Previous Contig 012378:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017E20Sequence624012378 (2)gb:AY085709_15707762e-67Arabidopsis thaliana clone 17230 mRNA, complete sequence.
JMSF024M09Sequence647006244 (2)pir|T02368|T023681e-56hypothetical protein T8F5.23 - Arabidopsis thaliana>gb:AE005173_894198 Arabidops690012378 (2)gb:AY085709_15707762e-69Arabidopsis thaliana clone 17230 mRNA, complete sequence.

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024M09- TATTGCATCCACACACATATATATATTTCA
                      ____________________________________________________________
consensus TATTGCATCCACACACATATATATATTTCA
 
. : . : . : . : . : . :
JMFN017E20+ ATTCAAGAAAGATGATTGAGGATTAATATGNCGATGATACGATGAAGAC
rJMSF024M09- CAGCTTCAAATATTCAAGAAAGATGATTGAGGATTAATATGACGATGATACGATGAAGAC
                      ____________________________________________________________
consensus CAGCTTCAAATATTCAAGAAAGATGATTGAGGATTAATATGACGATGATACGATGAAGAC
 
. : . : . : . : . : . :
JMFN017E20+ GAAGATCAAGCCAAGAATNTGTGGAATAGTGATTTGAATTTCTCCATCTCTTTAGGGGGC
rJMSF024M09- GAAGATCAAGCCAAGAATTTGTGGAATAGTGATTTGAATTTCTCCATCTCTTTAGGGGGC
                      ____________________________________________________________
consensus GAAGATCAAGCCAAGAATTTGTGGAATAGTGATTTGAATTTCTCCATCTCTTTAGGGGGC
 
. : . : . : . : . : . :
JMFN017E20+ AGAGCGACCAACACATTCACTCCGCTGTTGCTTTTTCCGCCATTATCGATGTCAGGAAAC
rJMSF024M09- AGAGCGACCAACACATTCACTCCGCTGTTGCTTTTTCCGCCATTATCGATGTCAGGAAAC
                      ____________________________________________________________
consensus AGAGCGACCAACACATTCACTCCGCTGTTGCTTTTTCCGCCATTATCGATGTCAGGAAAC
 
. : . : . : . : . : . :
JMFN017E20+ AGCAGGATTATGTCCTTCCGATGATAAACCACAGGGCAACTGTACTTAGGTTTTCCCCAT
rJMSF024M09- AGCAGGATTATGTCCTTCCGATGATAAACCACAGGGCAACTGTACTTAGGTTTTCCCCAT
                      ____________________________________________________________
consensus AGCAGGATTATGTCCTTCCGATGATAAACCACAGGGCAACTGTACTTAGGTTTTCCCCAT
 
. : . : . : . : . : . :
JMFN017E20+ GGAAACTGCACTCCTTCAAACCCTAATCTCCACCACGACGACACCAGGAACTCGCCGTGA
rJMSF024M09- GGAAACTGCACTCCTTCAAACCCTAATCTCCACCACGACGACACCAGGAACTCGCCGTGA
                      ____________________________________________________________
consensus GGAAACTGCACTCCTTCAAACCCTAATCTCCACCACGACGACACCAGGAACTCGCCGTGA
 
. : . : . : . : . : . :
JMFN017E20+ GGGAACCCTTTGTAAAGCTCTCCCCAGTCGATCGCCGACCGGGCGTACTCGTCGGTCATC
rJMSF024M09- GGGAACCCTTTGTAAAGCTCTCCCCAGTCGATCGCCGACCGGGCGTACTCGTCGGTCATC
                      ____________________________________________________________
consensus GGGAACCCTTTGTAAAGCTCTCCCCAGTCGATCGCCGACCGGGCGTACTCGTCGGTCATC
 
. : . : . : . : . : . :
JMFN017E20+ CTCGCCGCCCCCTCGTAAACCATCTGCACCGTCTTCCAGAACGGGCCTTCTTCCAGCTCC
rJMSF024M09- CTCGCCGCCCCCTCGTAAACCATCTGCACCGTCTTCCAGAACGGGCCTTCTTCCAGCTCC
                      ____________________________________________________________
consensus CTCGCCGCCCCCTCGTAAACCATCTGCACCGTCTTCCAGAACGGGCCTTCTTCCAGCTCC
 
. : . : . : . : . : . :
JMFN017E20+ GCGCACTTCGCGGAACCGTATCCGGTGAGCACGGCGTTGCCGGAGTAGGAATCCGGCAGC
rJMSF024M09- GCGCACTTCGCGGAACCGTATCCGGTGAGCACGGCGTTGCCGGAGTAGGAATCCGGCAGC
                      ____________________________________________________________
consensus GCGCACTTCGCGGAACCGTATCCGGTGAGCACGGCGTTGCCGGAGTAGGAATCCGGCAGC
 
. : . : . : . : . : . :
JMFN017E20+ GGCGGGTTCAGCCGCCGGCGGATGTCCACCGCGAAGAGCACGGTGGAGAGGCGATCGGAG
rJMSF024M09- GGCGGGTTCAGCCGCCGGCGGATGTCCACCGCGAAGAGCACGGTGGAGAGGCGATCGGAG
                      ____________________________________________________________
consensus GGCGGGTTCAGCCGCCGGCGGATGTCCACCGCGAAGAGCACGGTGGAGAGGCGATCGGAG
 
. : . : . : . : . : . :
JMFN017E20+ TTGTTCTCCCCGCCGAGGCACGACAGCGCCTTGCACCTCCATATGGCGGCGGTCAAAACG
rJMSF024M09- TTGTTCTCCCCGCCGAGGCACGACAGCGCCTTGCACCTCCATATGGCGGCGGTCAAAACG
                      ____________________________________________________________
consensus TTGTTCTCCCCGCCGAGGCACGACAGCGCCTTGCACCTCCATATGGCGGCGGTCAAAACG
 
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JMFN017E20+ TTGAAACCTGTGACCTTGGTTTTGACGTTGTCGGG
rJMSF024M09- TTGAAACCTGTGACCTTGGTTTTGACGTTGTCGGGCGCCTTGGCCTTGTCCTTCAGCCTC
                      ____________________________________________________________
consensus TTGAAACCTGTGACCTTGGTTTTGACGTTGTCGGGCGCCTTGGCCTTGTCCTTCAGCCTC