Previous Contig 011642:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011K17Sequence418005264 (2)gb:AF417483_17982823e-13Zea mays origin recognition complex subunit 3 (orc3) mRNA, complete cds.735011642 (2)gb:AB100408_15262644e-31Oryza sativa (japonica cultivar-group) ORC3 mRNA for origin recognition complex3
JMSF025F11Sequence687005264 (2)gb:AY524002_16113992e-42Arabidopsis thaliana origin recognition complex protein 3 (ORC3) mRNA, complete 763011642 (2)gb:AY524002_16113993e-53Arabidopsis thaliana origin recognition complex protein 3 (ORC3) mRNA, complete

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF025F11+ CACGAGGCAGAGCAAAATGTGCAAATGATGAGGACATATTT
                      ____________________________________________________________
consensus CACGAGGCAGAGCAAAATGTGCAAATGATGAGGACATATTT
 
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rJMSF025F11+ AATGAGAAAGCTGCTAATTTGGTTTATGACATGATGAGGGAATGCATGCAGCCAATTGAG
                      ____________________________________________________________
consensus AATGAGAAAGCTGCTAATTTGGTTTATGACATGATGAGGGAATGCATGCAGCCAATTGAG
 
. : . : . : . : . : . :
rJMSF025F11+ TCTATACCATTTCATGAAATTGTTTGCTTCAAGGATGTTGATAAGCTTCAATCAGCTCTG
                      ____________________________________________________________
consensus TCTATACCATTTCATGAAATTGTTTGCTTCAAGGATGTTGATAAGCTTCAATCAGCTCTG
 
. : . : . : . : . : . :
rJMSF025F11+ ACAGGTGACCCCAGGAGAAGAATCCAAAGTGACCTTCTGGAGTTCCAAAAAATACTCAAG
rJMSF011K17+ CAAAAAATACTCAAG
                      ____________________________________________________________
consensus ACAGGTGACCCCAGGAGAAGAATCCAAAGTGACCTTCTGGAGTTCCAAAAAATACTCAAG
 
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rJMSF025F11+ TGTAGTTGCTGCAGCAAGGGTGGTGTTTTGCTGTCACCATCCATGCATGATACCTCAATC
rJMSF011K17+ TGTAGTTGCTGCAGCAAGGGTGGTGTTTTGCTGTCACCATCCATGCATGATACCTCAATC
                      ____________________________________________________________
consensus TGTAGTTGCTGCAGCAAGGGTGGTGTTTTGCTGTCACCATCCATGCATGATACCTCAATC
 
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rJMSF025F11+ ATGTATACCCTGGCGCAAGAGCATGGTGATCTCATCAACCTTCATGATTGGTTTCAGTCT
rJMSF011K17+ ATGTATACCCTGGCGCAAGAGCATGGTGATCTCATCAACCTTCATGATTGGTTTCAGTCT
                      ____________________________________________________________
consensus ATGTATACCCTGGCGCAAGAGCATGGTGATCTCATCAACCTTCATGATTGGTTTCAGTCT
 
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rJMSF025F11+ TTTAATGCAACTGTTTCTTGCCTGAAACGATCAAAGCAGCTGTGTTCACCCAAAAAGAGA
rJMSF011K17+ TTTAATGCAACTGTTTCTTGCCTGAAACGATCAAAGCAGCTGTGTTCACCCAAAAAGAGA
                      ____________________________________________________________
consensus TTTAATGCAACTGTTTCTTGCCTGAAACGATCAAAGCAGCTGTGTTCACCCAAAAAGAGA
 
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rJMSF025F11+ AAAGTTACTAATGTTCTTCAAAACAAATCTGATGCATCAATACAAGCAAGGTTTTGCAGG
rJMSF011K17+ AAAGTTACTAATGTTCTTCAAAACAAATCTGATGCATCAATACAAGCAAGGTTTTGCAGG
                      ____________________________________________________________
consensus AAAGTTACTAATGTTCTTCAAAACAAATCTGATGCATCAATACAAGCAAGGTTTTGCAGG
 
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rJMSF025F11+ GCCATAATTGAGCTGCAGATAGCAGGTTTGCTTCGGGCACCCAGCAAAAGGCGCCCAGAT
rJMSF011K17+ GCCATAATTGAGCTGCAGATAGCAGGTTTGCTTCGGGCACCCAGCAAAAGGCGCCCAGAT
                      ____________________________________________________________
consensus GCCATAATTGAGCTGCAGATAGCAGGTTTGCTTCGGGCACCCAGCAAAAGGCGCCCAGAT
 
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rJMSF025F11+ TATGTGCAGAGGGTAGCCTTTGGATTGTAACTTGGAATTTAGGTGATGGAGATCAACTCG
rJMSF011K17+ TATGTGCAGAGGGTAGCCTTTGGATTGTAACTTGGAATTTAGGTGATGGAGATCAACTCG
                      ____________________________________________________________
consensus TATGTGCAGAGGGTAGCCTTTGGATTGTAACTTGGAATTTAGGTGATGGAGATCAACTCG
 
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rJMSF025F11+ ATTGATATATTGTGCAGTTGAAGAACTTTACCAGGAATCCATGCTTGCATAATTGCTACC
rJMSF011K17+ ATTGATATATTGTGCAGTTGAAGAACTTTACCAGGAATCCATGCTTGCATAATTGCTACC
                      ____________________________________________________________
consensus ATTGATATATTGTGCAGTTGAAGAACTTTACCAGGAATCCATGCTTGCATAATTGCTACC
 
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rJMSF025F11+ TCTACCTGCTAAGAAAAGCACAAGACTGACTGCATGGTGGAGTGTTTCAATCCCAACACA
rJMSF011K17+ TCTACCTGCTAAGAAAAGCACAAGACTGACTGCATGGTGGAGTGTTTCAATCCCAACACA
                      ____________________________________________________________
consensus TCTACCTGCTAAGAAAAGCACAAGACTGACTGCATGGTGGAGTGTTTCAATCCCAACACA
 
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rJMSF025F11+ TTTCTGTCAGGTGATGACTAGAAACTAACATTTGTTAAGCTGTGTATGTAGAGTTTTAAC
rJMSF011K17+ TTTCTGTCAGGTGATGACTAGAAACTAACATTTGTTAAGCTGTGTATGTAGAGTTTTAAC
                      ____________________________________________________________
consensus TTTCTGTCAGGTGATGACTAGAAACTAACATTTGTTAAGCTGTGTATGTAGAGTTTTAAC
 
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rJMSF025F11+ AT
rJMSF011K17+ ATTCCAACTCTAGGTTTTACTGTAATTCTCCCTCTGAAACCTTTTGCCTCTTCCATAGTC
                      ____________________________________________________________
consensus ATTCCAACTCTAGGTTTTACTGTAATTCTCCCTCTGAAACCTTTTGCCTCTTCCATAGTC
 
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rJMSF011K17+ ACCCTTCTTCTGCATTGTGAGTTCATAGTTTTCTCTTGCGCCGAGCAAAACCTGTTGTAT
                      ____________________________________________________________
consensus ACCCTTCTTCTGCATTGTGAGTTCATAGTTTTCTCTTGCGCCGAGCAAAACCTGTTGTAT
 
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rJMSF011K17+ TAGTAGTAGTGTTCCTTTAAGATTCCGGGCTATAGCTTGAACCTTTGCTTTGTTATATCT
                      ____________________________________________________________
consensus TAGTAGTAGTGTTCCTTTAAGATTCCGGGCTATAGCTTGAACCTTTGCTTTGTTATATCT