Previous Contig 011867:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016B24Sequence232005597 (5)gb:ATH236870_15520541e-11Arabidopsis thaliana cnx1 gene, exons 1-13.>gb:ATHCNX1R_1553113 Arabidopsis thal749011867 (4)gb:ATH236870_15520543e-85Arabidopsis thaliana cnx1 gene, exons 1-13.>gb:ATHCNX1R_1553113 Arabidopsis thal
JMSF017J03Sequence244005597 (5)gb:ATH236870_15520547e-18Arabidopsis thaliana cnx1 gene, exons 1-13.>gb:ATHCNX1R_1553113 Arabidopsis thal791011867 (4)gb:ATH236870_15520542e-47Arabidopsis thaliana cnx1 gene, exons 1-13.>gb:ATHCNX1R_1553113 Arabidopsis thal
JMSF042E16Sequence781005597 (5)sp|Q39054|CNX1_ARATH1e-97Molybdopterin biosynthesis CNX1 protein (Molybdenum cofactor biosynthesis enzyme781011867 (4)gb:ATH236870_15520542e-87Arabidopsis thaliana cnx1 gene, exons 1-13.>gb:ATHCNX1R_1553113 Arabidopsis thal
JMSF047N10Sequence663005597 (5)sp|Q39054|CNX1_ARATH6e-77Molybdopterin biosynthesis CNX1 protein (Molybdenum cofactor biosynthesis enzyme744011867 (4)gb:ATH236870_15520542e-83Arabidopsis thaliana cnx1 gene, exons 1-13.>gb:ATHCNX1R_1553113 Arabidopsis thal

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042E16+ TCTGAGTATGAAGTCAGCAAATGCCTTATTGGAAGTGCCTGCATCCAG
                      ____________________________________________________________
consensus TCTGAGTATGAAGTCAGCAAATGCCTTATTGGAAGTGCCTGCATCCAG
 
. : . : . : . : . : . :
rJMSF042E16+ CAGTTCAGTTCCGGCTGGTGCTTCTGTGGTTGCAATTGTTATTACCGATATAAGCCATTT
                      ____________________________________________________________
consensus CAGTTCAGTTCCGGCTGGTGCTTCTGTGGTTGCAATTGTTATTACCGATATAAGCCATTT
 
. : . : . : . : . : . :
rJMSF042E16+ TCCAAGTAATAGAAGTCTGCAATCAACAGAGTCCTGCCGCTCTCAGTCGGGGCATAGGCC
rJMSF017J03+ TCGGGGCATAGGCC
                      ____________________________________________________________
consensus TCCAAGTAATAGAAGTCTGCAATCAACAGAGTCCTGCCGCTCTCAGTCGGGGCATAGGCC
 
. : . : . : . : . : . :
rJMSF042E16+ ACAAGAAGTTAATGCTTGTGTGTCTCAAAATTCTGAGTCCAGAGTAGCTATTCTCACAGT
rJMSF017J03+ ACAAGNAGTTAATGCTTGTGTGTCTCAAAATTCTGAGTCCAGAGTAGCTATTCTCACAGT
rJMSF047N10+ AGTCCAGAGTAGCTATTCTCACAGT
rJMSF016B24+ AGTCCAGAGTAGCTATTCTCACAGT
                      ____________________________________________________________
consensus ACAAGAAGTTAATGCTTGTGTGTCTCAAAATTCTGAGTCCAGAGTAGCTATTCTCACAGT
 
. : . : . : . : . : . :
rJMSF042E16+ TAGTGATACTGTTGCAGCAGGAGCAGGGCCTGATCGGAGTGGTCCACGGGCAGTTTCAGT
rJMSF017J03+ TAGTGATACTGTTGCAGCAGGAGCAGGGCCTGATCGGAGTGGTCCACGGGCAGTTTCAGT
rJMSF047N10+ TAGTGATACTGTTGCAGCAGGAGCAGGGCCTGATCGGAGTGGTCCACGGGCAGTTTCAGT
rJMSF016B24+ TAGTGATACTGTTGCAGCAGGAGCAGGGCCTGATCGGAGTGGTCCACGGGCAGTTTCAGT
                      ____________________________________________________________
consensus TAGTGATACTGTTGCAGCAGGAGCAGGGCCTGATCGGAGTGGTCCACGGGCAGTTTCAGT
 
