Previous Contig 012597:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F23Sequence341005372 (9)gb:AY227203_15910576e-28Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds757012597 (9)gb:AY227203_15910573e-84Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF013B20Sequence267005372 (9)792012597 (9)gb:AY227203_15910572e-84Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF018P02Sequence375005372 (9)gb:AY227203_15910572e-27Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds737012597 (9)gb:AY227203_15910573e-98Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF028A14Sequence681005372 (9)gb:AY227203_15910578e-90Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds789012597 (9)gb:AY227203_15910571e-91Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF028F10Sequence683005372 (9)gb:AY227203_15910578e-90Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds791012597 (9)gb:AY227203_15910578e-91Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF038P14Sequence678005372 (9)gb:AY227203_15910577e-86Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds851012597 (9)gb:AY227203_1591057e-114Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF042L13Sequence740005372 (9)gb:AY227203_15910571e-95Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds841012597 (9)gb:AY227203_1591057e-112Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF044N12Sequence800005372 (9)gb:AY227203_1591057e-106Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds772012597 (9)gb:AY227203_1591057e-107Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds
JMSF051J20Sequence678005372 (9)gb:AF269064_17820566e-82Zea mays T-cytoplasm male sterility restorer factor 2 (rf2) mRNA, rf2-R213 allel800012597 (9)gb:AY227203_1591057e-110Lotus corniculatus aldehyde dehydrogenase 1 precursor (Aldh1) mRNA, complete cds

Alignment

This contig is upended


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rJMSF038P14+ TCGTACTGGAACTGGCTGCAAAAAAGCAATCTGAAGCCAGTTACACTAGAGCTCGGAGGG
rJMSF042L13+ GAGGG
                      ____________________________________________________________
consensus TCGTACTGGAACTGGCTGCAAAAAAGCAATCTGAAGCCAGTTACACTAGAGCTCGGAGGG
 
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rJMSF038P14+ AAATCGCCTTTTCATTATATGCGATGATGCTAATATTGATAGAGCCGTGGAGGATGCACA
rJMSF051J20+ TTTCATTATATGCGATGATGCTAATATTGATAGAGCCGTGGAGGATGCACA
rJMSF044N12+ CGATGATGCTAATATTGATAGAGCCGTGGAGGATGCACA
rJMSF042L13+ AAATCGCC-TTTCATTATATGCGATGATGCTAATATTGATAGAGCCGTGGAGGATGCACA
                      ____________________________________________________________
consensus AAATCGCCTTTTCATTATATGCGATGATGCTAATATTGATAGAGCCGTGGAGGATGCACA
 
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rJMSF038P14+ CTTTGCACTGTTCTTCAATCAGGGCCAATGTTGCTGTGCTGGTTCTCGTACATATGTTCA
rJMSF051J20+ CTTTGCACTGTTCTTCAATCAGGGCCAATGTTGCTGTGCTGGTTCTCGTACATATGTTCA
rJMSF044N12+ CTTTGCACTGTTCTTCAATCAGGGCCAATGTTGCTGTGCTGGTTCTCGTACATATGTTCA
rJMSF018P02+ ATCAGGGCCAATGTTGCTGTGCTGGTTCTCGTACATATGTTCA
rJMSF042L13+ CTTTGCACTGTTCTTCAATCAGGGCCAATGTTGCTGTGCTGGTTCTCGTACATATGTTCA
rJMSF028A14+ CGTACATATGTTCA
rJMSF013B20+ TTCTCGTACATATGTTCA
rJMSF028F10+ CGTACATATGTTCA
                      ____________________________________________________________
consensus CTTTGCACTGTTCTTCAATCAGGGCCAATGTTGCTGTGCTGGTTCTCGTACATATGTTCA
 
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rJMSF038P14+ TGAACGCATATACGACGAGTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF051J20+ TGAACGCATATACGACGAGTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF044N12+ TGAACGCATATACGACGAGTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF018P02+ TGAACGCATATACGACGAGTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF042L13+ TGAACGCATATACGACGAGTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF028A14+ TGAACGCATATACGACGAGTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF013B20+ TGAACGCATATACGACGAG-TTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF002F23+ GTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
rJMSF028F10+ TGAACGCATATACGACGAGNTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
                      ____________________________________________________________
consensus TGAACGCATATACGACGAGTTTGTAGAGAAAGCAAAGGCGCGGGCAATGAGACGCGTTGT
 
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rJMSF038P14+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF051J20+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF044N12+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF018P02+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF042L13+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF028A14+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF013B20+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF002F23+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
rJMSF028F10+ GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
                      ____________________________________________________________
consensus GGGTGATCCCTTCAAAAAAGGTGTAGAGCAAGGGCCTCAGATTGACTCGGAGCAATTTGA
 
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rJMSF038P14+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF051J20+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF044N12+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF018P02+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF042L13+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF028A14+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF013B20+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF002F23+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
rJMSF028F10+ GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
                      ____________________________________________________________
consensus GAAGGTTCTTAGGTACATTAGATCAGGTAAGGAGAGCGGTGCCACCCTTGAATGTGGAGG
 
