| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024N21 | Sequence | 501 | 013432 (8) | sp|Q9M337|R21B_ARATH | 5e-34 | 40S ribosomal protein S21-2.>pir|T45929|T45929 40S ribosomal protein S21 homolog | 568 | 013432 (8) | sp|Q9M337|R21B_ARATH | 7e-34 | 40S ribosomal protein S21-2.>pir|T45929|T45929 40S ribosomal protein S21 homolog |
| JMFN040D22 | Sequence | 128 | 013432 (8) | ||||||||
| JMSF005A01 | Sequence | 262 | 013432 (8) | sp|P35687|RS21_ORYSA | 1e-11 | 40S ribosomal protein S21.>pir|S38357|S38357 ribosomal protein S21, cytosolic - | |||||
| JMSF005A03 | Sequence | 266 | 004663 (3) | gb:AY663787_1620590 | 3e-20 | Fragaria x ananassa putative UDP-rhamnose:rhamnosyltransferase (srt1) mRNA, comp | 339 | 013432 (8) | gb:AY086689_1571733 | 4e-21 | Arabidopsis thaliana clone 26837 mRNA, complete sequence. |
| JMSF035C02 | Sequence | 568 | 013432 (8) | sp|P35687|RS21_ORYSA | 2e-34 | 40S ribosomal protein S21.>pir|S38357|S38357 ribosomal protein S21, cytosolic - | 520 | 013432 (8) | sp|P35687|RS21_ORYSA | 2e-34 | 40S ribosomal protein S21.>pir|S38357|S38357 ribosomal protein S21, cytosolic - |
| JMSF042K24 | Sequence | 496 | 013432 (8) | sp|P35687|RS21_ORYSA | 1e-34 | 40S ribosomal protein S21.>pir|S38357|S38357 ribosomal protein S21, cytosolic - | |||||
This contig is upended
. : . : . : . : . : . :
JMSF005A01- GGGGGTT
____________________________________________________________
consensus GGGGGTT
. : . : . : . : . : . :
JMSF005A01- TTGGTTGTGCGACGAATATAAGCCAACCTAACGGCTAACGCCTCTGCTCTTTCTTCTCGG
rJMSF035C02+ GCTCTTTCTTCTCGG
JMSF035C02- GCTCTTTCTTCTCGG
rJMSF042K24+ GCTCTTTCTTCTCGG
____________________________________________________________
consensus TTGGTTGTGCGACGAATATAAGCCAACCTAACGGCTAACGCCTCTGCTCTTTCTTCTCGG
. : . : . : . : . : . :
JMSF005A01- TCGCAGCTTCGCCATCTTCTCGCTCCCATTTTTGGTGCTTTAACATTGTACATTTTTGCT
JMFN040D22- CCATCTTCTCGCTCCCATTTTTGGTGCTTTAACATTGTACATTTTTGCT
rJMSF035C02+ TCGCAGCTTCGCCATCTTCTCGCTCCCATTTTTGGTGCTTTAACATTGTACATTTTTGCT
JMFF024N21- TTTTGCT
JMSF035C02- TCGCAGCTTCGCCATCTTCTCGCTCCCATTTTTGGTGCTTTAACATTGTACATTTTTGCT
rJMFF024N21+ TTTTGCT
rJMSF042K24+ TCGCAGCTTCGCCATCTTCTCGCTCCCATTTTTGGTGCTTTAACATTGTACATTTTTGCT
____________________________________________________________
consensus TCGCAGCTTCGCCATCTTCTCGCTCCCATTTTTGGTGCTTTAACATTGTACATTTTTGCT
. : . : . : . : . : . :
JMSF005A01- AGTATCAAATCACTTTGCTAAGATGCAGAACGACGAGGGACAAAATATGGATCTGTACAT
JMFN040D22- AGTATTAAATCACTTTGCTAAGATGCAGAACGACGAGGGACAAAATATGGATCTGTACAT
rJMSF035C02+ AGTATCAAATCACTTTGCTAAGATGCAGAACGACGAGGGACAAAATATGGATCTGTACAT
JMFF024N21- TGTTTCAAATCACGTTGCTAAGATGCAGAACGATGAGGGACAAAATATGGATCTCTATAT
JMSF035C02- AGTATCAAATCACTTTGCTAAGATGCAGAACGACGAGGGACAAAATATGGATCTGTACAT
rJMFF024N21+ TGTTTCAAATCACGTTGCTAAGATGCAGAACGATGAGGGACAAAATATGGATCTCTATAT
rJMSF042K24+ AGTATCAAATCACTTTGCTAAGATGCAGAACGACGAGGGACAAAATATGGATCTGTACAT
____________________________________________________________
consensus AGTATCAAATCACTTTGCTAAGATGCAGAACGACGAGGGACAAAATATGGATCTGTACAT
