+ AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
rJMSF027I18+ AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
rJMSF045F04+ AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
                      ____________________________________________________________
consensus AGATGGTATACACAGCGTTGGTTGATAGTGTGAATACAGTGGTGATGATAGAGATGTGAG
 
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rJMSF037L12+ CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
rJMSF027I18+ CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
rJMSF045F04+ CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
                      ____________________________________________________________
consensus CAGTGCTTTAAAGGATGTGATTTGAGAGGTTTGGCACATCATATCGCCAGCAATATGTAC
 
. : . : . : . : . : . :
rJMSF037L12+ TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
rJMSF027I18+ TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
rJMSF045F04+ TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
                      ____________________________________________________________
consensus TTAAATGGGGTCGGAGTAGTGGTTTTGGTAGTAGAGTGCAATGTATCCTAATCATTCATG
 
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rJMSF037L12+ AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
rJMSF027I18+ AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
rJMSF045F04+ AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
                      ____________________________________________________________
consensus AATGTGCAAAAGGCAAGTGTATGCTATTCACAAACTAATGCATGATGTATCTTACCTAAT
 
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rJMSF037L12+ TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATT
rJMSF027I18+ TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATT
rJMSF045F04+ TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATTTGTA
                      ____________________________________________________________
consensus TCTTTAATTTGGTCATTTCACAGATCAGATATATATATGATGTGAATTCTTCAATTTGTA