. : . : . : . : . : . :
rJMSF042E16+ TGTGAATTCATCATCAGAGAGGCTAGGAGGGGCAAGAGTAGTTACAACAGCTGTTGTTCC
rJMSF017J03+ TGTGAATTCATCATCAGAGAGGCTAGGAGGGGCAAGAGTAGTTACAACAGCTGTTGTTCC
rJMSF047N10+ TGTGAATTCATCATCAGAGAGGCTAGGAGGGGCAAGAGTAGTTACAACAGCTGTTGTTCC
rJMSF016B24+ TGTGAATTCATCATCAGAGAGGCTAGGAGGGGCAAGAGTAGTTACAACAGCTGTTGTTCC
                      ____________________________________________________________
consensus TGTGAATTCATCATCAGAGAGGCTAGGAGGGGCAAGAGTAGTTACAACAGCTGTTGTTCC
 
. : . : . : . : . : . :
rJMSF042E16+ AGATGACATTCAAAAGATTAGGGATATTTTGCTGAGGTGGTGCGATATTGACCACATGGA
rJMSF017J03+ AGATGACATTCAAAAGATTAGGGATATTTTGCTGAGGTGGTGCGATATTGACCACATGGA
rJMSF047N10+ AGATGACATTCAAAAGATTAGGGATATTTTGCTGAGGTGTTGCGATATTGACCACATGGA
rJMSF016B24+ AGATGACATTCAAAAGATTAGGGATATTTTGCTGAGGTGGTGCGATATTGACCACATGGA
                      ____________________________________________________________
consensus AGATGACATTCAAAAGATTAGGGATATTTTGCTGAGGTGGTGCGATATTGACCACATGGA
 
. : . : . : . : . : . :
rJMSF042E16+ TCTTGTTCTTACCCTAGGTGGGACTGGATGTAGTCCAAGGGACGTCACTCCTGAAGCTAC
rJMSF017J03+ TCTTGTTCTTACCCTAGGTGGGACTGGATGTAGTCCAAGGGACGTCACTCCTGAAGCTAC
rJMSF047N10+ TCTTGTTCTTACCCTAGGTGGGACTGGATGTAGTCCAAGGGACGTCACTCCTGAAGCTAC
rJMSF016B24+ TCTTGTTCTTACCCTAGGTGGGACTGGATGTAGTCCAAGGGACGTCACTCCTGAAGCTAC
                      ____________________________________________________________
consensus TCTTGTTCTTACCCTAGGTGGGACTGGATGTAGTCCAAGGGACGTCACTCCTGAAGCTAC
 
. : . : . : . : . : . :
rJMSF042E16+ TAAACCTTTGCTTCAGAAAGAGACACCTGGTCTTCTACATGTCATGATGCAGGAGAGTTT
rJMSF017J03+ TAAACCTTTGCTTCAGAAAGAGACACCTGGTCTTCTACATGTCATGATGCAGGAGAGTTT
rJMSF047N10+ TAAACCTTTGCTTCAGAAAGAGACACCTGGTCTTCTACATGTCATGATGCAGGAGAGTTT
rJMSF016B24+ TAAACCTTTGCTTCAGAAAGAGACACCTGGTCTTCTACATGTCATGATGCAGGAGAGTTT
                      ____________________________________________________________
consensus TAAACCTTTGCTTCAGAAAGAGACACCTGGTCTTCTACATGTCATGATGCAGGAGAGTTT
 
. : . : . : . : . : . :
rJMSF042E16+ AAAGATCACACCATTTGCAATGCTCTCCCGCCCAGCAGCTGGCATAAGAGGGTCCACATT
rJMSF017J03+ AAAGATCACACCATTTGCAATGCTCT-CCGCCCAGCAGCTGGCATAAGAGGGTCCACATT
rJMSF047N10+ AAAGATCACACCATTTGCAATGCTCTCCCGCCCAGCAGCTGGCATAAGAGGGTCCACATT
rJMSF016B24+ AAAGATCACACCATTTGCAATGCTCTCCCGCCCAGCAGCTGGCATAAGAGGGTCCACATT
                      ____________________________________________________________
consensus AAAGATCACACCATTTGCAATGCTCTCCCGCCCAGCAGCTGGCATAAGAGGGTCCACATT
 
