Previous Contig 012393:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF025C08Sequence674006274 (3)pir|T00440|T004407e-49hypothetical protein At2g47440 [imported] - Arabidopsis thaliana>gb:AC002535_153805012393 (2)pir|T00440|T004409e-58hypothetical protein At2g47440 [imported] - Arabidopsis thaliana>gb:AC002535_153
JMSF036K03Sequence681006274 (3)pir|T00440|T004401e-50hypothetical protein At2g47440 [imported] - Arabidopsis thaliana>gb:AC002535_153716012393 (2)pir|T00440|T004404e-47hypothetical protein At2g47440 [imported] - Arabidopsis thaliana>gb:AC002535_153

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF025C08+ GACCGGATATTGCCCGGACCGCTTG
                      ____________________________________________________________
consensus GACCGGATATTGCCCGGACCGCTTG
 
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rJMSF025C08+ GAAACGTCAGAATGTGCCGTACCGGGAAATCCCCGGAAAACTCTGTTCTTTGGCCACGAA
                      ____________________________________________________________
consensus GAAACGTCAGAATGTGCCGTACCGGGAAATCCCCGGAAAACTCTGTTCTTTGGCCACGAA
 
. : . : . : . : . : . :
rJMSF036K03+ ATTCAAGAACTAAAGCATAGGGTTGCTTCTGGCGAAACTGGAAACGTGGATTATTATGC
rJMSF025C08+ AATTCAAGAACTAAAGCATAGGGTTGCTTCTGGCGAAACTGGAAACGTGGATTATTATGC
                      ____________________________________________________________
consensus AATTCAAGAACTAAAGCATAGGGTTGCTTCTGGCGAAACTGGAAACGTGGATTATTATGC
 
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rJMSF036K03+ TTTAATGGGATTAAGGAGGGGTTGTTCAAAATCCGAATTGGAAAGATCCAATTTACTCCT
rJMSF025C08+ TTTAATGGGATTAAGGAGGGGTTGTTCAAAATCCGAATTGGAAAGATCCAATTTACTCCT
                      ____________________________________________________________
consensus TTTAATGGGATTAAGGAGGGGTTGTTCAAAATCCGAATTGGAAAGATCCAATTTACTCCT
 
. : . : . : . : . : . :
rJMSF036K03+ TAATATCAGACACAAACCTGATAAATCCATGAGCTTCGTGGAAAGATGCGAGTTTGAAGA
rJMSF025C08+ TAATATCAGACACAAACCTGATAAATCCATGAGCTTCGTGGAAAGATGCGAGTTTGAAGA
                      ____________________________________________________________
consensus TAATATCAGACACAAACCTGATAAATCCATGAGCTTCGTGGAAAGATGCGAGTTTGAAGA
 
. : . : . : . : . : . :
rJMSF036K03+ CGATCAAGACATTGATTCTGTGAGGGACAGAGCAAAGATGACTGCTCTATTATTGTACAG
rJMSF025C08+ CGATCAAGACATTGATTCTGTGAGGGACAGAGCAAAGATGACTGCTCTATTATTGTACAG
                      ____________________________________________________________
consensus CGATCAAGACATTGATTCTGTGAGGGACAGAGCAAAGATGACTGCTCTATTATTGTACAG
 
. : . : . : . : . : . :
rJMSF036K03+ ATTGATTCAAAGAGCTTATACTAGCTTAACAAAGACCATCATTGAAGAAGATGTAGCCGC
rJMSF025C08+ ATTGATTCAAAGAGCTTATACTAGCTTAACAAAGACCATCATTGAAGAAGATGTAGCCGC
                      ____________________________________________________________
consensus ATTGATTCAAAGAGCTTATACTAGCTTAACAAAGACCATCATTGAAGAAGATGTAGCCGC
 
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rJMSF036K03+ TGAGAAACAAAAGAAAAAGGCCGCCGCCGCAATGCAAGTAGAACCGGAGATGTCCGGGAA
rJMSF025C08+ TGAGAAACAAAAGAAAAAGGCCGCCGCCGCAATGCAAGTAGAACCGGAGATGTCCGGGAA
                      ____________________________________________________________
consensus TGAGAAACAAAAGAAAAAGGCCGCCGCCGCAATGCAAGTAGAACCGGAGATGTCCGGGAA
 
. : . : . : . : . : . :
rJMSF036K03+ CAGTACTATGATCGAGAACAAGGTTACAGCAGCCATCAAAGCATCACAACAATCGCCCGC
rJMSF025C08+ CAGTACTATGATCGAGAACAAGGTTACAGCAGCCATCAAAGCATCACAACAATCGCCCGC
                      ____________________________________________________________
consensus CAGTACTATGATCGAGAACAAGGTTACAGCAGCCATCAAAGCATCACAACAATCGCCCGC
 
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rJMSF036K03+ GTTTCAAGGAGTTTTCTGTCGTGACCTGGCCGTTGTCGGGAGCTTGCTATCTCAGGCCGG
rJMSF025C08+ GTTTCAAGGAGTTTTCTGTCGTGACCTGGCCGTTGTCGGGAGCTTGCTATCTCAGGCCGG
                      ____________________________________________________________
consensus GTTTCAAGGAGTTTTCTGTCGTGACCTGGCCGTTGTCGGGAGCTTGCTATCTCAGGCCGG
 
. : . : . : . : . : . :
rJMSF036K03+ GTTCAATCGCCCCATTCCTATGAAATACGAAGCATTGAGCTGCTGAATTCTGATCATCAA
rJMSF025C08+ GTTCAATCGCCCCATTCCTATGAAATACGAAGCATTGAGCTGCTGAATTCTGATCATCAA
                      ____________________________________________________________
consensus GTTCAATCGCCCCATTCCTATGAAATACGAAGCATTGAGCTGCTGAATTCTGATCATCAA
 
. : . : . : . : . : . :
rJMSF036K03+ TGGCGCCCAACAACCAGATCTCAACAAAACCGGCTGGACCAAAATGATTCAATCATTATT
rJMSF025C08+ TGGCGCCCAACAACCAGATCTCAACAAAACCGGCCGGACCAAAATGATTCAATCATTATT
                      ____________________________________________________________
consensus TGGCGCCCAACAACCAGATCTCAACAAAACCGGCTGGACCAAAATGATTCAATCATTATT
 
. : . : . : . : . : . :
rJMSF036K03+ ACAATTAATAATAATAATAATATTATTAAACAAAAAAGTGGTCTGATCTTTTTGTACAAA
rJMSF025C08+ ACAATTAATAATAATAATAATATTATTAAACAAAAAAGTGGTCTGATCTTTTTGTACAAA
                      ____________________________________________________________
consensus ACAATTAATAATAATAATAATATTATTAAACAAAAAAGTGGTCTGATCTTTTTGTACAAA
 
. : . : . : . : . : . :
rJMSF036K03+ ATGGTAAGAAAATAATCAAATATGTAGCTAGCTTATTAGCGGCCAAGAAAATTT
rJMSF025C08+ ATGGTAAGAAAATAATCAAATATGTAGCTAGCTTATTAGCGGCCAAGAAAATTTTGTACT
                      ____________________________________________________________
consensus ATGGTAAGAAAATAATCAAATATGTAGCTAGCTTATTAGCGGCCAAGAAAATTTTGTACT