clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF010K21 | Sequence | 280 | 011586 (4) | 774 | 011586 (4) | gb:AP004764_1844635 | 1e-47 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P070 | |||
JMSF012L18 | Sequence | 472 | 011586 (4) | gb:AY045915_1561417 | 3e-26 | Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.>gb:AY133880 | 682 | 011586 (4) | gb:AP004764_1844635 | 3e-47 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P070 |
This contig is upended
. : . : . : . : . : . :
JMSF010K21- GACCGGC
JMSF012L18- CCGGC
____________________________________________________________
consensus GACCGGC
. : . : . : . : . : . :
JMSF010K21- TTCCTCCTCTGATCTGCCACTTTCCGATCGATCGGCCGCCCTGTCGGACCCATCTTTAAT
JMSF012L18- TTCCTCCTCTGATCTGCCACTTTCCGATCGATCGGCCGCCCTGTCGGACCCATCTTTAAT
____________________________________________________________
consensus TTCCTCCTCTGATCTGCCACTTTCCGATCGATCGGCCGCCCTGTCGGACCCATCTTTAAT
. : . : . : . : . : . :
JMSF010K21- TTATTCTATCCCTTTTCATGTCTTAACTAAAAACACTACATACATATATACCCTTTCTCT
JMSF012L18- TTATTCTATCCCTTTTCATGTCTTAACTAAAAACACTACATACATATATACCCTTTCTCT
____________________________________________________________
consensus TTATTCTATCCCTTTTCATGTCTTAACTAAAAACACTACATACATATATACCCTTTCTCT
. : . : . : . : . : . :
JMSF010K21- AACCCCGGCCGGCCGCCCCATTAGCAGAGTTAAACCAATTAATTTAATTAAGCTTCTCGA
JMSF012L18- AACCCCGGCCGGCCACCCCATTAGCAGAGTTAAACCAATTAATTTAATTAAGCTTCTCGA
____________________________________________________________
consensus AACCCCGGCCGGCCGCCCCATTAGCAGAGTTAAACCAATTAATTTAATTAAGCTTCTCGA
. : . : . : . : . : . :
JMSF010K21- GCGAGCTCCATTAATGGCGAAAACCTCAAAAAAAGACAGCTCCCGCAGCGGCAGCAACGA
JMSF012L18- GCGAGCTCCATTAATGGCGAAAACCTCGAAAAAAGACAGCTCCCGCAGCGGCAGCAACGA
____________________________________________________________
consensus GCGAGCTCCATTAATGGCGAAAACCTCGAAAAAAGACAGCTCCCGCAGCGGCAGCAACGA
. : . : . : . : . : . :
JMSF010K21- CGATNACGTTGTTAAGGTGAAAAGAACTCGTAA
JMSF012L18- CGATTACGTTGTTAAGGTGAAAAGAACTCGTAAAAGCGTGCCCAGAGACTCTCCTCCTCA
____________________________________________________________
consensus CGATTACGTTGTTAAGGTGAAAAGAACTCGTAAAAGCGTGCCCAGAGACTCTCCTCCTCA
. : . : . : . : . : . :
JMSF012L18- ACGAAGCTCCGTTTTCCGAGGTGTCACCAGGCACCGGTGGACCGGCCGATATGAAGCTCA
____________________________________________________________
consensus ACGAAGCTCCGTTTTCCGAGGTGTCACCAGGCACCGGTGGACCGGCCGATATGAAGCTCA
. : . : . : . : . : . :
JMSF012L18- TCTATGGGATAAGAACAGCTGGAATGAAGCACAGAGTAAGAAAGGAAGACAAGTATATTT
rJMSF012L18+ TT
____________________________________________________________
consensus TCTATGGGATAAGAACAGCTGGAATGAAGCACAGAGTAAGAAAGGAAGACAAGTATATTT
. : . : . : . : . : . :
JMSF012L18- GGGGGCTTATGATGATGAAGAAGCAGCAGCACATGCATATGACTT
rJMSF012L18+ GGGGGCTTATGATGATGAAGAAGCAGCAGCACATGCATATGACTTGGCAGCATTGAAGTA
rJMSF010K21+ TTATGATGATGNAGAAGCAGCAGCACATGCATATGACTTGGCAGCATTGAAGTA
____________________________________________________________
consensus GGGGGCTTATGATGATGAAGAAGCAGCAGCACATGCATATGACTTGGCAGCATTGAAGTA
. : . : . : . : . : . :
rJMSF012L18+ TTGGGGACAAGAGACAATCCTAAATTTCCCACTTGCTACTTATGAAAAAGAGNTAAAGGA
rJMSF010K21+ TTGGGGACAAGAGACAATCCTAAATTTCCCACTTGCTACTTATGAAAAAGAGCTAAAGGA
____________________________________________________________
consensus TTGGGGACAAGAGACAATCCTAAATTTCCCACTTGCTACTTATGAAAAAGAGCTAAAGGA