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rJMSF038P14+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF051J20+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF044N12+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF018P02+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF042L13+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF028A14+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF013B20+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF002F23+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
rJMSF028F10+ CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
                      ____________________________________________________________
consensus CGACAGAATCGGATCAAAAGGTTATTTCATTCAGCCCACCATTTTCTCTGATGTCAAGGA
 
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rJMSF038P14+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF051J20+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF044N12+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF018P02+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF042L13+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF028A14+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF013B20+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF002F23+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
rJMSF028F10+ GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
                      ____________________________________________________________
consensus GGATATGGTGATAGCACAGGACGAGATCTTTGGCCCTGTGCAATGTGTCCTAAAATTCAA
 
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rJMSF038P14+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF051J20+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF044N12+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF018P02+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF042L13+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF028A14+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF013B20+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF002F23+ GGACATTGATGAAGTAATAGAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
rJMSF028F10+ GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
                      ____________________________________________________________
consensus GGACATTGATGAAGTAATAAAGAGGGCGAACAACACGCATTATGGGCTTGCGGCCGGAGT
 
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rJMSF038P14+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF051J20+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF044N12+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF018P02+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF042L13+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF028A14+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF013B20+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF002F23+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
rJMSF028F10+ TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
                      ____________________________________________________________
consensus TTACACGAGCGACATTGATAAGGCAAACACTCTAGCTCGGGGATTGAGAGCTGGGACTGT
 
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rJMSF038P14+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
rJMSF051J20+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
rJMSF044N12+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
rJMSF018P02+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
rJMSF042L13+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
rJMSF028A14+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
rJMSF013B20+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
rJMSF002F23+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTCTTGGTGGGTACAAGATGAG
rJMSF028F10+ GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
                      ____________________________________________________________
consensus GTGGATCAACTGCTATGATGTGTTTGATGCGACGATTCCTTTTGGTGGGTACAAGATGAG
 
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rJMSF038P14+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF051J20+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF044N12+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF018P02+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF042L13+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF028A14+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF013B20+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF002F23+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
rJMSF028F10+ TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
                      ____________________________________________________________
consensus TGGCATTGGGAGGGAGAAGGGTGTGTATAGCCTTAACAACTACTTACAGGTGAAGGCTGT
 
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rJMSF038P14+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF051J20+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF044N12+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF018P02+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF042L13+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF028A14+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF013B20+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF002F23+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
rJMSF028F10+ TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
                      ____________________________________________________________
consensus TGTTACTCCCCTCAAGAACCCAGCCTGGATTTAATTCACCTACTACCCAATCCACCATCG
 
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rJMSF038P14+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGTAACT
rJMSF051J20+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
rJMSF044N12+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
rJMSF018P02+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
rJMSF042L13+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
rJMSF028A14+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
rJMSF013B20+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
rJMSF002F23+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
rJMSF028F10+ GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
                      ____________________________________________________________
consensus GCTTATGCACTTTGTTTGCATAATTTAATTTGGACATATATGAACTTTTTTGGAGT-ACT
 
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rJMSF038P14+ A-CTGTCAAA
rJMSF051J20+ ACCTGTCAAACCCTGTGACCTCCCAT
rJMSF044N12+ A-CTGTCAAA
rJMSF018P02+ ACCTGTCAAACCCTGTGACCTCCCATTTGGGAGAG
rJMSF042L13+ A-CTGTCAAA-CCTGTGACCTCCCATTTGGGAGAGTCAAGTTATGTCG-TTAACCACAAG
rJMSF028A14+ A-CTGTCAAA-CCTGTGACCTCCCATTTGGGAGAGTCAAGTTATGTCGTTTAACCACAAG
rJMSF013B20+ A-CTGTCAAA-CCTGTGACCTCCCATTTGGGAGAGTCAAGTTATGTCGTTTAACCACAAG
rJMSF002F23+ A-CTGTCAAA-CCTGTGACCTCCCATTTGGGAGAGTCAAGTTATGTCGTTTAACCACAAG
rJMSF028F10+ A-CTGTCAAA-CCTGTGACCTCCCATTTGGGAGAGTCAAGTTATGTCGTTTAACCACAAG
                      ____________________________________________________________
consensus A-CTGTCAAA-CCTGTGACCTCCCATTTGGGAGAGTCAAGTTATGTCGTTTAACCACAAG
 
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rJMSF042L13+ A
rJMSF028A14+ ATCTTTGCTCTATTGTCATTCTGTAGCTAATCATATATTTATCATCATACCCGCTCAT
rJMSF013B20+ ATCTTTGCTCTATTGTCATTCTGTAGCTAATCATATATTTATCATCATACCCGCTCAT
rJMSF002F23+ ATCTTTGCTCTATTGTCATTCTGTAGCTAATCATATATTTATCATCATACCCGCTCAT
rJMSF028F10+ ATCTTTGCTCTATTGTCATTCTGTAGCTAATCATATATTTATCATCATACCCGCTCATGT
                      ____________________________________________________________
consensus ATCTTTGCTCTATTGTCATTCTGTAGCTAATCATATATTTATCATCATACCCGCTCATGT