| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF042C12 | Sequence | 648 | 003481 (46) | gb:AP005527_1853527 | 2e-17 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P060 | 594 | 012486 (3) | gb:AP004464_1841443 | 4e-15 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P066 |
| JMSF026K12 | Sequence | 663 | 006395 (2) | gb:AY714244_1624016 | 1e-61 | Pisum sativum MtN19-like protein mRNA, complete cds. | 674 | 012486 (3) | gb:AY714244_1624016 | 1e-26 | Pisum sativum MtN19-like protein mRNA, complete cds. |
| JMSF035F05 | Sequence | 628 | 006395 (2) | gb:AY714244_1624016 | 3e-54 | Pisum sativum MtN19-like protein mRNA, complete cds. | 773 | 012486 (3) | gb:AY714244_1624016 | 4e-47 | Pisum sativum MtN19-like protein mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
rJMSF035F05+ AACNGGGTACAATTCN
____________________________________________________________
consensus AACNGGGTACAATTCN
. : . : . : . : . : . :
rJMSF035F05+ ATGCACCACTGCAAGATTGAATACAGTGTGGAGCCTTGTTCCACTGCAGCAGCTAAGAGT
____________________________________________________________
consensus ATGCACCACTGCAAGATTGAATACAGTGTGGAGCCTTGTTCCACTGCAGCAGCTAAGAGT
. : . : . : . : . : . :
rJMSF035F05+ GGATGTGTTCATACTAAAAGATTAAGTGTGAGTTTTCCAAGTGGTGGGGATGTTATCTAT
____________________________________________________________
consensus GGATGTGTTCATACTAAAAGATTAAGTGTGAGTTTTCCAAGTGGTGGGGATGTTATCTAT
. : . : . : . : . : . :
rJMSF035F05+ GGTGTTGCACACCAGCACACAGGGGGTACTGGTTCTACTCTTTACGGGGAGGATGGACGG
rJMSF026K12+ GGGGAGGATGGACGG
____________________________________________________________
consensus GGTGTTGCACACCAGCACACAGGGGGTACTGGTTCTACTCTTTACGGGGAGGATGGACGG
. : . : . : . : . : . :
rJMSF035F05+ GCCATATGCTCATCGCTTCCAATCTATGGAGAAGGAATGGAACCGGGAAATGAATCTGGC
rJMFF042C12+ C
rJMSF026K12+ GCCATATGCTCATCGCTTCCAATCTATGGAGAAGGAATGGAACCGGGAAATGAATCTGGC
____________________________________________________________
consensus GCCATATGCTCATCGCTTCCAATCTATGGAGAAGGAATGGAACCGGGAAATGAATCTGGC
. : . : . : . : . : . :
rJMSF035F05+ TATATTGTAGGAATGACAACCTGCTATCCTCAACCTGGCACGGTCAAGATTGCTGACGGG
rJMFF042C12+ TATATTGTAGGAATGACAACCTGCTATCCTCAACCTGGCACGGTCAAGATTGCTGACGGG
rJMSF026K12+ TATATTGTAGGAATGACAACCTGCTATCCTCAACCTGGCACGGTCAAGATTGCNGACGGG
____________________________________________________________
consensus TATATTGTAGGAATGACAACCTGCTATCCTCAACCTGGCACGGTCAAGATTGCTGACGGG
. : . : . : . : . : . :
rJMSF035F05+ GAGTCTCTGACCATTGTGTCTAATTATAGCAGCCATCAAAGCCATACCGGAGTCATGGGG
rJMFF042C12+ GAGTCTCTGACCATTGTGTCTAATTATAGCAGCCATCAAAGCCATACCGGAGTCATGGGG
rJMSF026K12+ GAGTCTCTGACCATTGTGTCTAATTATAGCAGCCATCAAAGCCATACCGGAGTCATGGGG
____________________________________________________________
consensus GAGTCTCTGACCATTGTGTCTAATTATAGCAGCCATCAAAGCCATACCGGAGTCATGGGG
. : . : . : . : . : . :
rJMSF035F05+ CTTTTCTACATTTTAGTTGCTGATCCGGTACCAGAATCTCGTTCTTTCCTTCGTTCTCAA
