Previous Contig 011800:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014N08Sequence436005504 (3)gb:ITU51740_16833074e-19Ipomoea trifida secreted glycoprotein 3 (ISG3) mRNA, complete cds.798011800 (2)gb:ITU20948_16833006e-69Ipomoea trifida receptor protein kinase (IRK1) mRNA, complete cds.
JMSF046K17Sequence740005504 (3)gb:ITU51740_16833079e-56Ipomoea trifida secreted glycoprotein 3 (ISG3) mRNA, complete cds.721011800 (2)gb:AB092809_15251125e-56Lotus corniculatus var. japonicus HAR1 gene for LRR receptor-like kinase, hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014N08+ TGGACTACTTCGTATTTGA
                      ____________________________________________________________
consensus TGGACTACTTCGTATTTGA
 
. : . : . : . : . : . :
rJMSF046K17+ GGGAATATC
rJMSF014N08+ TGAGAGCAGAAANGGAATACNTACATGGCAAACACGTTTTGTAATTGCGACGGGAATATC
                      ____________________________________________________________
consensus TGAGAGCAGAAANGGAATACNTACATGGCAAACACGTTTTGTAATTGCGACGGGAATATC
 
. : . : . : . : . : . :
rJMSF046K17+ ACGTGGACTCCTTTATCTTCANCAAGACTCCAGATTGAAAATTNTACATAGAGATCNGAA
rJMSF014N08+ ACGTGGACTCCTTTATCTTCACCAAGACTCCAGATTGAAAATTATACATAGAGATCTGAA
                      ____________________________________________________________
consensus ACGTGGACTCCTTTATCTTCACCAAGACTCCAGATTGAAAATTATACATAGAGATCTGAA
 
. : . : . : . : . : . :
rJMSF046K17+ GACGAGCAACATATTACTGGATGCTGAATTGAACCCCAAGATTTCTGNCTTTGGCCTTGC
rJMSF014N08+ GACGAGCAACATATTACTGGATGCTGAATTGAACCCCAAGATTTCTGACTTTGGCCTTGC
                      ____________________________________________________________
consensus GACGAGCAACATATTACTGGATGCTGAATTGAACCCCAAGATTTCTGACTTTGGCCTTGC
 
. : . : . : . : . : . :
rJMSF046K17+ TAGAATTGTAGAAGANGATGATGGCCTAGCAAAAACGAAGAGAGTTATAGGGACNTATGG
rJMSF014N08+ TAGAATTGTAGAAGAAGATGATGGCCTAGCAAAAACGAAGAGAGTTATAGGGACATATGG
                      ____________________________________________________________
consensus TAGAATTGTAGAAGAAGATGATGGCCTAGCAAAAACGAAGAGAGTTATAGGGACATATGG
 
. : . : . : . : . : . :
rJMSF046K17+ TTACATGTCACCCGAGTACGTCGTTGATGGAAACTTCTCTGTAAAATCAGATGTTTTCAN
rJMSF014N08+ TTACATGTCACCCGAGTACGTCGTTGATGGAAACTTCTCTGTAAAATCAGATGTTTTCAG
                      ____________________________________________________________
consensus TTACATGTCACCCGAGTACGTCGTTGATGGAAACTTCTCTGTAAAATCAGATGTTTTCAG
 
. : . : . : . : . : . :
rJMSF046K17+ CCTTGGAGTGATTTTATTGGAACTCANTAGTGGAAGAAAGAACAGGGCATTTCATGATTC
rJMSF014N08+ CCTTGGAGTGATTTTATTGGAACTCATTAGTGGAAGAAAGAACAGGGCATTTCATGATTC
                      ____________________________________________________________
consensus CCTTGGAGTGATTTTATTGGAACTCATTAGTGGAAGAAAGAACAGGGCATTTCATGATTC
 
. : . : . : . : . : . :
rJMSF046K17+ AGATCATCACCACAATCTTCTGGGTCATGCATGGCTATTGTGGAATGATGGCANCCCNTT
rJMSF014N08+ AGATCATCACCACAATCTTCTGGGTCATGCATGGCTATTGTGGAATGATGGCAACCCTTT
                      ____________________________________________________________
consensus AGATCATCACCACAATCTTCTGGGTCATGCATGGCTATTGTGGAATGATGGCAACCCTTT
 
. : . : . : . : . : . :
rJMSF046K17+ CGAACTAATGGATAATTGNGTGAGAGACTCTTATGTGGAATCTCAAGTAGCTNCGATGCA
rJMSF014N08+ AGAACTAATGGATAATTGTGTGAGAGACTCTTATGTGGAATCTCAAGTA-CTACGATGCA
                      ____________________________________________________________
consensus CGAACTAATGGATAATTGTGTGAGAGACTCTTATGTGGAATCTCAAGTAGCTACGATGCA
 
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rJMSF046K17+ TTCATGTAGCTCTTCTTTGCGTTTCGAAACTACCAGAAGATAGACCAACAATGGCATCAG
rJMSF014N08+ TTCATGTAGCTCTTCTTTGCGTTTCGAAACTACCAGAAGATAGACCAACAATGGCATCAG
                      ____________________________________________________________
consensus TTCATGTAGCTCTTCTTTGCGTTTCGAAACTACCAGAAGATAGACCAACAATGGCATCAG
 
. : . : . : . : . : . :
rJMSF046K17+ TAGTTTTCATGTTGGNGAACGAGGAAGTAGCTTTACCTAAACCAAAAGAGCCAGGCTTCT
rJMSF014N08+ TAGTTTTCATGTTGGAGAACGAGGAAGTAGCTTTACCTAAACCAAAAGAGCCAGGCTTCT
                      ____________________________________________________________
consensus TAGTTTTCATGTTGGAGAACGAGGAAGTAGCTTTACCTAAACCAAAAGAGCCAGGCTTCT
 
. : . : . : . : . : . :
rJMSF046K17+ TTGTGGAAAGGAATTCAACCGAAGCATCTTCT
rJMSF014N08+ TTGTGGAAAGGAATTCAACCGAAGCATCTTCTACAGATAAGGAAAGATGCTGCTATGAAA
                      ____________________________________________________________
consensus TTGTGGAAAGGAATTCAACCGAAGCATCTTCTACAGATAAGGAAAGATGCTGCTATGAAA
 
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rJMSF014N08+ TCGCAATGATAACATTCAGCACTCTTGAAGGTAGATGAAAACAACATAATTTCGATTGTA
                      ____________________________________________________________
consensus TCGCAATGATAACATTCAGCACTCTTGAAGGTAGATGAAAACAACATAATTTCGATTGTA
 
. : . : . : . : . : . :
rJMSF014N08+ TCTCTCTATGTATCACATTGCATCTCCCTCTATTGCTTCTAACTCAATCGTACTCCCACC
                      ____________________________________________________________
consensus TCTCTCTATGTATCACATTGCATCTCCCTCTATTGCTTCTAACTCAATCGTACTCCCACC