Previous Contig 012492:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026L13Sequence690006401 (2)gb:ATAC009177_15428488e-08Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequenc729012492 (3)gb:AP004274_18396044e-24Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P045
JMSF039C19Sequence720006401 (2)gb:ATAC009177_15428489e-08Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequenc800012492 (3)gb:AP004274_18396043e-38Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P045
JMSF043B04Sequence639012492 (3)gb:AP004274_18396045e-08Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P045

Alignment

This contig is upended


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rJMSF039C19+ ATTTGATATATGCAAGTGCTGTTTTCCTTCATATGC
                      ____________________________________________________________
consensus ATTTGATATATGCAAGTGCTGTTTTCCTTCATATGC
 
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rJMSF039C19+ CCGATAAGCTTGTATGGGCTGGGTTAGAGAGACTTGCTGATAAATTAAAACCTTTAGATG
rJMSF026L13+ AAAACCNTTAGATG
                      ____________________________________________________________
consensus CCGATAAGCTTGTATGGGCTGGGTTAGAGAGACTTGCTGATAAATTAAAACCTTTAGATG
 
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rJMSF039C19+ GTCGTATTTTTGTGTCACACAATATAAAGTTTTGTTCAAGATTAGGAGGAGACGAATGCA
rJMSF026L13+ GTCGTATTTTTGTGTCACACAATATAAAGTTTTGTTCAAGATTAGGAGGAGACGAATGCA
                      ____________________________________________________________
consensus GTCGTATTTTTGTGTCACACAATATAAAGTTTTGTTCAAGATTAGGAGGAGACGAATGCA
 
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rJMSF039C19+ CAAAAAGGCTAAGTAATCTTGGCCTTGAGTATCTTGGGAAGCACACTCATGATAGTTTTC
rJMSF043B04+ AAGTAATCTTGNCCTTGAGTATCTTGGGAAGCACACTCATGATAGTTTTC
rJMSF026L13+ CAAAAAGGCTAAGTAATCTTGGCCTTGAGTATCTTGGGAAGCACACTCATGATAGTTTTC
                      ____________________________________________________________
consensus CAAAAAGGCTAAGTAATCTTGGCCTTGAGTATCTTGGGAAGCACACTCATGATAGTTTTC
 
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rJMSF039C19+ TCTTCAACCACTATGAGATTTGGTTTGAATTTAGGCGTTTCAAGGCTTAAGA-GGTGGAG
rJMSF043B04+ TCTTCAACCACTATGAGATTTGGTTTGAATTTAGGCGTTTCAAGGCTTAAGAGGGTGGAG
rJMSF026L13+ TCTTCAACCACTATGAGATTTGGTTTGAATTTAGGCGTTTCAAGGCTTAAGA-GGTGGAG
                      ____________________________________________________________
consensus TCTTCAACCACTATGAGATTTGGTTTGAATTTAGGCGTTTCAAGGCTTAAGA-GGTGGAG
 
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rJMSF039C19+ ATTGATAATTTGTATTTCCGAGGAAGCAATTGGAACTGTGTTCTCATTGTTCTTCTGATT
rJMSF043B04+ ATTGATAATTTGTATTTCCGAGGAAGCAATTGGAACTGTGTTCTCATTGTTCTTCTGATT
rJMSF026L13+ ATTGATAATTTGTATTTCCGAGGAAGCAATTGGAACTGTGTTCTCATTGTTCTTCTGATT
                      ____________________________________________________________
consensus ATTGATAATTTGTATTTCCGAGGAAGCAATTGGAACTGTGTTCTCATTGTTCTTCTGATT
 
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rJMSF039C19+ CATTCTTTCATTTATGAGGAAGTAATCTTGGCATTGAGTATCTCGGGAAGCACATTATGA
rJMSF043B04+ CATTCTTTCATTTATGAGGAAGTAATCTTGGCATTGAGTATCTCGGGAAGCACATTATGA
rJMSF026L13+ CATTCTTTCATTTATGAGGAAGTAATCTTGGCATTGAGTATCTCGGGAAGCACATTATGA
                      ____________________________________________________________
consensus CATTCTTTCATTTATGAGGAAGTAATCTTGGCATTGAGTATCTCGGGAAGCACATTATGA
 
