Previous Contig 013303:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF040K02-                                                                   GCGC
JMSF036D02-                                                 GGGAGAGGCCAACTAGGCGCGC
                      ____________________________________________________________
consensus                                                   GGGAGAGGCCAACTAGGCGCGC
 
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JMSF040K02-           ACCACTGAACTGAATCTCCGCCTCTCCGGGAAGAAATGGAAACATCAGTCCCTTCATCGA
JMSF036D02-           ACCACTGAACTGAATCTCCGCCTCTCCGGGAAGAAATGGAAACATCAGTCCCTTCATCGA
                      ____________________________________________________________
consensus             ACCACTGAACTGAATCTCCGCCTCTCCGGGAAGAAATGGAAACATCAGTCCCTTCATCGA
 
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JMSF018J02-                          ACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
JMSF040K02-           TGGCCGGTTTAGACGACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
JMSF036D02-           TGGCCGGTTTAGACGACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
                      ____________________________________________________________
consensus             TGGCCGGTTTAGACGACTGGGATCGTCCTTTCACTGATCTAGAGCTCCTAGAAATCGAAG
 
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JMSF018J02-           CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
JMSF040K02-           CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
JMSF036D02-           CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
                      ____________________________________________________________
consensus             CAGCTTTTCAATCTGCCACCAACAAGCGCAAAGATTCCGATAAGTCCTCCGCTCCCGCTG
 
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JMSF018J02-           CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
JMSF040K02-           CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
JMSF036D02-           CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
                      ____________________________________________________________
consensus             CCGAAGATGAGGTTAACGGCGATGTAAATAAATTTCGCCGGAACCATCGCCGGAGACTGC
 
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JMSF018J02-           CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTAGAAGTCGATTTAAGC
JMSF040K02-           CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTAGAAGTCGATTTAAGC
JMSF036D02-           CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTA-AAGTCGATTTAAGC
                      ____________________________________________________________
consensus             CTGCATCACTCTTCTCCACTTCTTTTTCCCTGTCCCCATGCCCTAGAAGTCGATTTAAGC
 
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JMSF018J02-           ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
JMSF040K02-           ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
JMSF036D02-           ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
                      ____________________________________________________________
consensus             ATCAATTGAATAGGTTCCCAGCACTAGCATTCAGGGGGCGTATTGTATATAGCAGAACTG
 
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JMSF018J02-           CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
JMSF040K02-           CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
JMSF036D02-           CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
                      ____________________________________________________________
consensus             CAGTTGAGGCCGAGAGATCTGCAGCAGAGCTTTTAAATTTTATTGAAACGAGGAAGAGAG
 
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JMSF018J02-           CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
JMSF040K02-           CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
JMSF036D02-           CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
                      ____________________________________________________________
consensus             CAGAAGGTGTAGTTGCTCTGGGATTTGACATTGAATGGAAACCCACTTTCAAAAGAGGTG
 
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JMSF018J02-           TTGCCCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
JMSF040K02-           TTG-CCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
JMSF036D02-           TTG-CCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
rJMSF036D02+                                TTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
                      ____________________________________________________________
consensus             TTG-CCCCTGGGAAAGCGGCTGTTATGCAGATATGTGGGGAGATGAACCGTTGTTATGTC
 
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JMSF018J02-           TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAG                     
JMSF040K02-           TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
JMSF036D02-           TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
rJMSF036D02+          TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
                      ____________________________________________________________
consensus             TTCCACATATTCCATTCTGGAATCCCTCAAAATCTGCAGACACTTCTAGGGAATTCTGCT
 
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JMSF040K02-           ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGNTTTTCTAGATCATAAT
JMSF036D02-           ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGNTTTTCTAGATCATAAT
rJMSF036D02+          ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGTTTTTCTAGATCATAAT
                      ____________________________________________________________
consensus             ACTGTGAAGGTGGGAGTAAGCATCGCGGGTGATGCTCATAAGGTTTTTCTAGATCATAAT
 
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JMSF040K02-           GTACCTG                                                     
JMSF036D02-           GTACCTG                                                     
rJMSF036D02+          GTACCTGTTAGAAATGTGGATGATCTATCTGCGCTAGCCAATCTAAAGATTGGTGGAGTT
                      ____________________________________________________________
consensus             GTACCTGTTAGAAATGTGGATGATCTATCTGCGCTAGCCAATCTAAAGATTGGTGGAGTT
 
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rJMSF036D02+          CCCAAAAATTGGAGTCTAGCATCATTGACAGAAACACTCCTTTGCAAACAGCTCCCTAAG
rJMSF018J02+                                                           AGCTCCCTAAG
rJMSF040K02+                                                           AGCTCCCTAAG
                      ____________________________________________________________
consensus             CCCAAAAATTGGAGTCTAGCATCATTGACAGAAACACTCCTTTGCAAACAGCTCCCTAAG
 