rJMFF042C12+ CTTTTCTACATTTTAGTTGCTGATCCGGTACCAGAATCTCGTTCTTTCCTTCGTTCTCAA
rJMSF026K12+ CTTTTCTACATTTTAGTTGCTGATCCGGTACCAGAATCTCGTTCTTTCCTTCGTTCTCAA
____________________________________________________________
consensus CTTTTCTACATTTTAGTTGCTGATCCGGTACCAGAATCTCGTTCTTTCCTTCGTTCTCAA
. : . : . : . : . : . :
rJMSF035F05+ ATTAAGGGTGGTGAGATGATGATACTACCAAATGCTATTTTGATTTTAGCATTTGTTGGA
rJMFF042C12+ ATTAAGGGTGGTGAGATGATGATACTACCAAATGCTATTTTGATTTTAGCATTTGTTGGA
rJMSF026K12+ ATTAAGGGTGGTGAGATGATGATACTACCAAATGCTATTTTGATTTTAGCATTTGTTGGA
____________________________________________________________
consensus ATTAAGGGTGGTGAGATGATGATACTACCAAATGCTATTTTGATTTTAGCATTTGTTGGA
. : . : . : . : . : . :
rJMSF035F05+ ATTGCAGTGCTTGGTGTTGCTGTTATTATGAGTCGGCGTCGGGGTGAAAGGGAGAATGAT
rJMFF042C12+ ATTGCAGTGCTTGGTGTTGCTGTTATTATGAGTCGGCGTCGGGGTGAAAGGGAGAATGAT
rJMSF026K12+ ATTGCAGTGCTTGGTGTTGCTGTTATTATGAGTCGGCGTCGGGGTGAAAGGGAGAATGAT
____________________________________________________________
consensus ATTGCAGTGCTTGGTGTTGCTGTTATTATGAGTCGGCGTCGGGGTGAAAGGGAGAATGAT
. : . : . : . : . : . :
rJMSF035F05+ TATGAACCTATAGTGATGTGAGGGAGGCTTTGCCTTAGATTGAGAATTGATGCTTAATTA
rJMFF042C12+ TATGAACCTATAGTGATGTGAGGGAGGCTTTGCCTTAGATTGAGAATTGATGCTTAATTA
rJMSF026K12+ TATGAACCTATAGTGATGTGAGGGAGGCTTTGCCTTAGATTGAGAANTGATGCTTAATTA
____________________________________________________________
consensus TATGAACCTATAGTGATGTGAGGGAGGCTTTGCCTTAGATTGAGAATTGATGCTTAATTA
. : . : . : . : . : . :
rJMSF035F05+ AATCCAATCCAACATGTGATGTGTTTAGCACTTTGTTAATCACATGTAAGTTAGTTTTAT
rJMFF042C12+ AATCCAATCCAACATGTGATGTGTTTAGCACTTTGTTAATCACATGTAAGTTAGTTTTAT
rJMSF026K12+ AATCCAATCCAACATGTGATGTGTTTAGCACTTTGTTAATCACATGTAAGTTAGTTTTAT
____________________________________________________________
consensus AATCCAATCCAACATGTGATGTGTTTAGCACTTTGTTAATCACATGTAAGTTAGTTTTAT
. : . : . : . : . : . :
rJMSF035F05+ AATAAGGTGGATTGCAATGTCATATATTTTGTATTCTGTAAGTTGTATAAAGTTGTATGC
rJMFF042C12+ AATAAGGTGGATTGCAATGTCATATATTTTGTATTCTGTAAGTTGTAT-AAGTTGTATGC
rJMSF026K12+ AATAAGGTGGATTGCAATGTCATATATTTTGTATTCTGTAAGTNGTAT-AAGTTGTATGC
____________________________________________________________
consensus AATAAGGTGGATTGCAATGTCATATATTTTGTATTCTGTAAGTTGTAT-AAGTTGTATGC
. : . : . : . : . : . :
rJMSF035F05+ TTTCTTTTATATACCTCTCTAC
rJMFF042C12+ TTTCTTTTATATACCTCTCTACAAAGTACGAGATACAACTTTACAGAACACATAAAAAAA
rJMSF026K12+ TTTCTTTTATATACCTCTCTACAAAGTACGAGATACAACTTTACAGAACACATAAAAAAA
____________________________________________________________
consensus TTTCTTTTATATACCTCTCTACAAAGTACGAGATACAACTTTACAGAACACATAAAAAAA
. : . : . : . : . : . :
rJMFF042C12+ TTTCGGTAATTTCCTTAAAATGTACGGAGTAATGTATAAAGAGTTGTCTTTGAG
rJMSF026K12+ TTTCGGTAATTTCCTTAAAATGTACGGAGTAATGTATAAAGAGTNGTCTTTGAGAATTGC
____________________________________________________________
consensus TTTCGGTAATTTCCTTAAAATGTACGGAGTAATGTATAAAGAGTTGTCTTTGAGAATTGC