Previous Contig 012869:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007O03Sequence324006431 (6)pir|A84670|A846704e-23probable nucleotide-binding protein [imported] - Arabidopsis thaliana>gb:AC00729694012869 (5)gb:AE005172_8898461e-39Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC006932_153485
JMSF018H08Sequence250006431 (6)pir|A84670|A846705e-19probable nucleotide-binding protein [imported] - Arabidopsis thaliana>gb:AC00729746012869 (5)gb:AE005172_8898464e-46Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC006932_153485
JMSF027C18Sequence607006431 (6)pir|A84670|A846706e-43probable nucleotide-binding protein [imported] - Arabidopsis thaliana>gb:AC00729750012869 (5)gb:AE005172_8898462e-47Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC006932_153485
JMSF032D24Sequence697006431 (6)pir|A84670|A846702e-67probable nucleotide-binding protein [imported] - Arabidopsis thaliana>gb:AC00729564012869 (5)gb:AE005172_8898463e-13Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC006932_153485
JMSF032O08Sequence674006431 (6)pir|A84670|A846703e-75probable nucleotide-binding protein [imported] - Arabidopsis thaliana>gb:AC00729699012869 (5)gb:AE005172_8898462e-34Arabidopsis thaliana chromosome 1, top arm complete sequence.>gb:AC006932_153485

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF018H08+ AAACCGAGTTC
rJMSF027C18+ GGCAAACCGAGTTC
                      ____________________________________________________________
consensus GGCAAACCGAGTTC
 
. : . : . : . : . : . :
rJMSF007O03+ CAAGCCAAAGCCATATGAAC
rJMSF018H08+ CTAGAAAAGTTATAGGGGATGTCTATAAAATTTCTTTGCCCAAGCCAAAGCCATATGAAC
rJMSF027C18+ CTAGAAAAGTTATAGAGGATGTCTATAAAATTTCTTTGCCCAAGCCAAAGCCATATGAAC
                      ____________________________________________________________
consensus CTAGAAAAGTTATAGGGGATGTCTATAAAATTTCTTTGCCCAAGCCAAAGCCATATGAAC
 
. : . : . : . : . : . :
rJMSF007O03+ CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
rJMSF018H08+ CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
rJMSF027C18+ CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
rJMSF032O08+ CATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
                      ____________________________________________________________
consensus CACAATCACGTCCACCTTTGGCATCAGAACTTTTGAGAGCCTATTGTGCATCCCGGGGAT
 
. : . : . : . : . : . :
rJMSF007O03+ ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
rJMSF018H08+ ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
rJMSF027C18+ ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
rJMSF032O08+ ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
                      ____________________________________________________________
consensus ATGTTGCTGCAAGTGGACTGCCTGATGAAACTAGAGCCGCCCGCCAAATTTTGAAGGACT
 
. : . : . : . : . : . :
rJMSF007O03+ ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF018H08+ ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF027C18+ ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF032D24+ ACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
rJMSF032O08+ ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
                      ____________________________________________________________
consensus ATGTTGACGGGAAGCTTCCCCACTTTGAAATGCCACCTGGAATGCCGAACGAGGAAGAAG
 
. : . : . : . : . : . :
rJMSF007O03+ ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF018H08+ ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF027C18+ ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF032D24+ ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
rJMSF032O08+ ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
                      ____________________________________________________________
consensus ATGGTGAAGAGGACGCTGCTGATACAGATGACGACGTTGATGATGCTGGACCCAGCCTGT
 
. : . : . : . : . : . :
rJMSF007O03+ CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF018H08+ CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF027C18+ CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF032D24+ CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
rJMSF032O08+ CAGACCATGATTACTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
                      ____________________________________________________________
consensus CAGACCATGATTCCTCTGATGTTGAAGACCCTTCAGTAAGTGAACTAGAAGATGCACCAA
 
. : . : . : . : . : . :
rJMSF007O03+ GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF018H08+ GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF027C18+ GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF032D24+ GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
rJMSF032O08+ GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
                      ____________________________________________________________
consensus GCCTTGACCACATTCTGAATGATCTAAACACATTCGACATCACTAATGGGCTAGCTGCTT
 
. : . : . : . : . : . :
rJMSF007O03+ CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF018H08+ CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF027C18+ CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF032D24+ CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
rJMSF032O08+ CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
                      ____________________________________________________________
consensus CTAGTAAAGCAACTGTTAAAAAGAAGCCAACAAGGGCACCCCATAAACAGCATAAGAAGC
 
. : . : . : . : . : . :
rJMSF007O03+ CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF018H08+ CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF027C18+ CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF032D24+ CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
rJMSF032O08+ CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCTAG
                      ____________________________________________________________
consensus CACAGAAGAAGAAAGACCGCAGCTGGAGAGTCCAGAACGACGGCGGTGATGGCATGCCAG
 
. : . : . : . : . : . :
rJMSF007O03+ CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF018H08+ CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF027C18+ CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF032D24+ CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
rJMSF032O08+ CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
                      ____________________________________________________________
consensus CTGTAAGGGTTCTCCAAAAGCCAGTTAATACAGGCCCGTTAAACATCTGAACCTATTATC
 
. : . : . : . : . : . :
rJMSF007O03+ AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF018H08+ AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF027C18+ AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF032D24+ AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
rJMSF032O08+ AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
                      ____________________________________________________________
consensus AAGAGATATTTCTTGTTGATTGAATCGAAACAAAAGAAAAACCACGTAGACCTGCTGCCG
 
. : . : . : . : . : . :
rJMSF007O03+ CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF018H08+ CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF027C18+ CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF032D24+ CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
rJMSF032O08+ CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
                      ____________________________________________________________
consensus CCTGTAGCAGTTGACTTCACCTGGTAGTTGACAGTTTTGTTGTAGGTCGTTTGTTTGTCA
 
. : . : . : . : . : . :
rJMSF007O03+ TCATATTTATGATT
rJMSF018H08+ TCATATTTATGATT
rJMSF027C18+ TCATATTTATGATT
rJMSF032D24+ TCATATTTATGATTTGTTAAGTGAAATGAATAGATAATACAATGC
rJMSF032O08+ TCATATTTATGATTTGTTAAGTGAAATGAATAGATAATACAATGCTTTCAGAGCAATCTT
                      ____________________________________________________________
consensus TCATATTTATGATTTGTTAAGTGAAATGAATAGATAATACAATGCTTTCAGAGCAATCTT