Previous Contig 012925:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001H13Sequence428004322 (5)gb:AB006701_15099321e-04Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP9.727012925 (5)gb:AB015476_15125972e-41Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6.>gb:AY091118_15743
JMSF013E16Sequence451004322 (5)gb:AB006701_15099321e-04Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP9.756012925 (5)gb:AB015476_15125972e-43Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6.>gb:AY091118_15743
JMSF032P23Sequence661004322 (5)gb:AB013387_15120203e-07Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18G13.575012925 (5)gb:AY064059_15659971e-26Arabidopsis thaliana unknown protein (At1g64610) mRNA, complete cds.>gb:AY096369
JMSF033J17Sequence617004322 (5)gb:AB013387_15120202e-07Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18G13.658012925 (5)gb:AB015476_15125971e-26Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6.>gb:AY091118_15743
JMSF034D23Sequence529004322 (5)gb:AB015476_15125973e-04Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6.>gb:AY091118_15743618012925 (5)gb:AY064059_15659972e-27Arabidopsis thaliana unknown protein (At1g64610) mRNA, complete cds.>gb:AY096369

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF013E16+ TCGAGTATGCCTGCAAGGGAAGAAAAAGCTTCCTCACAATAG
rJMSF001H13+ TTCCTCACAATAG
                      ____________________________________________________________
consensus TCGAGTATGCCTGCAAGGGAAGAAAAAGCTTCCTCACAATAG
 
. : . : . : . : . : . :
rJMSF013E16+ AATAGTCGGATTTCAGTTCTGCCCAGATGACACAAGCAAAGTTATGGTTACTTCAGCTGA
rJMSF001H13+ AATAGTCGGATTTCAGTTCTGCCCAGATGACACAAGCAAAGTTATGGTTACTTCAGCTGA
                      ____________________________________________________________
consensus AATAGTCGGATTTCAGTTCTGCCCAGATGACACAAGCAAAGTTATGGTTACTTCAGCTGA
 
. : . : . : . : . : . :
rJMSF013E16+ TTCGCAGATTAGAATACTTAACGGCTCCAATATCATCTGCAAATTCAAAGGGGTCCGAAA
rJMSF033J17+ AGGGGTCCGAAA
rJMSF001H13+ TTCGCAGATTAGAATACTTAACGGCTCCAATATCATCTGCAAATTCAAAGGGGTCCGAAA
rJMSF034D23+ TCCGAAA
                      ____________________________________________________________
consensus TTCGCAGATTAGAATACTTAACGGCTCCAATATCATCTGCAAATTCAAAGGGGTCCGAAA
 
. : . : . : . : . : . :
rJMSF013E16+ TTCTGCAGGCCTGGTTCCTGCAACGTTTACATCGGATGGAAAGCACGTTGTCTCGGTTAC
rJMSF033J17+ TTCTGCAGGCCTGGTTCCTGCAACGTTTACATCGGATGAAAAGCACGTTGTCTCGGTTAC
rJMSF032P23+ GCAACGTTTACATCGGATGAAAAGCACGTTGTCTCGGTTAC
rJMSF001H13+ TTCTGCAGGCCTGGTTCCTGCAACGTTTACATCGGATGGAAAGCACGTTGTCTCGGTTAC
rJMSF034D23+ TTCTGCAGGCCTGGTTCCTGCAACGTTTACATCGGATGGAAAGCACGTTGTCTCGGTTAC
                      ____________________________________________________________
consensus TTCTGCAGGCCTGGTTCCTGCAACGTTTACATCGGATGGAAAGCACGTTGTCTCGGTTAC
 
. : . : . : . : . : . :
rJMSF013E16+ TGAAGATTCGAATGTGTGTATCTGGAACTATAACGAGCTGCAGACTAGTAAGACCGTACG
rJMSF033J17+ TGAAGATTCGAATGTGTGTATCTGGAACTATAACGAGCTGCAGACTAGTAAGACCGTACG
rJMSF032P23+ TGAAGATTCGAATGTGTGTATCTGGAACTATAACGAGCTGCAGACTAGTAAGACCGTACG
rJMSF001H13+ TGAAGATTCGAATGTGTGTATCTGGAACTATAACGAGCTGCAGACTAGTAAGACCGTACG
rJMSF034D23+ TGAAGATTCGAATGTGTGTATCTGGAACTATAACGAGCTGCAGACTAGTAAGACCGTACG
                      ____________________________________________________________
consensus TGAAGATTCGAATGTGTGTATCTGGAACTATAACGAGCTGCAGACTAGTAAGACCGTACG
 