. : . : . : . : . : . :
JMSF005A01- TCCGAGGAAGTGCTCGGCCACAAATAGGCTGATCACTTCTAAGGATCATGCATCTGTCCA
JMFN040D22- TCCGAGGAAGTGCTCGGCC
rJMSF035C02+ TCCGAGGAAGTGCTCGGCCACAAATAGGCTGATCACTTCTAAGGATCATGCATCTGTCCA
JMFF024N21- CCCGAGGAAGTGCTCGGCCACAAATAGGCTGATCACTTCTAAGGATCATGCATCTGTCCA
rJMSF005A03+ TAAGGATCATGCATCTGTCCA
JMSF035C02- TCCGAGGAAGTGCTCGGCCACAAATAGGCTGATCACTTCTAAGGATCATGCATCTGTCCA
rJMFF024N21+ CCCGAGGAAGTGCTCGGCCACAAATAGGCTGATCACTTCTAAGGATCATGCATCTGTCCA
rJMSF042K24+ TCCGAGGAAGTGCTCGGCCACAAATAGGCTGATCACTTCTAAGGATCATGCATCTGTCCA
____________________________________________________________
consensus TCCGAGGAAGTGCTCGGCCACAAATAGGCTGATCACTTCTAAGGATCATGCATCTGTCCA
. : . : . : . : . : . :
JMSF005A01- GATTAATGTTGGTCA
rJMSF035C02+ GATTAATGTTGGTCATTTGAATGAGAATGGTGTATATGATGGAAAGTACACCACCTTTGC
JMFF024N21- GATAAATGTTGGTCATTTGAATGAGAATGGCGTATATGATGGAAAGTACACCACTTTTGC
rJMSF005A03+ GATTAATGTTGGTCATTTGAATGAGAATGGTGNATATGATGGAAAGTACACCACCTTTGC
JMSF035C02- GATTAATGTTGGTCATTTGAATGAGAATGGTGTATATGATGGAAAGTACACCACCTTTGC
rJMFF024N21+ GATAAATGTTGGTCATTTGAATGAGAATGGCGTATATGATGGAAAGTACACCACTTTTGC
rJMSF042K24+ GATTAATGTTGGTCATTTGAATGAGAATGGTGTATATGATGGAAAGTACACCACCTTTGC
____________________________________________________________
consensus GATTAATGTTGGTCATTTGAATGAGAATGGTGTATATGATGGAAAGTACACCACCTTTGC
. : . : . : . : . : . :
rJMSF035C02+ TTTGTGTGGATTTATTCGTGCACAGGGCGATGCAGATAGTGGTCTTGATAGGCTCTGGCA
JMFF024N21- TTTGTGTGGATTTATTCGTGCGCAGGGAGATGCAGACAGTGGTCTTGATAGGCTCTGGCA
rJMSF005A03+ TTTGTGTGGATTTATTCGTGCACAGGGCGATGCAGATAGTGGTCNNGATAGGCTCTGGCA
JMSF035C02- TTTGTGTGGATTTATTCGTGCACAGGGCGATGCAGATAGTGGTCTTGATAGGCTCTGGCA
rJMFF024N21+ TTTGTGTGGATTTATTCGTGCGCAGGGAGATGCAGACAGTGGTCTTGATAGGCTCTGGCA
rJMSF042K24+ TTTGTGTGGATTTATTCGTGCACAGGGCGATGCAGATAGTGGTCTTGATAGGCTCTGGCA
____________________________________________________________
consensus TTTGTGTGGATTTATTCGTGCACAGGGCGATGCAGATAGTGGTCTTGATAGGCTCTGGCA
. : . : . : . : . : . :
rJMSF035C02+ GAAAAAGAAAGTTGAAGTCCGCCAACAGTGATGTCTTCTGGTGG
JMFF024N21- GAAGAAGAAAGTCGAAGCCCGCGAACAGTAATGTCTTTTGGTGG
rJMSF005A03+ GAAAAAGAAAGTTGAAGTCCGCCAACAGTGATGTCTTCTGGTGG
JMSF035C02- GAAAAAGAAAGTTGAAGTCCGCCAACAGTGATGTCTTCTGGTGG
rJMFF024N21+ GAAGAAGAAAGTCGAAGCCCGCGAACAGTAATGTCTTTTGGTGG
rJMSF042K24+ GAAAAAGAAAGTTGAAGTCCGCCAACAGTGATGTCTTCTGGTGGCTGCGTTTACTGTTGT
____________________________________________________________
consensus GAAAAAGAAAGTTGAAGTCCGCCAACAGTGATGTCTTCTGGTGGCTGCGTTTACTGTTGT
. : . : . : . : . : . :
rJMSF042K24+ GCACATTGTGATGTGCGTTTGGTCTGGTTTTACAATGCCGTACACTCTAAATCATATCCT
____________________________________________________________
consensus GCACATTGTGATGTGCGTTTGGTCTGGTTTTACAATGCCGTACACTCTAAATCATATCCT
. : . : . : . : . : . :
rJMSF042K24+ TGATTTTGAAGTATGAGTTTTGCACAAATATTTGTTGTCTTGTGTTAGAGTCTACTTAAA
____________________________________________________________
consensus TGATTTTGAAGTATGAGTTTTGCACAAATATTTGTTGTCTTGTGTTAGAGTCTACTTAAA