. : . : . : . : . : . :
rJMSF012L18+ AATGGAAGGTCAATCAAAAGAAGAGTATATTGGTTCTTTGAGAAGAAAGAGCAGTGGATT
rJMSF010K21+ AATGGAAGGTCAATCAAAAGAAGAGTATATTGGTTCTTTGAGAAGAAAGAGCAGTGGATT
____________________________________________________________
consensus AATGGAAGGTCAATCAAAAGAAGAGTATATTGGTTCTTTGAGAAGAAAGAGCAGTGGATT
. : . : . : . : . : . :
rJMSF012L18+ TTCTAGGGGTGTCTCGAAATACAGAGGAGTAGCAAGACACCATCACAATGGAAGATGGGA
rJMSF010K21+ TTCTAGGGGTGTCTCGAAATACAGAGGAGTAGCAAGACACCATCACAATGGAAGATGGGA
____________________________________________________________
consensus TTCTAGGGGTGTCTCGAAATACAGAGGAGTAGCAAGACACCATCACAATGGAAGATGGGA
. : . : . : . : . : . :
rJMSF012L18+ GGCTCGCATTGGAAGGGTGTTTGGCAACAAATATCTCTACCTTGGAACTTATGCTACTCA
rJMSF010K21+ GGCTCGCATTGGAAGGGTGTTTGGCAACAAATATCTCTACCTTGGGACTTATGCTACTCA
____________________________________________________________
consensus GGCTCGCATTGGAAGGGTGTTTGGCAACAAATATCTCTACCTTGGGACTTATGCTACTCA
. : . : . : . : . : . :
rJMSF012L18+ AGAGGAAGCGGCAACGGCTTATGACATGGCAGCCATAGAGTACCGTGGGCTTAACGCCGT
rJMSF010K21+ AGAGGAAGCGGCAACGGCTTATGACATGGCAGCCATAGAGTACCGTGGGCTTAACGCCGT
____________________________________________________________
consensus AGAGGAAGCGGCAACGGCTTATGACATGGCAGCCATAGAGTACCGTGGGCTTAACGCCGT
. : . : . : . : . : . :
rJMSF012L18+ CACCAATTTTGACCTCAGCCGTTACGTCAAGTGGCTACGCCCTGATGATCAAAACCCTAA
rJMSF010K21+ CACCAATTTTGACCTCAGCCGTTACGTCAAGTGGCTACGCCCTGATGATCAAAACCCTAA
____________________________________________________________
consensus CACCAATTTTGACCTCAGCCGTTACGTCAAGTGGCTACGCCCTGATGATCAAAACCCTAA
. : . : . : . : . : . :
rJMSF012L18+ CAACCTTCAGCCAAACCCTAACCCTAGTAATGACGCCGTTAGTCATCATCATGATGAACT
rJMSF010K21+ CAACCTTCAGCCAAACCCTAACCCTAGTAATGACGCCGTTAGTCATCATCATGATGAACT
____________________________________________________________
consensus CAACCTTCAGCCAAACCCTAACCCTAGTAATGACGCCGTTAGTCATCATCATGATGAACT
. : . : . : . : . : . :
rJMSF012L18+ CATCATCACCACCCAGCAACAGCAGCAGCCGCAACAAAGCTCCGGCGGTTCATCGGAAAC
rJMSF010K21+ CATCATCACCACCCAGCAACAGCAGCAGCCGCAACAAAGCTCCGGCGGTTCATCGGAAAC
____________________________________________________________
consensus CATCATCACCACCCAGCAACAGCAGCAGCCGCAACAAAGCTCCGGCGGTTCATCGGAAAC
. : . : . : . : . : . :
rJMSF012L18+ GGCCTCTCCTCCGCCGCATGACCCCTCCGCCGCCTCCGCCACTTCGTCGGCATCTACCAA
rJMSF010K21+ GGCCTCTCCTCCGCCGCATGACCCCTCCGCCGCCTCCGCCACTTCGTCGGCATCTACCAA
____________________________________________________________
consensus GGCCTCTCCTCCGCCGCATGACCCCTCCGCCGCCTCCGCCACTTCGTCGGCATCTACCAA
. : . : . : . : . : . :
rJMSF012L18+ CTTTCCAACCACCCCGCCGGAGCCGGAGCTGGAGCCGGACCGACCGAGAAGANGTTTNCC
rJMSF010K21+ CTTTCCAACCACCCCGCCGGAGCCGGAGCTGGAGCCGGACCGACCGAGAAGAAGTTTCCC
____________________________________________________________
consensus CTTTCCAACCACCCCGCCGGAGCCGGAGCTGGAGCCGGACCGACCGAGAAGAAGTTTCCC
. : . : . : . : . : . :
rJMSF012L18+ GGACGACNTACAAACGTACT
rJMSF010K21+ GGACGACATACAAACGTACTTTGACTGCGACGACTCGAGTAGCTTTGTGGAGGAGCATGA
____________________________________________________________
consensus GGACGACATACAAACGTACTTTGACTGCGACGACTCGAGTAGCTTTGTGGAGGAGCATGA
. : . : . : . : . : . :
rJMSF010K21+ CATCATCTTTGGTGACCTAAGCTCATTTGATTCATCCATGTTTCATTGTGAGCTTGATGC
____________________________________________________________
consensus CATCATCTTTGGTGACCTAAGCTCATTTGATTCATCCATGTTTCATTGTGAGCTTGATGC