Previous Contig 012329:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041H05Sequence647005126 (3)gb:AP003714_18323671e-73Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P065600012329 (3)gb:AF097668_17678946e-72Mesembryanthemum crystallinum T-complex protein 1 epsilon subunit (TCP-1-EPSILON
JMSF010B02Sequence286005126 (3)gb:AP003714_18323673e-09Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P065736012329 (3)gb:AF097668_1767894e-103Mesembryanthemum crystallinum T-complex protein 1 epsilon subunit (TCP-1-EPSILON
JMSF023O13Sequence696005126 (3)gb:AP003714_18323677e-82Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P065741012329 (3)gb:AF097668_1767894e-101Mesembryanthemum crystallinum T-complex protein 1 epsilon subunit (TCP-1-EPSILON

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF010B02+ GGAGCTGATTGCAATAGCCACAGGTGGGAGAA
rJMSF023O13+ CAATAGCCACAGGTGGGAGAA
                      ____________________________________________________________
consensus GGAGCTGATTGCAATAGCCACAGGTGGGAGAA
 
. : . : . : . : . : . :
rJMSF010B02+ TTGTGCCAAGGTTTCAGGAGTTGTCACCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAG
rJMSF023O13+ TTGTGCCAAGGTTTCAGGAGTTGTCACCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAG
                      ____________________________________________________________
consensus TTGTGCCAAGGTTTCAGGAGTTGTCACCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAG
 
. : . : . : . : . : . :
rJMSF010B02+ AAAAATCCTTTGGTACAACAAAGGATAGAATGATCTATATTGAACAGTGTGCCAATTCAA
rJMSF023O13+ AAAAATCCTTTGGTACAACAAAGGATAGAATGATCTATATTGAACAGTGTGCCAATTCAA
                      ____________________________________________________________
consensus AAAAATCCTTTGGTACAACAAAGGATAGAATGATCTATATTGAACAGTGTGCCAATTCAA
 
. : . : . : . : . : . :
rJMSF010B02+ GAGCTGTGACCATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAACGGA
rJMFF041H05+ GGTAACAAAATGATGATAGAGGAGACAAAACGGA
rJMSF023O13+ GAGCTGTGACCATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAACGGA
                      ____________________________________________________________
consensus GAGCTGTGACCATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAACGGA
 
. : . : . : . : . : . :
rJMSF010B02+ GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
rJMFF041H05+ GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
rJMSF023O13+ GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
                      ____________________________________________________________
consensus GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
 
. : . : . : . : . : . :
rJMSF010B02+ GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
rJMFF041H05+ GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
rJMSF023O13+ GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
                      ____________________________________________________________
consensus GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
 
. : . : . : . : . : . :
rJMSF010B02+ GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
rJMFF041H05+ GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
rJMSF023O13+ GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
                      ____________________________________________________________
consensus GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
 
. : . : . : . : . : . :
rJMSF010B02+ CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
rJMFF041H05+ CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
rJMSF023O13+ CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
                      ____________________________________________________________
consensus CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
 
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rJMSF010B02+ AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
rJMFF041H05+ AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
rJMSF023O13+ AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
                      ____________________________________________________________
consensus AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
 
. : . : . : . : . : . :
rJMSF010B02+ TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
rJMFF041H05+ TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
rJMSF023O13+ TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
                      ____________________________________________________________
consensus TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
 
. : . : . : . : . : . :
rJMSF010B02+ CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCAC
rJMFF041H05+ CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCAC
rJMSF023O13+ CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCACTCCGGCTGTTTACTGAT
                      ____________________________________________________________
consensus CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCACTCCGGCTGTTTACTGAT
 
. : . : . : . : . : . :
rJMSF023O13+ GAGTTGAGCTTTACCTAGAACTAGAATTATTTTAGTTTCTACTTCAAATTTCCGATGCTA
                      ____________________________________________________________
consensus GAGTTGAGCTTTACCTAGAACTAGAATTATTTTAGTTTCTACTTCAAATTTCCGATGCTA
 
. : . : . : . : . : . :
rJMSF023O13+ TTGAGTGGAAACTCTCTCTTATGTGTATGCATTGGATTCTTTATGAATCCAATCACATTC
                      ____________________________________________________________
consensus TTGAGTGGAAACTCTCTCTTATGTGTATGCATTGGATTCTTTATGAATCCAATCACATTC