Previous Contig 011714:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003J02Sequence135004532 (2)533011714 (8)gb:AY389755_11783625e-26Hyacinthus orientalis ribonucleoside-diphosphate reductase R2 mRNA, partial cds.
JMSF012O09Sequence310007894 (2)762011714 (8)sp|P49730|RIR2_TOBACe-100Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r
JMSF027K11Sequence676011714 (8)sp|P49730|RIR2_TOBACe-101Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r759011714 (8)sp|P49730|RIR2_TOBACe-111Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r
JMSF032K04Sequence720011714 (8)sp|P49730|RIR2_TOBACe-111Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r707011714 (8)sp|P49730|RIR2_TOBACe-105Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r
JMSF044P01Sequence723011714 (8)sp|P49730|RIR2_TOBACe-111Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r760011714 (8)sp|P49730|RIR2_TOBACe-105Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide r

Alignment

This contig is upended


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rJMSF003J02-                          GAACTTCAAGATCTTAGCTTTAATCAAGAAAAAGAAGAATTAAA
                      ____________________________________________________________
consensus                             GAACTTCAAGATCTTAGCTTTAATCAAGAAAAAGAAGAATTAAA
 
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rJMSF003J02-          AGATCTCAACTTTAATCAAGAAGAAAAAAAAAAAACCATCNCTTCNCTTCTTCATNGNCT
JMSF027K11-                                                                     CT
JMSF044P01-                                                                     CT
JMSF032K04-                                                                     CT
                      ____________________________________________________________
consensus             AGATCTCAACTTTAATCAAGAAGAAAAAAAAAAAACCATCNCTTCNCTTCTTCATNGNCT
 
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rJMSF003J02-          CAAAGCCCTAGCAATCCCTAGATCCAATTTCGCTGAANAAAANGCCTTCGATTCCGGAAN
JMSF027K11-           CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
JMSF044P01-           CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
JMSF032K04-           CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
                      ____________________________________________________________
consensus             CAAAGCCCTAGCAATCCCTAGATTCGATTTCGCTGAAGAAAATGCCTTCGATTCCGGAAG
 
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rJMSF003J02-          AGCCTCTTCTCGCCCCCAATCCANACCGATTCNGTANGTTCCCGATNGAGTACCCGCAAA
JMSF027K11-           AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
JMSF044P01-           AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
JMSF032K04-           AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
                      ____________________________________________________________
consensus             AGCCTCTTCTCGCCCCCAATCCGGACCGCTTCTGTATGTTCCCGATTGAGTACCCGCAAA
 
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rJMSF003J02-          TCNGGGNGATGTATAANAAAGCTGTTGCGTCTTTCNGGACGGGGGAGGAGGTCGATCTCT
JMSF027K11-           TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
JMSF044P01-           TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
JMSF032K04-           TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
                      ____________________________________________________________
consensus             TCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTCT
 
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rJMSF003J02-          CTCAGGATCNCCGTCAGGGGGAAGCCCTAACCTCTGANAATTGAAACNCTTTATTAAACN
JMSF027K11-           CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
JMSF044P01-           CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
JMSF032K04-           CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
                      ____________________________________________________________
consensus             CTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCGACGA--GAAGCACTTTATTAAGCA
 
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rJMSF003J02-          CGTACTTGCCTTTTTTGCCGCCNCCNACNACNTCGTTTTGGANAATCTTGCTGGACGGTT
JMSF027K11-           CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
JMSF044P01-           CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
JMSF032K04-           CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
                      ____________________________________________________________
consensus             CATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGGTT
 
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rJMSF003J02-          GATGAAGGAGGTCTANATTACGGAGGCGCGGGCATTTTATGGATTCTAGACCNCCATTGA
JMSF027K11-           CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
JMSF044P01-           CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
JMSF032K04-           CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
                      ____________________________________________________________
consensus             CATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTTACGGATTCCAGATCGCCATCGA
 
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rJMSF003J02-          GAATATCCA                                                   
JMSF027K11-           GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
JMSF044P01-           GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
JMSF032K04-           GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
rJMSF044P01+                    TCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
rJMSF032K04+                                                    CATCAAGGATTCTGAAGA
rJMSF027K11+                    TCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
                      ____________________________________________________________
consensus             GAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCTGAAGA
 