. : . : . : . : . : . :
rJMSF013E16+ ATCCTATGAAAGTTTCTATTCCCACAACGCATCAGTGGTGGTACCTTGGTGTGGTGCAGG
rJMSF033J17+ ATCCTATGAAAGTTTCTATTCCCACAACGCATCAGTGGTGGTACCTTGGTGTGGTGCAGG
rJMSF032P23+ ATCCTATGAAAGTTTCTATTCCCACAACGCATCAGTGGTGGTACCTTGGTGTGGTGCAGG
rJMSF001H13+ ATCCTATGAAAGTTTCTATTCCCACAACGCATCAGTGGTGGTACCTTGGTGTGGTGCAGG
rJMSF034D23+ ATCCTATGAAAGTTTCTATTCCCACAACGCATCAGTGGTGGTACCTTGGTGTGGTGCAGG
                      ____________________________________________________________
consensus ATCCTATGAAAGTTTCTATTCCCACAACGCATCAGTGGTGGTACCTTGGTGTGGTGCAGG
 
. : . : . : . : . : . :
rJMSF013E16+ ATCATCGGTGCCAGGAAGCATGTTATCGAGCGGGAAGGCGATATCAACCTCATCGTCATC
rJMSF033J17+ ATCATCGGTGCCAGGAAGCATGTTATCGAGCGGGAAGGCGATATCAACCTCATCGTCATC
rJMSF032P23+ ATCATCGGTGCCAGGAAGCATGTTATCGAGCGGGAAGGCGATATCAACCTCATCGTCATC
rJMSF001H13+ ATCATCGGTGCCAGGAAGCATGTTATCGAGCGGGAAGGCGATATCAACCTCATCGTCATC
rJMSF034D23+ ATCATCGGTGCCAGGAAGCATGTTATCGAGCGGGAAGGCGATATCAACCTCATCGTCATC
                      ____________________________________________________________
consensus ATCATCGGTGCCAGGAAGCATGTTATCGAGCGGGAAGGCGATATCAACCTCATCGTCATC
 
. : . : . : . : . : . :
rJMSF013E16+ GTGTTGTCAGTTCAAGGGATGTGCAACGTGGCCGGAGGAGAAACTCCCTAATTTGAGCCC
rJMSF033J17+ GTGTTGTCAGTTCAAGGGATGTGCAACGTGGCCGGAGGAGAAACTCCCTAATTTGAGCCC
rJMSF032P23+ GTGTTGTCAGTTCAAGGGATGTGCAACGTGGCCGGAGGAGAAACTCCCTAATTTGAGCCC
rJMSF001H13+ GTGTTGTCAGTTCAAGGGATGTGCAACGTGGCCGGAGGAGAAACTCCCTAATTTGAGCCC
rJMSF034D23+ GTGTTGTCAGTTCAAGGGATGTGCAACGTGGCCGGAGGAGAAACTCCCTAATTTGAGCCC
                      ____________________________________________________________
consensus GTGTTGTCAGTTCAAGGGATGTGCAACGTGGCCGGAGGAGAAACTCCCTAATTTGAGCCC
 
. : . : . : . : . : . :
rJMSF013E16+ ATCCCCAGTATTGAAATCGGATTACAAGTTTCTGAAGAGTGCGTGGCAAAGCGCATTGGC
rJMSF033J17+ ATCCCCAGTATTGAAATCGGATTACAAGTTTCTGAAGAGTGCGTGGCAAAGCGCATTGGC
rJMSF032P23+ ATCCCCAGTATTGAAATCGGATTACAAGTTTCTGAAGAGTGCGTGGCAAAGCGCATTGGC
rJMSF001H13+ ATCCCCAGTATTGAAATCGGATTACAAGTTTCTGAAGAGTGCGTGGCAAAGCGCATTGGC
rJMSF034D23+ ATCCCCAGTATTGAAATCGGATTACAAGTTTCTGAAGAGTGCGTGGCAAAGCGCATTGGC
                      ____________________________________________________________
consensus ATCCCCAGTATTGAAATCGGATTACAAGTTTCTGAAGAGTGCGTGGCAAAGCGCATTGGC
 
