Previous Contig 013506:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022C20Sequence674006926 (4)737013506 (3)gb:AP003524_18303803e-38Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P050
JMSF034C17Sequence687006926 (4)735013506 (3)gb:AP003524_18303803e-38Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P050
JMSF043M20Sequence741006926 (4)709013506 (3)gb:AP003524_18303803e-38Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P050

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022C20+ TACTGAAGTGAGCTCTGTTTTGCCAATTCAAAACA
                      ____________________________________________________________
consensus TACTGAAGTGAGCTCTGTTTTGCCAATTCAAAACA
 
. : . : . : . : . : . :
rJMSF022C20+ CACCCAATGGTGGTGTTGATGTTGGGAGTTCAGGGGTATCTTTAGGTTTTCCTTCTCAAA
                      ____________________________________________________________
consensus CACCCAATGGTGGTGTTGATGTTGGGAGTTCAGGGGTATCTTTAGGTTTTCCTTCTCAAA
 
. : . : . : . : . : . :
rJMSF022C20+ CATCCTTGCAAGGCACAGACACTATCTTGCCTCCAGAGAACACTTTGGTCGCATCCACTT
rJMSF034C17+ TCCAGAGAACACTTTGGTCGCATCCACTT
                      ____________________________________________________________
consensus CATCCTTGCAAGGCACAGACACTATCTTGCCTCCAGAGAACACTTTGGTCGCATCCACTT
 
. : . : . : . : . : . :
rJMSF022C20+ CTTCTGCTACTTCTACAGCAACAGC-TTCTAATGTTCCATCTAAAGTTGCTCGTAAAAAG
rJMSF034C17+ CTTCTGCTACTTCTACAGCAACAGC-TTCTAATGTTCCATCTAAAGTTGCTCGTAAAAAG
rJMSF043M20+ TACAGCAACAGCTTTNTAATGTTCCATCTAAAGTTGCTCGTAAAAAG
                      ____________________________________________________________
consensus CTTCTGCTACTTCTACAGCAACAGC-TTCTAATGTTCCATCTAAAGTTGCTCGTAAAAAG
 
. : . : . : . : . : . :
rJMSF022C20+ AAGGGCACTGTTGCTGTAGGCTCGACATTAAGGTCAAATAAAAAAGTCTCCAATTTGGTT
rJMSF034C17+ AAGGGCACTGTTGCTGTAGGCTCGACATTAAGGTCAAATAAAAAAGTCTCCAATTTGGTT
rJMSF043M20+ AAGGGCACTGTTGCTGTAGGCTCGACATTAAGGTCAAATAAAAAAGTCTCCAATTTGGTT
                      ____________________________________________________________
consensus AAGGGCACTGTTGCTGTAGGCTCGACATTAAGGTCAAATAAAAAAGTCTCCAATTTGGTT
 
. : . : . : . : . : . :
rJMSF022C20+ GACAAGTGGAAGGCTGCAAAAGAAGAGCTGCATGCAGAAGAAGAAGAGGAACGTGCAAGT
rJMSF034C17+ GACAAGTGGAAGGCTGCAAAAGAAGAGCTGCATGCAGAAGAAGAAGAGGAACGTGCAAGT
rJMSF043M20+ GACAAGTGGAAGGCTGCAAAAGAAGAGCTGCATGCAGAAGAAGAAGAGGAACGTGCAAGT
                      ____________________________________________________________
consensus GACAAGTGGAAGGCTGCAAAAGAAGAGCTGCATGCAGAAGAAGAAGAGGAACGTGCAAGT
 
. : . : . : . : . : . :
rJMSF022C20+ GCATATGAAATATTAGAGAAGAAACGTCAACGAGAAATTGAGGAATGGCGTGCACAGCAG
rJMSF034C17+ GCATATGAAATATTAGAGAAGAAACGTCAACGAGAAATTGAGGAATGGCGTGCACAGCAG
rJMSF043M20+ GCATATGAAATATTAGAGAAGAAACGTCAACGAGAAATTGAGGAATGGCGTGCACAGCAG
                      ____________________________________________________________
consensus GCATATGAAATATTAGAGAAGAAACGTCAACGAGAAATTGAGGAATGGCGTGCACAGCAG
 
. : . : . : . : . : . :
rJMSF022C20+ ATAGCCAGTGGAGAGGCTAAAGATAATGCTAACTTTCAGCCACTGGGTGGTGATTGGCGA
rJMSF034C17+ ATAGCCAGTGGAGAGGCTAAAGATAATGCTAACTTTCAGCCACTGGGTGGTGATTGGCGA
rJMSF043M20+ ATAGCCAGTGGAGAGGCTAAAGATAATGCTAACTTTCAGCCACTGGGTGGTGATTGGCGA
                      ____________________________________________________________
consensus ATAGCCAGTGGAGAGGCTAAAGATAATGCTAACTTTCAGCCACTGGGTGGTGATTGGCGA
 