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rJMSF039C19+ TAGTTTGCTCTTCAACCACTACGAGATTTGGTTTGAATTTAGGTGCTTCAAGGCTTAAAA
rJMSF043B04+ TAGTTTGCTCTTCAACCACTACGAGATTTGGTTTGAATTTAGGTGCTTCAAGGCTTAAAA
rJMSF026L13+ TAGTTTGCTCTTCAACCACTACGAGATTTGGTTTGAATTTAGGTGCTTCAAGGCTTAAAA
                      ____________________________________________________________
consensus TAGTTTGCTCTTCAACCACTACGAGATTTGGTTTGAATTTAGGTGCTTCAAGGCTTAAAA
 
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rJMSF039C19+ ATACATACATTCAGATGGAGATTGATAGTTCATATTTCTGAGGATGCAATTGATCAGCAC
rJMSF043B04+ ATACATACATTCAGATGGAGATTGATAGTTCATATTTCTGAGGATGCAATTGATCAGCAC
rJMSF026L13+ ATACATACATTCAGATGGAGATTGATAGTTCATATTTCTGAGGATGCAATTGATCAGCAC
                      ____________________________________________________________
consensus ATACATACATTCAGATGGAGATTGATAGTTCATATTTCTGAGGATGCAATTGATCAGCAC
 
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rJMSF039C19+ TCAGAACCATCTGCTCATCTTGTTCTTATTGTTCCCTTGATCCATTCTTTACCGGAAACA
rJMSF043B04+ TCAGAACCATCTGCTCATCTTGTTCTTATTGTTCCCTTGATCCATTCTTTACCGGAAACA
rJMSF026L13+ TCAGAACCATCTGCTCATCTTGTTCTTATTGTTCCCTTGATCCATTCTTTACCGGAAACA
                      ____________________________________________________________
consensus TCAGAACCATCTGCTCATCTTGTTCTTATTGTTCCCTTGATCCATTCTTTACCGGAAACA
 
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rJMSF039C19+ TGACACCTATGCACTGTTTCGCGATGTGCAAGAGAAATGACAGATTTTTGATAGAGGAGC
rJMSF043B04+ TGACACCTATGCACTGTTTCGCGATGTGCAAGAGAAATGACAGATTTTTGATAGAGGAGC
rJMSF026L13+ TGACACCTATGCACTGTTTCGCGATGTGCAAGAGAAATGACAGATTTTTGATAGAGGAGC
                      ____________________________________________________________
consensus TGACACCTATGCACTGTTTCGCGATGTGCAAGAGAAATGACAGATTTTTGATAGAGGAGC
 
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rJMSF039C19+ TTAGTGGTCATTAAGTTGTAGTTGAAGTGTAGGAGTCTGCTCTGAACTTACCATGGAGAA
rJMSF043B04+ TTAGTGGTCATTAAGTTGTAGTTGAAGTGTAGGAGTCTGCTCTGAACTTACCATGGAGAA
rJMSF026L13+ TTAGTGGTCATTAAGTTGTAGTTGAAGTGTAGGAGTCTGCTCTGAACTTACCATGGAGAA
                      ____________________________________________________________
consensus TTAGTGGTCATTAAGTTGTAGTTGAAGTGTAGGAGTCTGCTCTGAACTTACCATGGAGAA
 
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rJMSF039C19+ TGTTATTCACCATGTCATCACTGTATTGTAGTTATATATGCTAGGCAGTTAGACAGTTAT
rJMSF043B04+ TGTTATTCACCATGTCATCACTGTATTGTAGTTATATATGCTAGGCAGTTAGACAGTTAT
rJMSF026L13+ TGTTATTCACCATGTCATCACTGTATTGTAGTTATATATGCTAGGCAGTTAGACAGTTAT
                      ____________________________________________________________
consensus TGTTATTCACCATGTCATCACTGTATTGTAGTTATATATGCTAGGCAGTTAGACAGTTAT
 
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rJMSF039C19+ GTCATAAT-CACATTTTAG-CATGC--CCATATGTGTAACTTTCTGATG
rJMSF043B04+ GTCATAATCCACATTTTAGCCATGCCCCCATATGTGTAACTTTCTGATG
rJMSF026L13+ GTCATAAT-CACATTTTAG-CATGC--CCATATGTGTAACTTTCTGATGTATATTGAATT
                      ____________________________________________________________
consensus GTCATAAT-CACATTTTAG-CATGC--CCATATGTGTAACTTTCTGATGTATATTGAATT