. : . : . : . : . : . :
rJMSF013E16+ TTCTTCTCCAAATTTATGGGGTCTCGTGGTTGTGACTGCCGGGTTGGATGGATACATCAG
rJMSF033J17+ TTCTTCTCCAAATTTATGGGGTCTCGTGGTTGTGACTGCCGGGTTGGATGGATACATCAG
rJMSF032P23+ TTCTTCTCCAAATTTATGGGGTCTCGTGGTTGTGACTGCCGGGTTGGATGGATACATCAG
rJMSF001H13+ TTCTTCTCCAAATTTATGGGGTCTCGTGGTTGTGACTGCCGGGTTGGATGGATACATCAG
rJMSF034D23+ TTCTTCTCCAAATTTATGGGGTCTCGTGGTTGTGACTGCCGGGTTGGATGGATACATCAG
                      ____________________________________________________________
consensus TTCTTCTCCAAATTTATGGGGTCTCGTGGTTGTGACTGCCGGGTTGGATGGATACATCAG
 
. : . : . : . : . : . :
rJMSF013E16+ AACATTCCTTAACTACGGTTTACCAATTCGTTTTTGATTGAGATCATAACATTATTTTTA
rJMSF033J17+ AACATTCCTTAACTACGGTTTACCAATTCGTTTTTGATTGAGATCATAACATTATTTTTA
rJMSF032P23+ AACATTCCTTAACTACGGTTTACCAATTCGTTTTTGATTGAGATCATAACATTATTTTTA
rJMSF001H13+ AACATTCCTTAACTACGGTTTACCAATTCGTTTTTGATTGAGATCATAACATTATTTTTA
rJMSF034D23+ AACATTCCTTAACTACGGTTTACCAATTCGTTTTTGATTGAGATCATAACATTATTTTTA
                      ____________________________________________________________
consensus AACATTCCTTAACTACGGTTTACCAATTCGTTTTTGATTGAGATCATAACATTATTTTTA
 
. : . : . : . : . : . :
rJMSF013E16+ TTCATTTAGCAGCCAAGGGGCATCCTCCATCTCAGATTCATCAGCATAGAGAATGTTATG
rJMSF033J17+ TTCATTTAGCAGCCAAGGGGCATCCTCCATCTCAGATTCATCAGCATAGAGAATGTTATG
rJMSF032P23+ TTCATTTAGCAGCCAAGGGGCATCCTCCATCTCAGATTCATCAGCATAGAGAATGTTATG
rJMSF001H13+ TTCATTTAGCAGCCAAGGGGCATCCTCCATCTCAGATTCATCAGCATAGAGAATGTTATG
rJMSF034D23+ TTCATTTAGCAGCCAAGGGGCATCCTCCATCTCAGATTCATCAGCATAGAGAATGTTATG
                      ____________________________________________________________
consensus TTCATTTAGCAGCCAAGGGGCATCCTCCATCTCAGATTCATCAGCATAGAGAATGTTATG
 
. : . : . : . : . : . :
rJMSF013E16+ ATTTGTTGTTGTATATGATATTGAATTCTGTAAGTTCCAGCTGAAAGAACACCT
rJMSF033J17+ ATTTGTTGTTGTATATGATATTGAATTCTGTAAGTTCCAGCTGAAAGAACACCT
rJMSF032P23+ ATTTGTTGTTGTATATGATATTGAATTCTGTAAGTTCCAGCTGAAAGAACACCT
rJMSF001H13+ ATTTGTTGTTGTATATGATATTGAATTCTGTAAGTTCCAGCTGAAAGAACACCT
rJMSF034D23+ ATTTGTTGTTGTATATGATATTGAATTCTGTAAGTTCCAGCTGAAAGAACACCTATAATT
                      ____________________________________________________________
consensus ATTTGTTGTTGTATATGATATTGAATTCTGTAAGTTCCAGCTGAAAGAACACCTATAATT