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rJMSF036D02+          CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTAAAT
rJMSF018J02+          CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTAAAT
rJMSF040K02+          CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTNAAT
                      ____________________________________________________________
consensus             CCAAACCATATAAGATTGGGAAATTGGGAGACTCCAGTTTTATCAAAAGAACACCTAAAT
 
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rJMSF036D02+          TATGCTGCCACAGATGCTTTTGTTTCATGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
rJMSF018J02+          TATGCTGCCACAGATGCTTTTGTTTCATGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
rJMSF040K02+          TATGCTGCCACAGATGCTTTTGTTTCANGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
                      ____________________________________________________________
consensus             TATGCTGCCACAGATGCTTTTGTTTCATGGCACCTATATCAGGCGTTGAAGAGCCTTCCT
 
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rJMSF036D02+          GAGGCTGTTGATAATAAGAGCAACGAACCAGAGCATGTGAGCAGTGAGTGAGATGTGATT
rJMSF018J02+          GAGGCTGTTGATAATAAGAGCAACGAACCAGAGCATGTGAGCAGTGAGTGAGATGTGATT
rJMSF040K02+          GAGGCTGTNGATAATAAGAGCAACGAACCAGAGCANGTGAGCAGTGAGTGAGANGTGATT
                      ____________________________________________________________
consensus             GAGGCTGTTGATAATAAGAGCAACGAACCAGAGCATGTGAGCAGTGAGTGAGATGTGATT
 
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rJMSF036D02+          GTCAACTATTGTTTGAATAGTAGTGGCGGCTGTAACATCAGTTACATCTGGACTATTAAA
rJMSF018J02+          GTCAACTATTGTTTGAATAGTAGTGGCGGCTGTAACATCAGTTACATCTGGACTATTAAA
rJMSF040K02+          GTCAACTATTGTTTGAATTGTAGTGGCGGCTGTAACATCAGTTACATCTGGANTATTAAA
                      ____________________________________________________________
consensus             GTCAACTATTGTTTGAATAGTAGTGGCGGCTGTAACATCAGTTACATCTGGACTATTAAA
 
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rJMSF036D02+          TTTCGCGCTTATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
rJMSF018J02+          TTTCGCGCTTATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
rJMSF040K02+          TTTCGCGCTNATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
                      ____________________________________________________________
consensus             TTTCGCGCTTATCTGGTCCAGTCCAAGTGTCCAACCATCTTGCTTGATGCTGTTATATAT
 
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rJMSF036D02+          CCATTTGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTAATGAGGTAC
rJMSF018J02+          CCATTTGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTAATGAGGTAC
rJMSF040K02+          CCATTNGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTANTGAGGTAC
                      ____________________________________________________________
consensus             CCATTTGCTCTAGCCAAACCTTTTCTTATCCAGAGGCACAAGTCACTGCTAATGAGGTAC
 
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rJMSF036D02+          TTTTAGCTAGTGCAGTGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCT
rJMSF018J02+          TTTTAGCTAGTGCAGTGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCT
rJMSF040K02+          TTTTAGCTAGNGCAGNGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCN
                      ____________________________________________________________
consensus             TTTTAGCTAGTGCAGTGCATCCTGAACCTTATTGGAGGAGTGTTATCAGCTTCTCAGTCT
 
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rJMSF036D02+          GGATCATATTACTGAA                                            
rJMSF018J02+          GGATCATATTACTGAATTAGTTCATAGCTATTCGTTTGGTTAAAGTTATTCTTCTGTGAT
rJMSF040K02+          GGATCATATTACTGAANTAGTTCATAGCTATTCGTTTGGTTAAAGTTATTCTTCTGTGAT
                      ____________________________________________________________
consensus             GGATCATATTACTGAATTAGTTCATAGCTATTCGTTTGGTTAAAGTTATTCTTCTGTGAT
 
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rJMSF018J02+          AAGAAATGGTGTTCT-TTGGTTTTTACCCATCTTTCTCTCTTGAAATCAATGTTGAGAAA
rJMSF040K02+          AAGAAATGGTGTTCTATTGGTTTNTACCCATCTTTCTCTCTTGAAATCAATGTTGAGAAA
                      ____________________________________________________________
consensus             AAGAAATGGTGTTCTATTGGTTTTTACCCATCTTTCTCTCTTGAAATCAATGTTGAGAAA
 
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rJMSF018J02+          TTGAGTCTTTTCTT-CTATGCTGTGATATGT                             
rJMSF040K02+          TTGAGTCTTTTCTTCCTATGCTGTGATATGTTNCTGAATTTGCTGCCCCCTGCAAAAAGA
                      ____________________________________________________________
consensus             TTGAGTCTTTTCTTCCTATGCTGTGATATGTTNCTGAATTTGCTGCCCCCTGCAAAAAGA