| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041H05 | Sequence | 647 | 005126 (3) | gb:AP003714_1832367 | 1e-73 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P065 | 600 | 012329 (3) | gb:AF097668_1767894 | 6e-72 | Mesembryanthemum crystallinum T-complex protein 1 epsilon subunit (TCP-1-EPSILON |
| JMSF010B02 | Sequence | 286 | 005126 (3) | gb:AP003714_1832367 | 3e-09 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P065 | 736 | 012329 (3) | gb:AF097668_1767894 | e-103 | Mesembryanthemum crystallinum T-complex protein 1 epsilon subunit (TCP-1-EPSILON |
| JMSF023O13 | Sequence | 696 | 005126 (3) | gb:AP003714_1832367 | 7e-82 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P065 | 741 | 012329 (3) | gb:AF097668_1767894 | e-101 | Mesembryanthemum crystallinum T-complex protein 1 epsilon subunit (TCP-1-EPSILON |
This contig is upended
. : . : . : . : . : . :
rJMSF010B02+ GGAGCTGATTGCAATAGCCACAGGTGGGAGAA
rJMSF023O13+ CAATAGCCACAGGTGGGAGAA
____________________________________________________________
consensus GGAGCTGATTGCAATAGCCACAGGTGGGAGAA
. : . : . : . : . : . :
rJMSF010B02+ TTGTGCCAAGGTTTCAGGAGTTGTCACCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAG
rJMSF023O13+ TTGTGCCAAGGTTTCAGGAGTTGTCACCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAG
____________________________________________________________
consensus TTGTGCCAAGGTTTCAGGAGTTGTCACCAGAAAAGCTTGGCAGGGCTGGGCTGGTTCAAG
. : . : . : . : . : . :
rJMSF010B02+ AAAAATCCTTTGGTACAACAAAGGATAGAATGATCTATATTGAACAGTGTGCCAATTCAA
rJMSF023O13+ AAAAATCCTTTGGTACAACAAAGGATAGAATGATCTATATTGAACAGTGTGCCAATTCAA
____________________________________________________________
consensus AAAAATCCTTTGGTACAACAAAGGATAGAATGATCTATATTGAACAGTGTGCCAATTCAA
. : . : . : . : . : . :
rJMSF010B02+ GAGCTGTGACCATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAACGGA
rJMFF041H05+ GGTAACAAAATGATGATAGAGGAGACAAAACGGA
rJMSF023O13+ GAGCTGTGACCATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAACGGA
____________________________________________________________
consensus GAGCTGTGACCATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAACGGA
. : . : . : . : . : . :
rJMSF010B02+ GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
rJMFF041H05+ GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
rJMSF023O13+ GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
____________________________________________________________
consensus GCCTTCATGATGCTTTATGTGTGGCTAGAAATCTTATTCGCAACAATTCTATAGTGTATG
. : . : . : . : . : . :
rJMSF010B02+ GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
rJMFF041H05+ GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
rJMSF023O13+ GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
____________________________________________________________
consensus GTGGTGGATCTGCTGAGATCTCTTGCTCAATTGCTGTGGAAGCAGCTTCTGATAATTATC
. : . : . : . : . : . :
rJMSF010B02+ GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
rJMFF041H05+ GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
rJMSF023O13+ GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
____________________________________________________________
consensus GAGGGGTTGAGCAGTATGCAATCAGGGCATTTGCAGATGCCTTAGATTCTATCCCCATGG
. : . : . : . : . : . :
rJMSF010B02+ CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
rJMFF041H05+ CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
rJMSF023O13+ CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
____________________________________________________________
consensus CACTCGCTGAGAATAGTGGCCTTCCACCAATTGAGACGCTATCTGCAGTTAAATCTCAGC
. : . : . : . : . : . :
rJMSF010B02+ AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
rJMFF041H05+ AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
rJMSF023O13+ AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
____________________________________________________________
consensus AAATAAAGGAGAATAACCCGTGCTGTGGGATTGATTGTAATGATGTTGGCACGAATAATA
. : . : . : . : . : . :
rJMSF010B02+ TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
rJMFF041H05+ TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
rJMSF023O13+ TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
____________________________________________________________
consensus TGAGTGAGCAAAATGTGTTTGAGACTTTGATTGGGAAGCAACAGCAGATTTTGCTTGCAA
. : . : . : . : . : . :
rJMSF010B02+ CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCAC
rJMFF041H05+ CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCAC
rJMSF023O13+ CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCACTCCGGCTGTTTACTGAT
____________________________________________________________
consensus CTCAGGTTGTGAAATTGATTCTAAAGATTGATGATGTCATCACTCCGGCTGTTTACTGAT
. : . : . : . : . : . :
rJMSF023O13+ GAGTTGAGCTTTACCTAGAACTAGAATTATTTTAGTTTCTACTTCAAATTTCCGATGCTA
____________________________________________________________
consensus GAGTTGAGCTTTACCTAGAACTAGAATTATTTTAGTTTCTACTTCAAATTTCCGATGCTA
. : . : . : . : . : . :
rJMSF023O13+ TTGAGTGGAAACTCTCTCTTATGTGTATGCATTGGATTCTTTATGAATCCAATCACATTC
____________________________________________________________
consensus TTGAGTGGAAACTCTCTCTTATGTGTATGCATTGGATTCTTTATGAATCCAATCACATTC