Previous Contig 012012:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF039L24+                                                        CTGCAGGAAATCAC
                      ____________________________________________________________
consensus                                                           CTGCAGGAAATCAC
 
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rJMSF027N16+                                                    AAACCTTTTACTAACCGG
rJMSF039L24+          GAGATTGATTTTGCCCCGGAAATTGGCGAAACTAAACCCTTTAAACCTTTTACTAAACGG
rJMSF018E19+                                                             ACTAAACGG
                      ____________________________________________________________
consensus             GAGATTGATTTTGCCCCGGAAATTGGCGAAACTAAACCCTTTAAACCTTTTACTAAACGG
 
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rJMSF027N16+          TTTCATGTTCCCTATAAAGCATCAAATAGCACTGCTCCTCTTTGGTACTCAATCAAGAGA
rJMSF039L24+          TATCATGTTCCCTATAAAGCATCAGATAGCACTGAAACGTTTTGGTATTCAATCAAGAGA
rJMSF018E19+          TATCATGTTCCCTATAAAGCATCAGATAGCACTGAAACGTTTTGGTATTCAATCAAGAGA
                      ____________________________________________________________
consensus             TATCATGTTCCCTATAAAGCATCAGATAGCACTGAAACGTTTTGGTATTCAATCAAGAGA
 
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rJMSF027N16+          GCTTCAGCATATATCATAGTTCTGTCGTCATATTCAGCATATGGCAAATACACCCCTCAA
rJMSF039L24+          GCTTCAGCATATATCATAGTTCTGTCGTCATATTCAGCATATGGAAAATACACCCCTCAA
rJMSF018E19+          GCTTCAGCATATATCATAGTTCTGTCGTCATATTCAGCATATGGAAAATACACCCCTCAA
                      ____________________________________________________________
consensus             GCTTCAGCATATATCATAGTTCTGTCGTCATATTCAGCATATGGAAAATACACCCCTCAA
 
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rJMSF027N16+          TACATGTGGCTTAAACAGGAGCTGACAAAAGTTAACAGGAACGAGACACCATGGTTGATT
rJMSF039L24+          TACAAATGGCTTGAAGAGGAGCTGCCAAAAGTTAACAGGACCGAGACACCATGGTTGATT
rJMSF018E19+          TACAAATGGCTTGAAGAGGAGCTGCCAAAAGTTAACAGGACCGAGACACCATGGTTGATT
                      ____________________________________________________________
consensus             TACAAATGGCTTGAAGAGGAGCTGCCAAAAGTTAACAGGACCGAGACACCATGGTTGATT
 
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rJMSF027N16+          GTTCTTATGCATGCTCCATGGTACAACAGCTATGACTATCACTATATGGAAGGAGAAACT
rJMSF039L24+          GTTCTTATGCATTCTCCATGGTACAACAGCTATAACTATCACTATATGGAAGGAGAAACT
rJMSF018E19+          GTTCTTATGCATTCTCCATGGTACAACAGCTATAACTATCACTATATGGAAGGAGAAACT
                      ____________________________________________________________
consensus             GTTCTTATGCATTCTCCATGGTACAACAGCTATAACTATCACTATATGGAAGGAGAAACT
 
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rJMSF027N16+          ATGAGAGTAATGTACGAGGAATGGTTTGTGGAGCACAAAGTTGATGTTGTTTTTGCTGGT
rJMSF039L24+          ATGAGAGTAATGTTTGAGCCGTGGTTCGTGCAGCACAAAGTCGACCTTGTTTTTGCTGGT
rJMSF018E19+          ATGAGAGTAATGTTTGAGCCGTGGTTCGTGCAGCACAAAGTCGACCTTGTTTTTGCTGGT
                      ____________________________________________________________
consensus             ATGAGAGTAATGTTTGAGCCGTGGTTCGTGCAGCACAAAGTCGACCTTGTTTTTGCTGGT
 