. : . : . : . : . : . :
rJMSF042E16+ GATTATAAACATGCCCGGGAATCCTAACGCAGTCGCTGAATGCATGGAGCCACTGCTACC
rJMSF017J03+ GATTATAAACATGCCCGGGAATCCTAACGCAGTCGCTGAATGCATGGAGCCACTGCTACC
rJMSF047N10+ GATTATAAACATGCCCGGGAATCCTAACGCAGTCGCTGAATGCATGGAGCCACTGCTACC
rJMSF016B24+ GATTATAAACATGCCCGGGAATCCTAACGCAGTCGCTGAATGCATGGAGCCACTGCTACC
                      ____________________________________________________________
consensus GATTATAAACATGCCCGGGAATCCTAACGCAGTCGCTGAATGCATGGAGCCACTGCTACC
 
. : . : . : . : . : . :
rJMSF042E16+ TGCTCTTAAGCATGCGCTGAAGCAGATCCGAGGCGACAAGAGAGAGAAGAATCCTCGTCA
rJMSF017J03+ TGCTCTTAAGCATGCGCTGAAGCAGATCCGAGGCGACAAGAGAGAGAAGAATCCTCGTCA
rJMSF047N10+ TGCTCTTAAGCATGCGCTGAAGCAGATCCGAGGCGACAAGAGAGAGAAGAATCCTCGTCA
rJMSF016B24+ TGCTCTTAAGCATGCGCTGAAGCAGATCCGAGGCGACAAGAGAGAGAAGAATCCTCGTCA
                      ____________________________________________________________
consensus TGCTCTTAAGCATGCGCTGAAGCAGATCCGAGGCGACAAGAGAGAGAAGAATCCTCGTCA
 
. : . : . : . : . : . :
rJMSF042E16+ TGTTCCTCATGCAGATGCAGTTCCTGCAGATACTTGGGAGCGTAGTCACAAGTTAGCTTC
rJMSF017J03+ TGTTCCTCATGCAGATGCAGTTCCTGCAGATACTTGGGAGCGTAGTCACAAGTTAGCTTC
rJMSF047N10+ TGTTCCTCATGCAGATGCAGTTCCTGCAGATACTTGGGAGCGTAGTCACAAGTTAGCTTC
rJMSF016B24+ TGTTCCTCATGCAGATGCAGTTCCTGCAGATACTTGGGAGCGTAGTCACAAGTTAGCTTC
                      ____________________________________________________________
consensus TGTTCCTCATGCAGATGCAGTTCCTGCAGATACTTGGGAGCGTAGTCACAAGTTAGCTTC
 
. : . : . : . : . : . :
rJMSF042E16+ GAT
rJMSF017J03+ GATTGGAGAAGAGCCTACTTGTTCATGTTCACACTGAAAGTTTTACTCCCTACAGGCAAG
rJMSF047N10+ GATTGGAGAAGAGCCTACTTGTTCATGTTCACACTGAAAGTTTTACTCCCTACAGGCAAG
rJMSF016B24+ GATTGGAGAAGAGCCTACTTGTTCATGTTCACACTGAAAGTTTTACTCCCTACAGGCAAG
                      ____________________________________________________________
consensus GATTGGAGAAGAGCCTACTTGTTCATGTTCACACTGAAAGTTTTACTCCCTACAGGCAAG
 
. : . : . : . : . : . :
rJMSF017J03+ CTAATTGCTTTTTGAGACCATGTGTTGCATTGTTTCATAAAATAAGTGAACTCGGCATAT
rJMSF047N10+ CTAATTGCTTTTTGAGACCATGTGTTGCATTGTTTCATAAAATAAGTGAACTCGGCATAT
rJMSF016B24+ CTAATTGCTTTTTGAGACCATGTGTTGCATTGTTTCATAAAATAAGTGAACTCGGCATAT
                      ____________________________________________________________
consensus CTAATTGCTTTTTGAGACCATGTGTTGCATTGTTTCATAAAATAAGTGAACTCGGCATAT
 
. : . : . : . : . : . :
rJMSF017J03+ ATATATATAATATATGCATCTGTAAGTTCATATCCTAAGGGAAACTCAACATTGTATA
rJMSF047N10+ ATATATATAATATATGCATCTGTAAGTTCATATCCTAAGGGAAACTCAACATTGTATA
rJMSF016B24+ ATATATATAATATATGCATCTGTAAGTTCATATCCTAAGGGAAACTCAACATTGTATATG
                      ____________________________________________________________
consensus ATATATATAATATATGCATCTGTAAGTTCATATCCTAAGGGAAACTCAACATTGTATATG