Previous Contig 011577:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010I14Sequence472005168 (2)gb:AK119039_18169845e-32Arabidopsis thaliana At2g28100 mRNA for unknown protein, complete cds, clone: RA774011577 (2)gb:AK119039_18169841e-32Arabidopsis thaliana At2g28100 mRNA for unknown protein, complete cds, clone: RA
JMSF047C16Sequence715005168 (2)gb:AK119039_18169846e-96Arabidopsis thaliana At2g28100 mRNA for unknown protein, complete cds, clone: RA758011577 (2)gb:AK119039_18169849e-32Arabidopsis thaliana At2g28100 mRNA for unknown protein, complete cds, clone: RA

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF047C16+ TGCCAGCAGCACCAAGAGGTACAAGTGACTTCCGATTTGCCCCCTATAATGTTA
rJMSF010I14+ CTGCCAGCAGCACC-AGAGGTACAAGTGACTTCCGATTTGCCCCCTATAATGTTA
                      ____________________________________________________________
consensus CTGCCAGCAGCACCAAGAGGTACAAGTGACTTCCGATTTGCCCCCTATAATGTTA
 
. : . : . : . : . : . :
rJMSF047C16+ TTAAAGAAGGCATCTATACTTATTGGGCTCCAGGACGAGAGCAATCGGAAATCATATTAT
rJMSF010I14+ TTAAAGAAGGCATCTATACTTATTGGGCTCCAGGACGAGAGCAATCGGAAATCATATTAT
                      ____________________________________________________________
consensus TTAAAGAAGGCATCTATACTTATTGGGCTCCAGGACGAGAGCAATCGGAAATCATATTAT
 
. : . : . : . : . : . :
rJMSF047C16+ ACTTGGATTTTCAAGAACAAGTGACGTTCAACATGTTAGAAGTTCAAGAGCCAATCCATA
rJMSF010I14+ ACTTGGATTTTCAAGAACAAGTGACGTTCAACATGTTAGAAGTTCAAGAGCCAATCCATA
                      ____________________________________________________________
consensus ACTTGGATTTTCAAGAACAAGTGACGTTCAACATGTTAGAAGTTCAAGAGCCAATCCATA
 
. : . : . : . : . : . :
rJMSF047C16+ TGGGGCAGCGGATTATTGCATTCCATCTCGATGTATTGAACGAATTTGGGGAATGGCAGG
rJMSF010I14+ TGGGGCAGCGGATTATTGCATTCCATCTCGATGTATTGAACGAATTTGGGGAATGGCAGG
                      ____________________________________________________________
consensus TGGGGCAGCGGATTATTGCATTCCATCTCGATGTATTGAACGAATTTGGGGAATGGCAGG
 
. : . : . : . : . : . :
rJMSF047C16+ AAGTAATAGATGGAACGACGGTGGGATACCGGAGGTTGCTGTTATTTCCCGTGGTTAAAA
rJMSF010I14+ AAGTAATAGATGGAACGACGGTGGGATACCGGAGGTTGCTGTTATTTCCCGTGGTTAAAA
                      ____________________________________________________________
consensus AAGTAATAGATGGAACGACGGTGGGATACCGGAGGTTGCTGTTATTTCCCGTGGTTAAAA
 
. : . : . : . : . : . :
rJMSF047C16+ CGTATAGTATAAGAGTTGTGATTGACGAGTGTCGGGAAGAACCTTTGATCTCTTATTTGG
rJMSF010I14+ CGTATAGTATAAGAGTTGTGATTGACGAGTGTCGGGAAGAACCTTTGATCTCTTATTTGG
                      ____________________________________________________________
consensus CGTATAGTATAAGAGTTGTGATTGACGAGTGTCGGGAAGAACCTTTGATCTCTTATTTGG
 
. : . : . : . : . : . :
rJMSF047C16+ GATTATATATGGATCCCTATTCTAATCTGGAACACAAGTCTAGTTCATGGTTTGGATCGC
rJMSF010I14+ GATTATATATGGATCCCTATTCTAATCTGGAACACAAGTCTAGTTCATGGTTTGGATCGC
                      ____________________________________________________________
consensus GATTATATATGGATCCCTATTCTAATCTGGAACACAAGTCTAGTTCATGGTTTGGATCGC
 
. : . : . : . : . : . :
rJMSF047C16+ TGCGCTTCAATGGCAGCCGGGTGAGGGAATGGCTTTCTGGTTTTATGTAGGCCTGGCTGG
rJMSF010I14+ TGCGCTTCAATGGCAGCCGGGTGAGGGAATGGCTTTCTGGTTTTATGTAGGCCTGGCTGG
                      ____________________________________________________________
consensus TGCGCTTCAATGGCAGCCGGGTGAGGGAATGGCTTTCTGGTTTTATGTAGGCCTGGCTGG
 
. : . : . : . : . : . :
rJMSF047C16+ ATTTCAACGCCAACGAAAATGTTATGTTGTTTGCAGTGGGGAAGGCTAAAGCAAAAGCAG
rJMSF010I14+ ATTTCAACGCCAACGAAAATGTTATGTTGTTTGCAGTGGGGAAGGCTAAAGCAAAAGCAG
                      ____________________________________________________________
consensus ATTTCAACGCCAACGAAAATGTTATGTTGTTTGCAGTGGGGAAGGCTAAAGCAAAAGCAG
 
. : . : . : . : . : . :
rJMSF047C16+ AATGCAATAAGGTATTGCACAGAAGTTTGGTCTGTCATGGGATGCATTTCTTGCTATAAA
rJMSF010I14+ AATGCAATAAGGTATTGCACAGAAGTTTGGTCTGTCATGGGATGCATTTCTTGCTATAAA
                      ____________________________________________________________
consensus AATGCAATAAGGTATTGCACAGAAGTTTGGTCTGTCATGGGATGCATTTCTTGCTATAAA
 
. : . : . : . : . : . :
rJMSF047C16+ TCCAGTTTTGTTGGTGAATGGGCATGAAGAAGTGAATCTAAGAAACCAAAACAACTTGTT
rJMSF010I14+ TCCAGTTTTGTTGGTGAATGGGCATGAAGAAGTGAATCTAAGAAACCAAAACAACTTGCT
                      ____________________________________________________________
consensus TCCAGTTTTGTTGGTGAATGGGCATGAAGAAGTGAATCTAAGAAACCAAAACAACTTGTT
 
. : . : . : . : . : . :
rJMSF047C16+ TTGGATTAATCGTAGCTTCAATGCTTCATTCATGATAATGGAAGGATCTTTTCTGTCTCA
rJMSF010I14+ TTGGATTAATCGTAGCTTCAATGCTTCATTCATGATAATGGAAGGATCTTTTCTGTCTCA
                      ____________________________________________________________
consensus TTGGATTAATCGTAGCTTCAATGCTTCATTCATGATAATGGAAGGATCTTTTCTGTCTCA
 
. : . : . : . : . : . :
rJMSF047C16+ TTTAGCAAATTTAAAGTGACAGTACATTTATCATTTTACATATA
rJMSF010I14+ TTTAGCAAATTTAAAGTGACAGTACATTTATCATTTTACATATATTATGTTCAAATTAGA
                      ____________________________________________________________
consensus TTTAGCAAATTTAAAGTGACAGTACATTTATCATTTTACATATATTATGTTCAAATTAGA