Previous Contig 011981:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009K19Sequence288005097 (2)gb:AF506028_18068502e-16Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequen741011981 (2)gb:AF506028_18068506e-71Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequen
JMSF017N14Sequence216005097 (2)gb:AP004013_18363702e-06Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ15711011981 (2)gb:AF506028_18068504e-46Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequen

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF009K19+ GTCCTCAATAACCTTGCACAGGTTGGAATTGCACAAGGTGTTAACGACACGACAATCT
                      ____________________________________________________________
consensus GTCCTCAATAACCTTGCACAGGTTGGAATTGCACAAGGTGTTAACGACACGACAATCT
 
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rJMSF009K19+ TGTTGTCTCTCTTCAGCTTCTGCAATTTCGTGGGTCGTCTTGGTGGCGGGATTGTTTCTG
                      ____________________________________________________________
consensus TGTTGTCTCTCTTCAGCTTCTGCAATTTCGTGGGTCGTCTTGGTGGCGGGATTGTTTCTG
 
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rJMSF009K19+ AACATTTTGTCAGGTTAAAAGCTCTTCCAAGAACGATTTGGATGACGTTCACGCAAGTAG
rJMSF017N14+ GTCAGGTTAAAAGCTCTTCCAAGAACGA-TTGGATGACGTTCACGCAAGTAG
                      ____________________________________________________________
consensus AACATTTTGTCAGGTTAAAAGCTCTTCCAAGAACGATTTGGATGACGTTCACGCAAGTAG
 
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rJMSF009K19+ TGATGATAATTACATACTTCCTATTTGCTTCTGCTCTTAACGGGACCCTCTATGTGGCCA
rJMSF017N14+ TGATGATAATTACATACTTCNTATNTGCNTCTGCTCTTAACGGGACCCTCTATGTGGCCA
                      ____________________________________________________________
consensus TGATGATAATTACATACTTCCTATTTGCTTCTGCTCTTAACGGGACCCTCTATGTGGCCA
 
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rJMSF009K19+ CAGCGCTACTCGGGATCTGCTATGGCGTTCAGTTCTCCATACTGATCCCTACTACCTCCG
rJMSF017N14+ CAGCGCTACTCGGGATCTGCTANGGCGTTCAGTTCTCCATACTGATCCCTACTACCTCCG
                      ____________________________________________________________
consensus CAGCGCTACTCGGGATCTGCTATGGCGTTCAGTTCTCCATACTGATCCCTACTACCTCCG
 
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rJMSF009K19+ AGCTTTTTGGCTTGAAGCACTTCGGGCTAATTCTCAGCTTCATGGGAATAGGGAACCCTC
rJMSF017N14+ AGCTTTTTGGCTTGAAGCACTTCGGGCTAATTCTCAGCTTCATGGGAATAGGGAACCCTC
                      ____________________________________________________________
consensus AGCTTTTTGGCTTGAAGCACTTCGGGCTAATTCTCAGCTTCATGGGAATAGGGAACCCTC
 
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rJMSF009K19+ TCGGTGCCTATCTCTTCTCGGGTCTTCTTGCTGGATATTTATATGATATCGAGGCTGCAA
rJMSF017N14+ TCGGTGCCTATCTCTTCTCGGGTCTTCTTGCTGGATATTTATATGATATCGAGGCTGCAA
                      ____________________________________________________________
consensus TCGGTGCCTATCTCTTCTCGGGTCTTCTTGCTGGATATTTATATGATATCGAGGCTGCAA
 
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rJMSF009K19+ AGCAGCATAGCGATACCTGCATCGGTCCTAACTGCTTTCGGGTAACATTCCTAGTTCTCG
rJMSF017N14+ AGCAGCATAGCGATACCTGCATCGGTCCTAACTGCTTTCGGGTAACATTCNTAGTTCTCG
                      ____________________________________________________________
consensus AGCAGCATAGCGATACCTGCATCGGTCCTAACTGCTTTCGGGTAACATTCCTAGTTCTCG
 
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rJMSF009K19+ CTGGACTTTGTTCTGCTGGCGCCTTGCTTAGCGTAGTTCTAACTGTGAGATTAAAGCCGG
rJMSF017N14+ CTGGACTTTGTTCTGCTGGCGCCTTGCTTAGCGTAGTTCTAACTGTGAGATTAAAGCCGG
                      ____________________________________________________________
consensus CTGGACTTTGTTCTGCTGGCGCCTTGCTTAGCGTAGTTCTAACTGTGAGATTAAAGCCGG
 
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rJMSF009K19+ TTTACCAGATGCTTTATGCCGGGGGCTCTTTCCGCCTGCCCCAAAGCTCAAACCACTAAC
rJMSF017N14+ TTTACCAGATGCTTTATGCCGGGGGCTCTTTCCGCCTGCCCCAAAGCTCAAACCACTAAC
                      ____________________________________________________________
consensus TTTACCAGATGCTTTATGCCGGGGGCTCTTTCCGCCTGCCCCAAAGCTCAAACCACTAAC
 
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rJMSF009K19+ ATTACTGTAACAACTACCACTTCTGGGATCTTTTGCTTTTTGTTTCTTAGATCCCATTGC
rJMSF017N14+ ATTACTGTAACAACTACCACTTCTGGGATCTTTTGCTTTTTGTTTCTTAGATCCCATTGC
                      ____________________________________________________________
consensus ATTACTGTAACAACTACCACTTCTGGGATCTTTTGCTTTTTGTTTCTTAGATCCCATTGC
 
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rJMSF009K19+ TCCCTCTTTTAGTCTCTATGGAGTAAAAAGTATGTTGTTTTGACAGTTTGAGCATCAAGA
rJMSF017N14+ TCCCTCTTTTAGTCTCTATGGAGTAAAAAGTATGTTGTTTTGACAGTTTGAGCATCAAGA
                      ____________________________________________________________
consensus TCCCTCTTTTAGTCTCTATGGAGTAAAAAGTATGTTGTTTTGACAGTTTGAGCATCAAGA
 
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rJMSF009K19+ ACTTAATATATGTAGCTACTAGG
rJMSF017N14+ ACTTAATATATGTAGCTATTAGGGCACAGGATTTTCTACTTCTGCCCTTACTGATGTATC
                      ____________________________________________________________
consensus ACTTAATATATGTAGCTATTAGGGCACAGGATTTTCTACTTCTGCCCTTACTGATGTATC
 
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rJMSF017N14+ TGCTTAAAACCACTGGGCTTTTAGCGGCTTTATTGTTATTATGATTATTAGTATTAGTAT
                      ____________________________________________________________
consensus TGCTTAAAACCACTGGGCTTTTAGCGGCTTTATTGTTATTATGATTATTAGTATTAGTAT