clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF035G15 | Sequence | 578 | 001563 (5) | sp|Q40460|RCA1_TOBAC | 9e-56 | Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R | 709 | 011560 (4) | gb:AF329935_1787093 | 4e-69 | Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mR |
JMSF006G23 | Sequence | 251 | 001563 (5) | sp|Q40460|RCA1_TOBAC | 9e-05 | Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R | 205 | 011560 (4) | gb:AB034698_1518864 | 1e-23 | Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete |
JMSF010E22 | Sequence | 310 | 001563 (5) | sp|Q40460|RCA1_TOBAC | 6e-07 | Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R | 751 | 011560 (4) | gb:AB034698_1518864 | 8e-81 | Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete |
JMSF039B03 | Sequence | 637 | 001563 (5) | sp|Q40460|RCA1_TOBAC | 2e-68 | Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R | 856 | 011560 (4) | gb:AB034698_1518864 | 9e-96 | Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete |
This contig is upended
. : . : . : . : . : . :
rJMSF039B03+ CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
____________________________________________________________
consensus CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
. : . : . : . : . : . :
rJMSF039B03+ CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
____________________________________________________________
consensus CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
. : . : . : . : . : . :
rJMSF039B03+ TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
rJMSF010E22+ TCCGTGACGGCCGTATGGAGAAGTTNTACTG
____________________________________________________________
consensus TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
. : . : . : . : . : . :
rJMSF039B03+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
rJMSF010E22+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
____________________________________________________________
consensus GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
. : . : . : . : . : . :
rJMSF039B03+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
rJMSF010E22+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
____________________________________________________________
consensus ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
. : . : . : . : . : . :
rJMSF039B03+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
rJMSF010E22+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
____________________________________________________________
consensus TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
. : . : . : . : . : . :
rJMSF039B03+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
rJMFF035G15+ CA
rJMSF010E22+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
____________________________________________________________
consensus TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
. : . : . : . : . : . :
rJMSF039B03+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMFF035G15+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMSF010E22+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
____________________________________________________________
consensus GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
. : . : . : . : . : . :
rJMSF039B03+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF006G23+ AATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCNTTGGAGATGC
rJMFF035G15+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF010E22+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
____________________________________________________________
consensus GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
. : . : . : . : . : . :
rJMSF039B03+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF006G23+ AAACGAAGATTCAATCAAGANTGGAAACTTNTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMFF035G15+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF010E22+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
____________________________________________________________
consensus AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
. : . : . : . : . : . :
rJMSF039B03+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF006G23+ TAAGGTTCCTGAAGGNTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMFF035G15+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF010E22+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
____________________________________________________________
consensus TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
. : . : . : . : . : . :
rJMSF039B03+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF006G23+ CGATGATGGAACCTGCACGTACCAGG
rJMFF035G15+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF010E22+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
____________________________________________________________
consensus CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
. : . : . : . : . : . :
rJMSF039B03+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMFF035G15+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMSF010E22+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
____________________________________________________________
consensus GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
. : . : . : . : . : . :
rJMSF039B03+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMFF035G15+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMSF010E22+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
____________________________________________________________
consensus GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
. : . : . : . : . : . :
rJMSF039B03+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAAT
rJMFF035G15+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAA
rJMSF010E22+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT
____________________________________________________________
consensus TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT