Previous Contig 011560:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035G15Sequence578001563 (5)sp|Q40460|RCA1_TOBAC9e-56Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R709011560 (4)gb:AF329935_17870934e-69Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mR
JMSF006G23Sequence251001563 (5)sp|Q40460|RCA1_TOBAC9e-05Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R205011560 (4)gb:AB034698_15188641e-23Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete
JMSF010E22Sequence310001563 (5)sp|Q40460|RCA1_TOBAC6e-07Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R751011560 (4)gb:AB034698_15188648e-81Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete
JMSF039B03Sequence637001563 (5)sp|Q40460|RCA1_TOBAC2e-68Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R856011560 (4)gb:AB034698_15188649e-96Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete

Alignment

This contig is upended


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rJMSF039B03+ CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
                      ____________________________________________________________
consensus CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
 
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rJMSF039B03+ CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
                      ____________________________________________________________
consensus CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
 
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rJMSF039B03+ TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
rJMSF010E22+ TCCGTGACGGCCGTATGGAGAAGTTNTACTG
                      ____________________________________________________________
consensus TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
 
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rJMSF039B03+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
rJMSF010E22+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
                      ____________________________________________________________
consensus GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
 
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rJMSF039B03+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
rJMSF010E22+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
                      ____________________________________________________________
consensus ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
 
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rJMSF039B03+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
rJMSF010E22+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
                      ____________________________________________________________
consensus TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
 
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rJMSF039B03+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
rJMFF035G15+ CA
rJMSF010E22+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
                      ____________________________________________________________
consensus TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
 
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rJMSF039B03+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMFF035G15+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMSF010E22+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
                      ____________________________________________________________
consensus GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
 
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rJMSF039B03+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF006G23+ AATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCNTTGGAGATGC
rJMFF035G15+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF010E22+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
                      ____________________________________________________________
consensus GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
 
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rJMSF039B03+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF006G23+ AAACGAAGATTCAATCAAGANTGGAAACTTNTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMFF035G15+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF010E22+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
                      ____________________________________________________________
consensus AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
 
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rJMSF039B03+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF006G23+ TAAGGTTCCTGAAGGNTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMFF035G15+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF010E22+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
                      ____________________________________________________________
consensus TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
 
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rJMSF039B03+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF006G23+ CGATGATGGAACCTGCACGTACCAGG
rJMFF035G15+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF010E22+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
                      ____________________________________________________________
consensus CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
 
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rJMSF039B03+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMFF035G15+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMSF010E22+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
                      ____________________________________________________________
consensus GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
 
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rJMSF039B03+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMFF035G15+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMSF010E22+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
                      ____________________________________________________________
consensus GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
 
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rJMSF039B03+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAAT
rJMFF035G15+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAA
rJMSF010E22+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT
                      ____________________________________________________________
consensus TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT