Previous Contig 011944:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017C23Sequence228005667 (2)802011944 (2)gb:ATAC015985_15435775e-64Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence, complete sequenc
JMSF024E08Sequence664005667 (2)gb:AP004048_18369102e-41Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ12794011944 (2)gb:ATAC015985_15435776e-64Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence, complete sequenc

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024E08+ TACTAGATGAGCCATGGAATGCA
rJMSF017C23+ TAGATGAGCAATGGAATGCA
                      ____________________________________________________________
consensus TACTAGATGAGCCATGGAATGCA
 
. : . : . : . : . : . :
rJMSF024E08+ AAGCTATCAGACTTTGGGTTAGCTAGGTTGGGTCCTCCCGAAGGGCGTACTCACGTCTCA
rJMSF017C23+ AAGCTATCAGACTTTGGGTTAGCTAGGTTGGGTCCTCCCGAAGGGCGTACTCACGTCTCA
                      ____________________________________________________________
consensus AAGCTATCAGACTTTGGGTTAGCTAGGTTGGGTCCTCCCGAAGGGCGTACTCACGTCTCA
 
. : . : . : . : . : . :
rJMSF024E08+ ACTGCGGTGGTTGGAACAATGGGATATGCTTCTCCTGAATATATTCAAACAGGTCGTCTC
rJMSF017C23+ ACTGCGGTGGTTGGAACAATGGGATATGCTTCTCCTGAATATATTCAAACAGGTCGTCTC
                      ____________________________________________________________
consensus ACTGCGGTGGTTGGAACAATGGGATATGCTTCTCCTGAATATATTCAAACAGGTCGTCTC
 
. : . : . : . : . : . :
rJMSF024E08+ ACATTCAAGAATGATGTATGGAGCTATGGAGTGTTTCTCTATGAACTCATCACAGGGAGA
rJMSF017C23+ ACATTCAAGAATGATGTATGGAGCTATGGAGTGTTTCTCTATGAACTCATCACAGGGAGA
                      ____________________________________________________________
consensus ACATTCAAGAATGATGTATGGAGCTATGGAGTGTTTCTCTATGAACTCATCACAGGGAGA
 
. : . : . : . : . : . :
rJMSF024E08+ CGCCCGTTGGATAGGAATCGTCCCAAGAGTGAGCAGAAGCTCTTGGAATGGATAAAGCCA
rJMSF017C23+ CGCCCGTTGGATAGGAATCGTCCCAAGAGTGAGCAGAAGCTCTTGGAATGGATAAAGCCA
                      ____________________________________________________________
consensus CGCCCGTTGGATAGGAATCGTCCCAAGAGTGAGCAGAAGCTCTTGGAATGGATAAAGCCA
 
. : . : . : . : . : . :
rJMSF024E08+ TATGTATCAGATTCAAAGAAGTTTCATATGATAGTAGACCCTAGGCTTGAAGGCAATTTC
rJMSF017C23+ TATGTATCAGATTCAAAGAAGTTTCATATGATAGTAGACCCTAGGCTTGAAGGCAATTTC
                      ____________________________________________________________
consensus TATGTATCAGATTCAAAGAAGTTTCATATGATAGTAGACCCTAGGCTTGAAGGCAATTTC
 
. : . : . : . : . : . :
rJMSF024E08+ GTAAGGTCAGCTCAGAAACTCTCTGTTGTTGCAAACCGCTGCTTGGTGAGACACCCAAAG
rJMSF017C23+ GTAAGGTCAGCTCAGAAACTCTCTGTTGTTGCAAACCGCTGCTTGGTGAGACACCCAAAG
                      ____________________________________________________________
consensus GTAAGGTCAGCTCAGAAACTCTCTGTTGTTGCAAACCGCTGCTTGGTGAGACACCCAAAG
 
. : . : . : . : . : . :
rJMSF024E08+ TCACGCCCAAAGATGAGTGAAGTTCTGGAGATGGTGAACAACGTTGCAGAAGCATCCACA
rJMSF017C23+ TCACGCCCAAAGATGAGTGAAGTTCTGGAGATGGTGAACAACGTTGCAGAAGCATCCACA
                      ____________________________________________________________
consensus TCACGCCCAAAGATGAGTGAAGTTCTGGAGATGGTGAACAACGTTGCAGAAGCATCCACA
 
. : . : . : . : . : . :
rJMSF024E08+ GGATTGGGGAATCCTCGGCGGCCCATAAGATCTTCACATCCTATTCCAAATAAAGACGAT
rJMSF017C23+ GGATTGGGGAATCCTCGGCGGCCCATAAGATCTTCACATCCTATTCCAAATAAAGACGAT
                      ____________________________________________________________
consensus GGATTGGGGAATCCTCGGCGGCCCATAAGATCTTCACATCCTATTCCAAATAAAGACGAT
 
. : . : . : . : . : . :
rJMSF024E08+ ATTGACAGAAAAAAAGTTAAAATATGTTAAGTGATATCAAAGTTGGAGATGGTGGCTGGC
rJMSF017C23+ ATTGACAGAAAAAAAGTTAAAATATGTTAAGTGATATCAAAGTTGGAGATGGTGGCTGGC
                      ____________________________________________________________
consensus ATTGACAGAAAAAAAGTTAAAATATGTTAAGTGATATCAAAGTTGGAGATGGTGGCTGGC
 
. : . : . : . : . : . :
rJMSF024E08+ TACATTGGTGAGAGATTTATGATGACGCGAGTCATAGAAGGAATTACTAACGTCTTCTAT
rJMSF017C23+ TACATTGGTGAGAGATTTATGATGACGCGAGTCATAGAAGGAATTACTAACGTCTTCTAT
                      ____________________________________________________________
consensus TACATTGGTGAGAGATTTATGATGACGCGAGTCATAGAAGGAATTACTAACGTCTTCTAT
 
. : . : . : . : . : . :
rJMSF024E08+ TGATCATAAAAGTAGAGTGAAGTGCAAATTCTATTAGATTGGCTATACTAATGGCTGCAA
rJMSF017C23+ TGATCATAAAAGTAGAGTGAAGTGCAAATTCTATTAGATTGGCTATACTAATGGCTGCAA
                      ____________________________________________________________
consensus TGATCATAAAAGTAGAGTGAAGTGCAAATTCTATTAGATTGGCTATACTAATGGCTGCAA
 
. : . : . : . : . : . :
rJMSF024E08+ TGATTTGGTGGTGAGAAAGCAAATGCCATAAAAATATTGTTTTGCTTTAGAAGCCCTCGA
rJMSF017C23+ TGATTTGGTGGTGAGAAAGCAAATGCCATAAAAATATTGTTTTGCTTTAGAAGCCCTCGA
                      ____________________________________________________________
consensus TGATTTGGTGGTGAGAAAGCAAATGCCATAAAAATATTGTTTTGCTTTAGAAGCCCTCGA
 
. : . : . : . : . : . :
rJMSF024E08+ TCTATTCTTTTTGGAATTTATCCTTCAATTCTGTGTCAAAAGCCAC
rJMSF017C23+ TCTATTCTTTTTGGAATTTATCCTTCAATTCTGTGTCAAAAGCCACCTGTGGTTGGCCAT
                      ____________________________________________________________
consensus TCTATTCTTTTTGGAATTTATCCTTCAATTCTGTGTCAAAAGCCACCTGTGGTTGGCCAT