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JMSF027K11-           GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
JMSF044P01-           GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
JMSF032K04-           GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF044P01+          GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF032K04+          GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF027K11+          GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
rJMSF012O09+                          CACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
                      ____________________________________________________________
consensus             GAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCTAAGTG
 
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JMSF027K11-           GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
JMSF044P01-           GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
JMSF032K04-           GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF044P01+          GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF032K04+          GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF027K11+          GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
rJMSF012O09+          GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
                      ____________________________________________________________
consensus             GGCTCTCCGCTGGATTGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTG
 
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JMSF027K11-           TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
JMSF044P01-           TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
JMSF032K04-           TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF044P01+          TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF032K04+          TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF027K11+          TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
rJMSF012O09+          TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
                      ____________________________________________________________
consensus             TGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAAAAGCGCGG
 
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JMSF027K11-           TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGA               
JMSF044P01-           TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
JMSF032K04-           TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF044P01+          TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF032K04+          TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF027K11+          TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
rJMSF012O09+          TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
                      ____________________________________________________________
consensus             TCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGCTTGCACTG
 
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JMSF044P01-           CGATTTCGCATGCTTGCTCTACGGGCTGCTGA                            
JMSF032K04-           CGATTTCGCATGCTTGCTCTACGGGCTGCTGA                            
rJMSF044P01+          CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
rJMSF032K04+          CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
rJMSF027K11+          CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
rJMSF012O09+          CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
                      ____________________________________________________________
consensus             CGATTTCGCATGCTTGCTCTACGGGCTGCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAA
 
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rJMSF044P01+          GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
rJMSF032K04+          GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
rJMSF027K11+          GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
rJMSF012O09+          GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
                      ____________________________________________________________
consensus             GTCACTTGTGGCTGAAGCTGTTGATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTG
 
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rJMSF044P01+          TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
rJMSF032K04+          TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
rJMSF027K11+          TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
rJMSF012O09+          TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
                      ____________________________________________________________
consensus             TGCTTTGGTGGGGATGAATGGGGATCTGATGAGCCAATACATAGAATTTGTGGCTGATAG
 
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rJMSF044P01+          ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
rJMSF032K04+          ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
rJMSF027K11+          ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
rJMSF012O09+          ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
                      ____________________________________________________________
consensus             ATTGCTAGGTGCATTGGGATGCAGTAAGATGTACAATGTTCAGAATCCGTTTGATTGGAT
 
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rJMSF044P01+          GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
rJMSF032K04+          GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
rJMSF027K11+          GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
rJMSF012O09+          GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
                      ____________________________________________________________
consensus             GGAGCTGATCAGCTTACAGGGAAAGACCAATTTCTTTGAGAAGAGGGTTGGAGAATATCA
 
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rJMSF044P01+          GAAGGCATCTGTCATGTCTAGCCTGANACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
rJMSF032K04+          GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
rJMSF027K11+          GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
rJMSF012O09+          GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
                      ____________________________________________________________
consensus             GAAGGCATCTGTCATGTCTAGCCTGA-ACGGTAGTGGTGACACCCATGTGTTCAAGTTGG
 
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rJMSF044P01+          ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAACGT
rJMSF032K04+          ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
rJMSF027K11+          ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
rJMSF012O09+          ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
                      ____________________________________________________________
consensus             ATGAAGACTTCTAATTTAGATAGTTTAATTATTTGTTGTCTCTTACCTTGTTTGTAA-GT
 
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rJMSF044P01+          CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGT          
rJMSF032K04+          CAACTAAAAGCACAAAAAATGATTCGTATAT                             
rJMSF027K11+          CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGT          
rJMSF012O09+          CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGTTTTTCATTTA
                      ____________________________________________________________
consensus             CAACTAAAAGCACAAAAAATGATTCGTATATTGTCTAGTTTCTGTAACGTTTTTCATTTA
 
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rJMSF012O09+          TTTCTATAAAGTATAATTTTCATACGAAATCTTGCTTATGTTGTAGATTTGTTGTTCACT
                      ____________________________________________________________
consensus             TTTCTATAAAGTATAATTTTCATACGAAATCTTGCTTATGTTGTAGATTTGTTGTTCACT