clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031L16 | Sequence | 520 | 012838 (4) | gb:AY389648_1178272 | 3e-39 | Hyacinthus orientalis histone H4 mRNA, complete cds. | 489 | 012838 (4) | gb:AY389648_1178272 | 2e-39 | Hyacinthus orientalis histone H4 mRNA, complete cds. |
JMSF032H06 | Sequence | 514 | 012838 (4) | gb:AY389648_1178272 | 3e-39 | Hyacinthus orientalis histone H4 mRNA, complete cds. | 457 | 012838 (4) | gb:AY389648_1178272 | 2e-39 | Hyacinthus orientalis histone H4 mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
JMSF032H06- GACCAATTCTTCAATCTTCCAATCGAAACCCTAGAAA
rJMFF031L16+ AATTCTTCAATCTTCCAATCGAAACCCTAGAAA
JMFF031L16- AATTCTTCAATCTTCCAATCGAAACCCTAGAAA
rJMSF032H06+ AATTCTTCAATCTTCCAATCGAAACCCTAGAAA
____________________________________________________________
consensus GACCAATTCTTCAATCTTCCAATCGAAACCCTAGAAA
. : . : . : . : . : . :
JMSF032H06- GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
rJMFF031L16+ GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
JMFF031L16- GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
rJMSF032H06+ GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
____________________________________________________________
consensus GCTTTTCTCATCAAATTTCTCAGTGCGAAAATGTCAGGCCGTGGAAAGGGAGGCAAGGGC
. : . : . : . : . : . :
JMSF032H06- TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
rJMFF031L16+ TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
JMFF031L16- TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
rJMSF032H06+ TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
____________________________________________________________
consensus TTGGGTAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATC
. : . : . : . : . : . :
JMSF032H06- ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
rJMFF031L16+ ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
JMFF031L16- ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
rJMSF032H06+ ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
____________________________________________________________
consensus ACCAAGCCCGCCATCCGCCGTCTGGCTCGCAGAGGCGGCGTGAAGCGTATCTCCGGCCTC
. : . : . : . : . : . :
JMSF032H06- ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
rJMFF031L16+ ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
JMFF031L16- ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
rJMSF032H06+ ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
____________________________________________________________
consensus ATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCCTCGAAAACGTGATTAGAGATGCG
. : . : . : . : . : . :
JMSF032H06- GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
rJMFF031L16+ GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
JMFF031L16- GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
rJMSF032H06+ GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
____________________________________________________________
consensus GTGACCTACACGGAGCACGCCCGGAGAAAGACCGTTACGGCGATGGACGTGGTTTACGCG
. : . : . : . : . : . :
JMSF032H06- CTCAAGAGGCAGGGAAGGACTTTGTACGG
rJMFF031L16+ CTCAAGAGGCAGGGAAGGACTTTGTACGGATTTGGTGGTTAGGAGCTTCATAAACTAGGG
JMFF031L16- CTCAAGAGGCAGGGAAGGACTTTGTACGG
rJMSF032H06+ CTCAAGAGGCAGGGAAGGACTTTGTACGGATTTGGTGGTTAGGAGCTTCATAAACTAGGG
____________________________________________________________
consensus CTCAAGAGGCAGGGAAGGACTTTGTACGGATTTGGTGGTTAGGAGCTTCATAAACTAGGG
. : . : . : . : . : . :
rJMFF031L16+ TTTATGCTTCTTTTCTGAAATCAGTGGATTATTTGTGCTTCTGCATTAGTTCTATTT
rJMSF032H06+ TTTATGCTTCTTTTCTGAAATCAGTGGATTATTTGTGCTTCTGCATTAGTTCTATTTACT
____________________________________________________________
consensus TTTATGCTTCTTTTCTGAAATCAGTGGATTATTTGTGCTTCTGCATTAGTTCTATTTACT