clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF003J02 | Sequence | 135 | 004532 (2) | 533 | 011714 (8) | gb:AY389755_1178362 | 5e-26 | Hyacinthus orientalis ribonucleoside-diphosphate reductase R2 mRNA, partial cds. | |||
JMSF012O09 | Sequence | 310 | 007894 (2) | 762 | 011714 (8) | sp|P49730|RIR2_TOBAC | e-100 | Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r | |||
JMSF027K11 | Sequence | 676 | 011714 (8) | sp|P49730|RIR2_TOBAC | e-101 | Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r | 759 | 011714 (8) | sp|P49730|RIR2_TOBAC | e-111 | Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r |
JMSF032K04 | Sequence | 720 | 011714 (8) | sp|P49730|RIR2_TOBAC | e-111 | Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r | 707 | 011714 (8) | sp|P49730|RIR2_TOBAC | e-105 | Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r |
JMSF044P01 | Sequence | 723 | 011714 (8) | sp|P49730|RIR2_TOBAC | e-111 | Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r | 760 | 011714 (8) | sp|P49730|RIR2_TOBAC | e-105 | Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r |
This contig is upended
. : . : . : . : . : . :
rJMSF003J02- GAACTTCAAGATCTTAGCTTTAATCAAGAAAAAGAAGAATTAAA
____________________________________________________________
consensus GAACTTCAAGATCTTAGCTTTAATCAAGAAAAAGAAGAATTAAA
. : . : . : . : . : . :
rJMSF003J02- AGATCTCAACTTTAATCAAGAAGAAAAAAAAAAAACCATCNCTTCNCTTCTTCATNGNCT
JMSF027K11- CT
JMSF044P01- CT
JMSF032K04- CT
____________________________________________________________
consensus AGATCTCAACTTTAATCAAGAAGAAAAAAAAAAAACCATCNCTTCNCTTCTTCATNGNCT
. : . : . : . : . : . :
rJMSF003J02- CAAAGCCCTAGCAATCCCTAGATCCAATTTCGCTGAANAAAANGCCTTCGATTCCGGAAN
JMSF027K11- CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
JMSF044P01- CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
JMSF032K04- CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
____________________________________________________________
consensus CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
. : . : . : . : . : . :
rJMSF003J02- AGCCTCTTCTCGCCCCCAATCCANACCGATTCNGTANGTTCCCGATNGAGTACCCGCAAA
JMSF027K11- AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
JMSF044P01- AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
JMSF032K04- AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
____________________________________________________________
consensus AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
. : . : . : . : . : . :
rJMSF003J02- TCNGGGNGATGTATAANAAAGCTGTTGCGTCTTTCNGGACGGGGGAGGAGGTCGATCTCT
JMSF027K11- TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
JMSF044P01- TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
JMSF032K04- TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
____________________________________________________________
consensus TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
. : . : . : . : . : . :
rJMSF003J02- CTCAGGATCNCCGTCAGGGGGAAGCCCTAACCTCTGANAATTGAAACNCTTTATTAAACN
JMSF027K11- CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
JMSF044P01- CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
JMSF032K04- CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
____________________________________________________________
consensus CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
. : . : . : . : . : . :
rJMSF003J02- CGTACTTGCCTTTTTTGCCGCCNCCNACNACNTCGTTTTGGANAATCTTGCTGGACGGTT
JMSF027K11- CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
JMSF044P01- CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
JMSF032K04- CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
____________________________________________________________
consensus CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
. : . : . : . : . : . :
rJMSF003J02- GATGAAGGAGGTCTANATTACGGAGGCGCGGGCATTTTATGGATTCTAGACCNCCATTGA
JMSF027K11- CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
JMSF044P01- CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
JMSF032K04- CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
____________________________________________________________
consensus CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
. : . : . : . : . : . :
rJMSF003J02- GAATATCCA
JMSF027K11- GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
JMSF044P01- GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
JMSF032K04- GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
rJMSF044P01+ TCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
rJMSF032K04+ CATCAAGGATTCTGAAGA
rJMSF027K11+ TCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
____________________________________________________________
consensus GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
. : . : . : . : . : . :
JMSF027K11- GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
JMSF044P01- GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
JMSF032K04- GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF044P01+ GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF032K04+ GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF027K11+ GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF012O09+ CACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
____________________________________________________________
consensus GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
. : . : . : . : . : . :
JMSF027K11- GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
JMSF044P01- GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
JMSF032K04- GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF044P01+ GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF032K04+ GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF027K11+ GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF012O09+ GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
____________________________________________________________
consensus GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
. : . : . : . : . : . :
JMSF027K11- TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
JMSF044P01- TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
JMSF032K04- TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF044P01+ TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF032K04+ TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF027K11+ TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF012O09+ TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
____________________________________________________________
consensus TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
. : . : . : . : . : . :
JMSF027K11- TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGA
JMSF044P01- TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
JMSF032K04- TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF044P01+ TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF032K04+ TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF027K11+ TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF012O09+ TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
____________________________________________________________
consensus TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
. : . : . : . : . : . :
JMSF044P01- CGATTTCGCATGCTTGCTCTACGGGCTGCTGA
JMSF032K04- CGATTTCGCATGCTTGCTCTACGGGCTGCTGA
rJMSF044P01+ CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
rJMSF032K04+ CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
rJMSF027K11+ CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
rJMSF012O09+ CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
____________________________________________________________
consensus CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
. : . : . : . : . : . :
rJMSF044P01+ GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
rJMSF032K04+ GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
rJMSF027K11+ GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
rJMSF012O09+ GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
____________________________________________________________
consensus GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
. : . : . : . : . : . :
rJMSF044P01+ TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
rJMSF032K04+ TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
rJMSF027K11+ TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
rJMSF012O09+ TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
____________________________________________________________
consensus TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
. : . : . : . : . : . :
rJMSF044P01+ ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
rJMSF032K04+ ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
rJMSF027K11+ ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
rJMSF012O09+ ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
____________________________________________________________
consensus ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
. : . : . : . : . : . :
rJMSF044P01+ GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
rJMSF032K04+ GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
rJMSF027K11+ GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
rJMSF012O09+ GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
____________________________________________________________
consensus GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
. : . : . : . : . : . :
rJMSF044P01+ GAAGGCATCTGTCATGTCTAGCCTGANACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
rJMSF032K04+ GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
rJMSF027K11+ GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
rJMSF012O09+ GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
____________________________________________________________
consensus GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
. : . : . : . : . : . :
rJMSF044P01+ ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAACGT
rJMSF032K04+ ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
rJMSF027K11+ ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
rJMSF012O09+ ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
____________________________________________________________
consensus ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
. : . : . : . : . : . :
rJMSF044P01+ CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGT
rJMSF032K04+ CAACTAAAAGCACAAAAAATGATTCGTATAT
rJMSF027K11+ CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGT
rJMSF012O09+ CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGTTTTTCATTTA
____________________________________________________________
consensus CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGTTTTTCATTTA
. : . : . : . : . : . :
rJMSF012O09+ TTTCTATAAAGTATAATTTTCATACGAAATCTTGCTTATGTTGTAGATTTGTTGTTCACT
____________________________________________________________
consensus TTTCTATAAAGTATAATTTTCATACGAAATCTTGCTTATGTTGTAGATTTGTTGTTCACT