. : . : . : . : . : . :
rJMSF022C20+ GAGCGTGTAAAACGAAGAAGAGCTGAAAAGATGAAAGAGACTGAAAAGAAGCCCACTGAT
rJMSF034C17+ GAGCGTGTAAAACGAAGAAGAGCTGAAAAGATGAAAGAGACTGAAAAGAAGCCCACTGAT
rJMSF043M20+ GAGCGTGTAAAACGAAGAAGAGCTGAAAAGATGAAAGAGACTGAAAAGAAGCCCACTGAT
                      ____________________________________________________________
consensus GAGCGTGTAAAACGAAGAAGAGCTGAAAAGATGAAAGAGACTGAAAAGAAGCCCACTGAT
 
. : . : . : . : . : . :
rJMSF022C20+ GGTACTGAAGAAAATCAACAGCCTGATCTTAATGCGTTATCAATAGGTCTTCCATCTGGA
rJMSF034C17+ GGTACTGAAGAAAATCAACAGCCTGATCTTAATGCGTTATCAATAGGTCTTCCATCTGGA
rJMSF043M20+ GGTACTGAAGAAAATCAACAGCCTGATCTTAATGCGTTATCAATAGGTCTTCCATCTGGA
                      ____________________________________________________________
consensus GGTACTGAAGAAAATCAACAGCCTGATCTTAATGCGTTATCAATAGGTCTTCCATCTGGA
 
. : . : . : . : . : . :
rJMSF022C20+ TGGCAGGCATACTGGGATGAGTCGTCGAAACAGGTGTATTATGGAAATGCTGCAACATCG
rJMSF034C17+ TGGCAGGCATACTGGGATGAGTCGTCGAAACAGGTGTATTATGGAAATGCTGCAACATCG
rJMSF043M20+ TGGCAGGCATACTGGGATGAGTCGTCGAAACAGGTGTATTATGGAAATGCTGCAACATCG
                      ____________________________________________________________
consensus TGGCAGGCATACTGGGATGAGTCGTCGAAACAGGTGTATTATGGAAATGCTGCAACATCG
 
. : . : . : . : . : . :
rJMSF022C20+ GAAACAACCTGGACTAGACCAACAACTTGAGAAATGTGTTGTCATTTTTGGTTTTGGTTG
rJMSF034C17+ GAAACAACCTGGACTAGACCAACAACTTGAGAAATGTGTTGTCATTTTTGGTTTTGGTTG
rJMSF043M20+ GAAACAACCTGGACTAGACCAACAACTTGAGAAATGTGTTGTCATTTTTGGTTTTGGTTG
                      ____________________________________________________________
consensus GAAACAACCTGGACTAGACCAACAACTTGAGAAATGTGTTGTCATTTTTGGTTTTGGTTG
 
. : . : . : . : . : . :
rJMSF022C20+ ATGCATTATGTGTGTTCTTGTATTGTAAATATCAGATAATGT
rJMSF034C17+ ATGCATTATGTGTGTTCTTGTATTGTAAATATCAGATAATGTTACATTCATGCAACTTCC
rJMSF043M20+ ATGCATTATGTGTGTTCTTGTATTGTAAATATCAGATAATGTTACATTCATGCAACTTCC
                      ____________________________________________________________
consensus ATGCATTATGTGTGTTCTTGTATTGTAAATATCAGATAATGTTACATTCATGCAACTTCC
 
. : . : . : . : . : . :
rJMSF034C17+ AAGTTTGATTTGATTATAACCTTTCTTTCAAGTCCCAACTTCATCTACTCTCCTTTTTTC
rJMSF043M20+ AAGTTTGATTTGATTATAACCTTTCTTTCAAGTCCCAACTTCATCTACTCTCCTTTTTTC
                      ____________________________________________________________
consensus AAGTTTGATTTGATTATAACCTTTCTTTCAAGTCCCAACTTCATCTACTCTCCTTTTTTC
 
. : . : . : . : . : . :
rJMSF034C17+ CATTGCCTAATTTTGAGTTAATAAGGCTGAGTAGTGGTCATGGTCTT
rJMSF043M20+ CATTGCCTAATTTTGAGTTAATAAGGCTGAGTAGTGGTCATGGTCTTTGTACTTCTAAAA
                      ____________________________________________________________
consensus CATTGCCTAATTTTGAGTTAATAAGGCTGAGTAGTGGTCATGGTCTTTGTACTTCTAAAA