| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF023E13 | Sequence | 294 | 006136 (2) | 767 | 012295 (2) | gb:AY136303_1581804 | 1e-54 | Arabidopsis thaliana vacuolar sorting receptor-like protein (At4g20110) mRNA, co | |||
| JMSF044E09 | Sequence | 798 | 006136 (2) | pir|G86434|G86434 | 2e-82 | protein F17F8.23 [imported] - Arabidopsis thaliana>gb:AE005172_891945 Arabidopsi | 839 | 012295 (2) | gb:AP003628_1831708 | 5e-81 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P047 |
This contig is upended
. : . : . : . : . : . :
rJMSF044E09+ AATGGCG
____________________________________________________________
consensus AATGGCG
. : . : . : . : . : . :
rJMSF044E09+ GGTGCTGGCATGATCCAAAATCTAACGTAACAGCCTGCAAGGACACATTTAGGGGAAGAG
____________________________________________________________
consensus GGTGCTGGCATGATCCAAAATCTAACGTAACAGCCTGCAAGGACACATTTAGGGGAAGAG
. : . : . : . : . : . :
rJMSF044E09+ TATGCGAGTGCCCATCGATGAATGGTGTTCAGTACAAA-GGAGACGGATATACATCATGT
rJMSF023E13+ CATCGATGAATGGTGTTCAGTACAAAGGGAGACGGATATACATCATGT
____________________________________________________________
consensus TATGCGAGTGCCCATCGATGAATGGTGTTCAGTACAAAGGGAGACGGATATACATCATGT
. : . : . : . : . : . :
rJMSF044E09+ GAAGCTGTTGGACCTGGAAGGTGCACGGTAAATAATGGCGGTTGCTGGTCAGAGACAAAA
rJMSF023E13+ GAAGCTGTTGGACCTGGAAGGTGCACGGTAAATAATGGCGG-TGCTGGTCAGAGACAAAA
____________________________________________________________
consensus GAAGCTGTTGGACCTGGAAGGTGCACGGTAAATAATGGCGGTTGCTGGTCAGAGACAAAA
. : . : . : . : . : . :
rJMSF044E09+ GACAGAACAACTTTTTCTGCTTGCTCAGAAGCTCTTATTACCGGCTGTAAATGTCCCTAT
rJMSF023E13+ GACAGAACAACTTTTTCTGCTTGCTCAGAAGCTCTTATTACCGGCTGTAAATGTCCCTAT
____________________________________________________________
consensus GACAGAACAACTTTTTCTGCTTGCTCAGAAGCTCTTATTACCGGCTGTAAATGTCCCTAT
. : . : . : . : . : . :
rJMSF044E09+ GGCTTTAAAGGGGATGGCCATAAATGTGAAGATGTAGACGAATGTAAGGAAGGCACGGTT
rJMSF023E13+ GGCTTTAAAGGGGATGGCCATAAATGTGAAGATGTAGACGAATGTAAGGAAGGCACGGTT
____________________________________________________________
consensus GGCTTTAAAGGGGATGGCCATAAATGTGAAGATGTAGACGAATGTAAGGAAGGCACGGTT
. : . : . : . : . : . :
rJMSF044E09+ TGTCAGTGTGATGGTTGCAAGTGTAAGAACACATGGGGTGGATATGACTGCAAATGTAAA
rJMSF023E13+ TGTCAGTGTGATGGTTGCAAGTGTAAGAACACATGGGGTGGATATGACTGCAAATGTAAA
____________________________________________________________
consensus TGTCAGTGTGATGGTTGCAAGTGTAAGAACACATGGGGTGGATATGACTGCAAATGTAAA
. : . : . : . : . : . :
rJMSF044E09+ GGAGATAAATTGTATATAATGGAGCATGACACATGCATTGAAAGACAGTCATCAAAACTT
rJMSF023E13+ GGAGATAAATTGTATATAATGGAGCATGACACATGCATTGAAAGACAGTCATCAAAACTT
____________________________________________________________
consensus GGAGATAAATTGTATATAATGGAGCATGACACATGCATTGAAAGACAGTCATCAAAACTT
. : . : . : . : . : . :
rJMSF044E09+ GGAGGCTTCCTAACTTTTGCGGTTATAGCTGTTGTACTTGGTGCTGGAATAGCTGGATAC
rJMSF023E13+ GGAGGCTTCCTAACTTTTGCGGTTATAGCTGTTGTACTTGGTGCTGGAATAGCTGGATAC
____________________________________________________________
consensus GGAGGCTTCCTAACTTTTGCGGTTATAGCTGTTGTACTTGGTGCTGGAATAGCTGGATAC
. : . : . : . : . : . :
rJMSF044E09+ ATATTCTACAAATACAGACTTAGGTCATACATGGACACAGAGATTATGGCTATCATGTCG
rJMSF023E13+ ATATTCTACAAATACAGACTTAGGTCATACATGGACACAGAGATTATGGCTATCATGTCG
____________________________________________________________
consensus ATATTCTACAAATACAGACTTAGGTCATACATGGACACAGAGATTATGGCTATCATGTCG
. : . : . : . : . : . :
rJMSF044E09+ CAGTACATGCCTCTCGACAATAACCATCAGAATCAGGTTGTTCAACACGAAACTGAACCT
rJMSF023E13+ CAGTACATGCCTCTCGACAATAACCATCAGAATCAGGTTGTTCAACACGAAACTGAACCT
____________________________________________________________
consensus CAGTACATGCCTCTCGACAATAACCATCAGAATCAGGTTGTTCAACACGAAACTGAACCT
. : . : . : . : . : . :
rJMSF044E09+ TTACGAGACGCCTCATCTGTATGAAGAAGCGTCTTGGTTGATTTGTTGACTATACAGAAT
rJMSF023E13+ TTACGAGACGCCTCATCTGTATGAAGAAGCGTCTTGGTTGATTTGTTGACTATACAGAAT
____________________________________________________________
consensus TTACGAGACGCCTCATCTGTATGAAGAAGCGTCTTGGTTGATTTGTTGACTATACAGAAT
. : . : . : . : . : . :
rJMSF044E09+ GCATCAGTGATGCCGGTGAGACTCAACTTAACAGCTACACATTCGAGACAAGTCATATGG
rJMSF023E13+ GCATCAGTGATGCCGGTGAGACTCAACTTAACAGCTACACATTCGAGACAAGTCATATGG
____________________________________________________________
consensus GCATCAGTGATGCCGGTGAGACTCAACTTAACAGCTACACATTCGAGACAAGTCATATGG
. : . : . : . : . : . :
rJMSF044E09+ TACGGTGTTTTATAGTCTCTACATCTAAATTCTGTCTGGTTCCACTCAATTACTTGAGGA
rJMSF023E13+ TACGGTGTTTTATAGTCTCTACATCTAAATTCTGTCTGGTTCCACTCAATTACTTGAGGN
____________________________________________________________
consensus TACGGTGTTTTATAGTCTCTACATCTAAATTCTGTCTGGTTCCACTCAATTACTTGAGGA
. : . : . : . : . : . :
rJMSF044E09+ TATAGATTATATCAATAACCGAGCTCGCTGCGTTTGTGTATAAAATGGATCTA
rJMSF023E13+ TATCGATNATATCAATAACCGAGCTCGCTGCGTTTGTGCATAAAATGGATCTACAGAGTA
____________________________________________________________
consensus TATCGATTATATCAATAACCGAGCTCGCTGCGTTTGTGTATAAAATGGATCTACAGAGTA