clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF023I05 | Sequence | 622 | 012312 (2) | gb:AY074586_1567624 | 2e-41 | Arabidopsis thaliana AT3g53630/F4P12_330 mRNA, complete cds.>gb:AY097380_1576375 | 764 | 012312 (2) | gb:AY074586_1567624 | 1e-40 | Arabidopsis thaliana AT3g53630/F4P12_330 mRNA, complete cds.>gb:AY097380_1576375 |
This contig is upended
. : . : . : . : . : . :
JMSF023I05- GAGTCTCAAGTCCCAATTTCCT
____________________________________________________________
consensus GAGTCTCAAGTCCCAATTTCCT
. : . : . : . : . : . :
JMSF023I05- CTTTTTATTCTGGAAGCCCCAAAACCCCAAACCTCCTAAACCCCTGCAATCCCACCATCG
____________________________________________________________
consensus CTTTTTATTCTGGAAGCCCCAAAACCCCAAACCTCCTAAACCCCTGCAATCCCACCATCG
. : . : . : . : . : . :
JMSF023I05- CTGTGGCCGACCGCCGACCGCCGACCGCCGACCGCCGACCGCCACCATGAATTCATCGTT
____________________________________________________________
consensus CTGTGGCCGACCGCCGACCGCCGACCGCCGACCGCCGACCGCCACCATGAATTCATCGTT
. : . : . : . : . : . :
JMSF023I05- CAACACCACTCCTAATTTCGACAACCTCCTCCTCCAATCCCTAATGGGCAGACTCCAAAT
____________________________________________________________
consensus CAACACCACTCCTAATTTCGACAACCTCCTCCTCCAATCCCTAATGGGCAGACTCCAAAT
. : . : . : . : . : . :
JMSF023I05- CCGCCCTTCACCGCCTCCAAACCCTGCTTTGCTCTCCGCCAAATCCCTCGAAGACCTCCT
____________________________________________________________
consensus CCGCCCTTCACCGCCTCCAAACCCTGCTTTGCTCTCCGCCAAATCCCTCGAAGACCTCCT
. : . : . : . : . : . :
JMSF023I05- CCTCAACAACCTCCTCTCCGACCAAACAGACGACCCGGATGATGACGACGACGACGACGT
rJMSF023I05+ TCCGACCAAACAGACGACCCGGATGATGACGACGACGACGACGT
____________________________________________________________
consensus CCTCAACAACCTCCTCTCCGACCAAACAGACGACCCGGATGATGACGACGACGACGACGT
. : . : . : . : . : . :
JMSF023I05- CGAACCCTCCTACAAATCCCAGCTCGCCAAAGAAGAATCCAAGCTCGAGAAGGAGATCAT
rJMSF023I05+ CGAACCCTCCTACAAATCCCAGCTCGCCAAAGAAGAATCCAAGCTCGAGAAGGAGATCAT
____________________________________________________________
consensus CGAACCCTCCTACAAATCCCAGCTCGCCAAAGAAGAATCCAAGCTCGAGAAGGAGATCAT
. : . : . : . : . : . :
JMSF023I05- CCGCACAATCCACAGCGGCAACACCGACTCTCTCAAGCCCAATTCCGGCCAGGCCGTCAC
rJMSF023I05+ CCGCACAATCCACAGCGGCAACACCGACTCTCTCAAGCCCAATTCCGGCCAGGCCGTCAC
____________________________________________________________
consensus CCGCACAATCCACAGCGGCAACACCGACTCTCTCAAGCCCAATTCCGGCCAGGCCGTCAC
. : . : . : . : . : . :
JMSF023I05- AATCGGCGAGCATCACATATGCGTAGGGTTTCACGAGGACGAGGACTCGGATTATCGGGT
rJMSF023I05+ AATCGGCGAGCATCACATATGCGTAGGGTTTCACGAGGACGAGGACTCGGATTATCGGGT
____________________________________________________________
consensus AATCGGCGAGCATCACATATGCGTAGGGTTTCACGAGGACGAGGACTCGGATTATCGGGT
. : . : . : . : . : . :
JMSF023I05- CTGGGAGTGGCACGGCCATATCATTCTGTTTGACGATGAAAACGGGTACAATCCTGAGTA
rJMSF023I05+ CTGGGAGTGGCACGGCCATATCATTCTGTTTGACGATGAAAACGGGTACAATCCTGAGTA
____________________________________________________________
consensus CTGGGAGTGGCACGGCCATATCATTCTGTTTGACGATGAAAACGGGTACAATCCTGAGTA
. : . : . : . : . : . :
JMSF023I05- CATATATGGGAATTATTTTGAGAGACTCACTGCTAAGCCGGCAATGAAGAAGAAGCAGAG
rJMSF023I05+ CATATATGGGAATTATTTTGAGAGACTCACTGCTAAGCCGGCAATGAAGAAGAAGCAGAG
____________________________________________________________
consensus CATATATGGGAATTATTTTGAGAGACTCACTGCTAAGCCGGCAATGAAGAAGAAGCAGAG
. : . : . : . : . : . :
rJMSF023I05+ TGAAGAGAAGGAGGTGGAGAAGGTCGGGAATATGGGCTTGAAGGAGTTGATAGAGTCGGC
____________________________________________________________
consensus TGAAGAGAAGGAGGTGGAGAAGGTCGGGAATATGGGCTTGAAGGAGTTGATAGAGTCGGC
. : . : . : . : . : . :
rJMSF023I05+ AGAGTCTAATTCTGAGGCTCGGATTCTTAGGAGGAATATCAATGCCGGATCTTCAAATTT
____________________________________________________________
consensus AGAGTCTAATTCTGAGGCTCGGATTCTTAGGAGGAATATCAATGCCGGATCTTCAAATTT
. : . : . : . : . : . :
rJMSF023I05+ TAAATCAGGTTCTAGTTGAGAAGTTTGCCAAGTGCTCAGCAAGCGTTCTTGCTCTAAGCT
____________________________________________________________
consensus TAAATCAGGTTCTAGTTGAGAAGTTTGCCAAGTGCTCAGCAAGCGTTCTTGCTCTAAGCT
. : . : . : . : . : . :
rJMSF023I05+ CACATTGAGGTTGCTCTTTTCCCCTCAGCTGCATGGTGAAGCGCCTTTTTGTTCAAATGG
____________________________________________________________
consensus CACATTGAGGTTGCTCTTTTCCCCTCAGCTGCATGGTGAAGCGCCTTTTTGTTCAAATGG
. : . : . : . : . : . :
rJMSF023I05+ CATTTTCCATAATTTCTAATTGAATGGTAAGCAGAGTATTGGGTTGTTGTCATGGGCAGC
____________________________________________________________
consensus CATTTTCCATAATTTCTAATTGAATGGTAAGCAGAGTATTGGGTTGTTGTCATGGGCAGC
. : . : . : . : . : . :
rJMSF023I05+ TGAAACTGCACTTTAGCAGGTGTTCTGTACAACTTGAAGCCAATGCTATGAACTTTCAAT
____________________________________________________________
consensus TGAAACTGCACTTTAGCAGGTGTTCTGTACAACTTGAAGCCAATGCTATGAACTTTCAAT
. : . : . : . : . : . :
rJMSF023I05+ AAAGGTGTTATTTGATACAAACAATGTTACATGTCCAGGTGGTTTTATGCACATGTCATC
____________________________________________________________
consensus AAAGGTGTTATTTGATACAAACAATGTTACATGTCCAGGTGGTTTTATGCACATGTCATC