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rJMSF027N16+          CATGTTCATGCTTATGAACGCTCGGAGCGCATATCGAATGTGGCGTACAACATTGTAAAT
rJMSF039L24+          CACGTTCATGCTTATGAACGCTCGGAGCGCATATCAAACGTGGCGTACAACATTGTAAAC
rJMSF018E19+          CACGTTCATGCTTATGAACGCTCGGAGCGCATATCAAACGTGGCGTACAACATTGTAAAC
                      ____________________________________________________________
consensus             CACGTTCATGCTTATGAACGCTCGGAGCGCATATCAAACGTGGCGTACAACATTGTAAAC
 
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rJMSF027N16+          GGGAAATGCACGCCTGTCCGAAACCAATCTGCCCCTATATACATCACAATTGGTGATGGA
rJMSF039L24+          GGGGAATGCACTCCTGTCCGAGACCAATCTGCCCCAGTATACATCACAATTGGTGATGGA
rJMSF018E19+          GGGGAATGCACTCCTGTCCGAGACCAATCTGCCCCAGTATACATCACAATTGGTGATGGA
                      ____________________________________________________________
consensus             GGGGAATGCACTCCTGTCCGAGACCAATCTGCCCCAGTATACATCACAATTGGTGATGGA
 
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rJMSF027N16+          GGAAACCATGAAGGCTTGGCCACCATCATGACAGAACCACAGCCAGAATACTCGGCTTTT
rJMSF039L24+          GGAAATCTTGAAGGCTTGGCCACCAACATGACAGAACCACAGCCAGAATACTCAGCTTTT
rJMSF018E19+          GGAAATCTTGAAGGCTTGGCCACCAACATGACAGAACCACAGCCAGAATACTCAGCTTTT
                      ____________________________________________________________
consensus             GGAAATCTTGAAGGCTTGGCCACCAACATGACAGAACCACAGCCAGAATACTCAGCTTTT
 
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rJMSF027N16+          CGCGAGGCGAGTTTTGGGCATGCCACACTTGACATCAAGAACAGAACCCACGCATACTAT
rJMSF039L24+          CGCGAGGCGAGTTTTGGGCATGCCACACTTGACATTAAGAACAGAACCCACGCATACTAT
rJMSF018E19+          CGCGAGGCGAGTTTTGGGCATGCCACACTTGACATTAAGAACAGAACCCACGCATACTAT
                      ____________________________________________________________
consensus             CGCGAGGCGAGTTTTGGGCATGCCACACTTGACATTAAGAACAGAACCCACGCATACTAT
 
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rJMSF027N16+          AGCTGGCATTGCAATCAAGATGGATATGCAGTGGAAGCAGATTCAATGTGGGTTTCGAAC
rJMSF039L24+          AGCTGGCATCGCAATCAAGATGGATATGCTGTAGAAGCAGATACAATGTGGGTTTCCAAC
rJMSF018E19+          AGCTGGCATCGCAATCAAGATGGATATGCTGTAGAAGCAGATACAATGTGGGTTTCCAAC
                      ____________________________________________________________
consensus             AGCTGGCATCGCAATCAAGATGGATATGCTGTAGAAGCAGATACAATGTGGGTTTCCAAC
 
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rJMSF027N16+          CGAGTTTGGCATCCAGTTGATGATTCTACAACTACCA                       
rJMSF039L24+          CGATTTTGGCATCCAGTTGATGATTCTACAACTACCAAATTGTGATTGCCACAAGCCACT
rJMSF018E19+          CGATTTTGGCATCCAGTTGATGATTCTACAACTACCAAATTGTGATTGCCACAAGCCACT
                      ____________________________________________________________
consensus             CGATTTTGGCATCCAGTTGATGATTCTACAACTACCAAATTGTGATTGCCACAAGCCACT
 
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rJMSF039L24+          TTTTTCACTTGTATCTTTTTGTTTTCTCTGTATTTTAGTGAACTCATGCAGATTAACT  
rJMSF018E19+          TTTTTCACTTGTATCTTTTTGTTTTCTCTGTATTTTAGTGAACTCATGCAGATTAACTTT
                      ____________________________________________________________
consensus             TTTTTCACTTGTATCTTTTTGTTTTCTCTGTATTTTAGTGAACTCATGCAGATTAACTTT