Previous Contig 012242:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F04Sequence385004407 (3)260012242 (3)gb:AF309490_17849930.002Coccidioides immitis spherule outer wall glycoprotein (SOWgp66) mRNA, complete c
JMSF022D22Sequence658004407 (3)332012242 (3)pir|T32711|T327110.038hypothetical protein T22D1.2 - Caenorhabditis elegans>gb:AF039052_1235428 Caenor
JMSF047M12Sequence663004407 (3)323012242 (3)pir|T32711|T327110.007hypothetical protein T22D1.2 - Caenorhabditis elegans>gb:AF039052_1235428 Caenor

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF002F04+ TTTTTTGGGGGGGGGGGGGGGTGTTCCTCT
rJMSF047M12+ AAATTTTTTGGGGGGGGGGGGGGGGTGTTCCTCT
rJMSF022D22+ TTTTTNGGGGGGGGGGGGGGGTGTTCCTCT
                      ____________________________________________________________
consensus AAATTTTTTTGGGGGGGGGGGGGGGTGTTCCTCT
 
. : . : . : . : . : . :
rJMSF002F04+ CTTTAATGACCACCATCAATAAGGACCTAGGACTGGACTAAGGGTTGGCCCTGGCCTGAT
rJMSF047M12+ CTTTAATGACCACCATCAATAAGGACCTAGGACTGGACTAAGGGTTGGCCCTGGCCTGAT
rJMSF022D22+ CTTTAATGACCACCATCAATAAGGACCTAGGACTGGACTAAGGGTTGGCCCTGGCCTGAT
                      ____________________________________________________________
consensus CTTTAATGACCACCATCAATAAGGACCTAGGACTGGACTAAGGGTTGGCCCTGGCCTGAT
 
. : . : . : . : . : . :
rJMSF002F04+ GTTGCCACATCAATGGTGGGGGAAGATCATGATAATGCAAAATTTGAATAAGACATAAGC
rJMSF047M12+ GTTGCCACATCAATGGTGGGGGAAGATCATGATAATGCAAAATTTGAATAAGACATAAGC
rJMSF022D22+ GTTGCCACATCAATGGTGGGGGAAGATCATGATAATGCAAAATTTGAATAAGACATAAGC
                      ____________________________________________________________
consensus GTTGCCACATCAATGGTGGGGGAAGATCATGATAATGCAAAATTTGAATAAGACATAAGC
 
. : . : . : . : . : . :
rJMSF002F04+ AGCAGTCTTGGATGCTCTTGTTGGCCCACCCGCATCCGGTATCATCACCACTGTGGGACT
rJMSF047M12+ AGCAGTCTTGGATGCTCTTGTTGGCCCACCCGCATCCGGTATCATCACCACTGTGGGACT
rJMSF022D22+ AGCAGTCTTGGATGCTCTTGTTGGCCCACCCGCATCCGGTATCATCACCACTGTGGGACT
                      ____________________________________________________________
consensus AGCAGTCTTGGATGCTCTTGTTGGCCCACCCGCATCCGGTATCATCACCACTGTGGGACT
 
. : . : . : . : . : . :
rJMSF002F04+ AATATAAATTCGGCTCGAGTCCACTTTTTGTGTAATTAGAATAATGG
rJMSF047M12+ AATATAAATTCGGCTCGAGTCCACTTTTTGTGTAATTAGAATAATGGGTTTCTTCACCCA
rJMSF022D22+ AATATAAATTCGGCTCGAGTCCACTTTTTGNGTAATTAGAATAATGGGTTTCTTCACCCA
                      ____________________________________________________________
consensus AATATAAATTCGGCTCGAGTCCACTTTTTGTGTAATTAGAATAATGGGTTTCTTCACCCA
 
. : . : . : . : . : . :
rJMSF047M12+ AGTTCAGTTAAGAATATTTTATTAGCACCATCTTAGTTAGGTAGA
rJMSF022D22+ AGTTCAGTTAAGAATATTTTATTAGCACCATNTNAGTTAGGTAGAACTTGTGTATTATTA
                      ____________________________________________________________
consensus AGTTCAGTTAAGAATATTTTATTAGCACCATCTTAGTTAGGTAGAACTTGTGTATTATTA