Previous Contig 012654:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008F13Sequence487006598 (4)gb:AB023033_15153456e-56Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13.500012654 (5)gb:AY070478_15668612e-70Arabidopsis thaliana AT5g49550/K6M13_10 mRNA, complete cds.>gb:BT005815_1638737
JMFF027D01Sequence519006598 (4)gb:AB023033_15153453e-61Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13.525012654 (5)gb:AY070478_15668613e-77Arabidopsis thaliana AT5g49550/K6M13_10 mRNA, complete cds.>gb:BT005815_1638737
JMSF011D05Sequence304006598 (4)gb:AB023033_15153451e-28Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13.539012654 (5)gb:AY070478_15668614e-74Arabidopsis thaliana AT5g49550/K6M13_10 mRNA, complete cds.>gb:BT005815_1638737
JMSF029I20Sequence665006598 (4)gb:AB023033_15153454e-76Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13.766012654 (5)gb:AY070478_1566861e-117Arabidopsis thaliana AT5g49550/K6M13_10 mRNA, complete cds.>gb:BT005815_1638737
JMSF029K23Sequence145012654 (5)gb:AY070478_15668614e-05Arabidopsis thaliana AT5g49550/K6M13_10 mRNA, complete cds.>gb:BT005815_1638737

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011D05+ TGAGGACAGCGGTAGAGCTTCTGGGGTGTTGTTGGCTGATGGAACACCAGT
rJMSF029I20+ ACAGCGGTAGAGCTTCTGGGGTGTTGTTGGCTGATGGAACACCAGT
                      ____________________________________________________________
consensus TGAGGACAGCGGTAGAGCTTCTGGGGTGTTGTTGGCTGATGGAACACCAGT
 
. : . : . : . : . : . :
rJMSF011D05+ GTATTCTTCAGTTGTCTTGTCAAATGCAACTCCTTACAAGACTTTCATGGATCTTGTACC
rJMSF029I20+ GTATTCTTCAGTTGTCTTGTCAAATGCAACTCCTTACAAGACTTTCATGGATCTTGTACC
                      ____________________________________________________________
consensus GTATTCTTCAGTTGTCTTGTCAAATGCAACTCCTTACAAGACTTTCATGGATCTTGTACC
 
. : . : . : . : . : . :
rJMSF011D05+ TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
rJMFF027D01+ TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
rJMFF008F13+ TAAAGATGTGCTTCNTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
rJMSF029I20+ TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
                      ____________________________________________________________
consensus TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
 
. : . : . : . : . : . :
rJMSF011D05+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
rJMFF027D01+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
rJMFF008F13+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
rJMSF029I20+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
                      ____________________________________________________________
consensus AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
 
. : . : . : . : . : . :
rJMSF011D05+ TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
rJMFF027D01+ TCATCGTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
rJMSF029K23+ GCCACAACNTACTGGCTCCATTCACATCGNTTNTGAGTGTTNTGA
rJMFF008F13+ TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
rJMSF029I20+ TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
                      ____________________________________________________________
consensus TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
 
. : . : . : . : . : . :
rJMSF011D05+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
rJMFF027D01+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
rJMSF029K23+ GGACATGGTNGCTNNTGCNCAGNATNCTGAAAATGGAGTNCCATCTCGAAGACCNATAAC
rJMFF008F13+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
rJMSF029I20+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
                      ____________________________________________________________
consensus GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
 
. : . : . : . : . : . :
rJMSF011D05+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
rJMFF027D01+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
rJMSF029K23+ TGAAATGACAATCCNTTCTGTCCCNGATAAGACCATTT
rJMFF008F13+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
rJMSF029I20+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
                      ____________________________________________________________
consensus TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
 
. : . : . : . : . : . :
rJMSF011D05+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
rJMFF027D01+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
rJMFF008F13+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
rJMSF029I20+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
                      ____________________________________________________________
consensus TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
 
. : . : . : . : . : . :
rJMSF011D05+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
rJMFF027D01+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
rJMFF008F13+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCNTGGATT
rJMSF029I20+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
                      ____________________________________________________________
consensus ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
 
. : . : . : . : . : . :
rJMSF011D05+ CAGCTCAT
rJMFF027D01+ CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
rJMFF008F13+ CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
rJMSF029I20+ CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
                      ____________________________________________________________
consensus CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
 
. : . : . : . : . : . :
rJMFF027D01+ TCTGACAGGGGGGAATATCTTCCACGGTTCCATGGGATTAGAT
rJMFF008F13+ TCTGACAGGGGGGAATATCT
rJMSF029I20+ TCTGACAGGGGGGAATATCTTCCACGGTTCCATGGGATTAGATTCATTGTTTCTCATGAG
                      ____________________________________________________________
consensus TCTGACAGGGGGGAATATCTTCCACGGTTCCATGGGATTAGATTCATTGTTTCTCATGAG
 
. : . : . : . : . : . :
rJMSF029I20+ ACCAGTAAAAGGATGGTCAAACTATAGGACTCCACTGCAAGGTTTATATTTGTGCGGTAG
                      ____________________________________________________________
consensus ACCAGTAAAAGGATGGTCAAACTATAGGACTCCACTGCAAGGTTTATATTTGTGCGGTAG
 
. : . : . : . : . : . :
rJMSF029I20+ TGGGGCACATCCTGGTGGAGGAGTAATGGGAGCCCCAGGGCGCAATGCTGCACGCGTGGT
                      ____________________________________________________________
consensus TGGGGCACATCCTGGTGGAGGAGTAATGGGAGCCCCAGGGCGCAATGCTGCACGCGTGGT