| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033P18 | Sequence | 300 | 005540 (3) | gb:AF204785_1776657 | 1e-07 | Lycopersicon esculentum ripening regulated protein DDTFR18 (DDTFR18) mRNA, compl | 727 | 012771 (3) | gb:AB011479_1511441 | 2e-84 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.>gb:AY143960_15834 |
| JMSF015F17 | Sequence | 420 | 005540 (3) | gb:AB011479_1511441 | 1e-28 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.>gb:AY143960_15834 | 737 | 012771 (3) | gb:AB011479_1511441 | 2e-88 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.>gb:AY143960_15834 |
| JMSF031D19 | Sequence | 665 | 005540 (3) | gb:AF204785_1776657 | 1e-64 | Lycopersicon esculentum ripening regulated protein DDTFR18 (DDTFR18) mRNA, compl | 769 | 012771 (3) | gb:AB011479_1511441 | 1e-83 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.>gb:AY143960_15834 |
This contig is upended
. : . : . : . : . : . :
rJMFF033P18+ GGAGTCAT
rJMSF015F17+ CATCCGGAGTCAT
____________________________________________________________
consensus CATCCGGAGTCAT
. : . : . : . : . : . :
rJMFF033P18+ GCTATGCTTGGAAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
rJMSF015F17+ GCTATGCTTGGAAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
rJMSF031D19+ AAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
____________________________________________________________
consensus GCTATGCTTGGAAAATTGGTACTACAGAATTTTGATAGTGATGACAGGAAATTTAGAGAA
. : . : . : . : . : . :
rJMFF033P18+ TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
rJMSF015F17+ TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
rJMSF031D19+ TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
____________________________________________________________
consensus TGCTAAAATTGCCGTTGATGCGTTGTCAATATGTATGAACATTAACGGCTGGGAACTGAT
. : . : . : . : . : . :
rJMFF033P18+ GATTCCTCTTGTTTTCTTCGCTGGAANTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
rJMSF015F17+ GATTCCTCTTGGTTTCTTCGCTGGAACTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
rJMSF031D19+ GATTCCTCTTGGTTTCTTCGCTGGAACTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
____________________________________________________________
consensus GATTCCTCTTGGTTTCTTCGCTGGAACTGGTGTTAGGGTAGCAAATGAGTTAGGAGCAGG
. : . : . : . : . : . :
rJMFF033P18+ GAATGGAAAAGGAGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
rJMSF015F17+ GAATGGAAAAGGGGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
rJMSF031D19+ GAATGGAAAAGGAGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
____________________________________________________________
consensus GAATGGAAAAGGAGCAAAGTTCGCGGCATTTGTATCAGTGTCACACTCCATGATAATTGG
. : . : . : . : . : . :
rJMFF033P18+ TCTNTTNTTTTGGCTGCTAATCNTAACNTTCGACAACCAGCTTGCCNTAATTTTCTCCTN
rJMSF015F17+ TCTCTTCTTTTGGCTGCTAATCCTAACCTTCGACAACCAGCTTGCCCTAATTTTCTCCTC
rJMSF031D19+ TCTCTTCTTTTGGCTGCTAATCCTAACCTTCGACAACCAGCTTGCCCTAATTTTCTCCTC
____________________________________________________________
consensus TCTCTTCTTTTGGCTGCTAATCCTAACCTTCGACAACCAGCTTGCCCTAATTTTCTCCTC
. : . : . : . : . : . :
rJMFF033P18+ TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTNTTAGCATTCACCGTTCT
rJMSF015F17+ TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTCTTAGCATTCACCGTTCT
rJMSF031D19+ TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTCTTAGCATTCACCGTTCT
____________________________________________________________
consensus TAGTCAAATTGTTCTTGACGCCGTTCATGACCTCTCATTCCTCTTAGCATTCACCGTTCT
. : . : . : . : . : . :
rJMFF033P18+ TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
rJMSF015F17+ TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
rJMSF031D19+ TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
____________________________________________________________
consensus TCTCAACAGCATTCAACCAATCCTATCAGGGGTGGCTGTTGGATCTGGGTGGCAAGCATA
. : . : . : . : . : . :
rJMFF033P18+ TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
rJMSF015F17+ TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
rJMSF031D19+ TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
____________________________________________________________
consensus TGTAGCATACATAAACCTTGGGTGCTACTATTTGGTTGGAGTCCCTCTTGGCATTATGAT
. : . : . : . : . : . :
rJMFF033P18+ GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
rJMSF015F17+ GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
rJMSF031D19+ GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
____________________________________________________________
consensus GGAATGGGTTTTCCACCAAGGTGTCAAGGGGATATGGGCTGGGATGATCTTTGGTGGAAC
. : . : . : . : . : . :
rJMFF033P18+ AGCAATGCAACCTATAATTTTGTGTATAATCNCCATAAGATGTGATTGGGAAAAAGAGGC
rJMSF015F17+ AGCAATGCAAACTATAATTTTGTGTATAATCACCATAAGATGTGATTGGGAAAAAGAGGC
rJMSF031D19+ AGCAATGCAAACTATAATTTTGTGTATAATCACCATAAGATGTGATTGGGAAAAAGAGGC
____________________________________________________________
consensus AGCAATGCAAACTATAATTTTGTGTATAATCACCATAAGATGTGATTGGGAAAAAGAGGC
. : . : . : . : . : . :
rJMFF033P18+ TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
rJMSF015F17+ TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
rJMSF031D19+ TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
____________________________________________________________
consensus TCAGAAGGCGAATACGCACATTAAGAAGTGGGAAAGCGTGAGTCACGGTGCCTCGTAGAA
. : . : . : . : . : . :
rJMFF033P18+ GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTT
rJMSF015F17+ GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTT
rJMSF031D19+ GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTTT
____________________________________________________________
consensus GTTTAGAATTTTCATTTGTTAATATAATATAATATATGATGGCGAAGATTTACTAATTTT
. : . : . : . : . : . :
rJMSF031D19+ GAGGAATTGATCTTTCATTTAATGGATTTTAATTTTCTATTAATTATAATGAGGGAATCA
____________________________________________________________
consensus GAGGAATTGATCTTTCATTTAATGGATTTTAATTTTCTATTAATTATAATGAGGGAATCA