Previous Contig 011560:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035G15Sequence578001563 (5)sp|Q40460|RCA1_TOBAC9e-56Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R709011560 (4)gb:AF329935_17870934e-69Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mR
JMSF006G23Sequence251001563 (5)sp|Q40460|RCA1_TOBAC9e-05Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R205011560 (4)gb:AB034698_15188641e-23Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete
JMSF010E22Sequence310001563 (5)sp|Q40460|RCA1_TOBAC6e-07Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R751011560 (4)gb:AB034698_15188648e-81Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete
JMSF039B03Sequence637001563 (5)sp|Q40460|RCA1_TOBAC2e-68Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (R856011560 (4)gb:AB034698_15188649e-96Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete

Alignment

This contig is upended


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rJMSF039B03+                             CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
                      ____________________________________________________________
consensus                                CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
 
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rJMSF039B03+          CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
                      ____________________________________________________________
consensus             CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
 
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rJMSF039B03+          TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
rJMSF010E22+                                       TCCGTGACGGCCGTATGGAGAAGTTNTACTG
                      ____________________________________________________________
consensus             TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
 
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rJMSF039B03+          GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
rJMSF010E22+          GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
                      ____________________________________________________________
consensus             GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
 
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rJMSF039B03+          ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
rJMSF010E22+          ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
                      ____________________________________________________________
consensus             ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
 
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rJMSF039B03+          TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
rJMSF010E22+          TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
                      ____________________________________________________________
consensus             TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
 
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rJMSF039B03+          TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
rJMFF035G15+                                                                    CA
rJMSF010E22+          TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
                      ____________________________________________________________
consensus             TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
 
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rJMSF039B03+          GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMFF035G15+          GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMSF010E22+          GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
                      ____________________________________________________________
consensus             GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
 
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rJMSF039B03+          GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF006G23+           AATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCNTTGGAGATGC
rJMFF035G15+          GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF010E22+          GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
                      ____________________________________________________________
consensus             GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
 
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rJMSF039B03+          AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF006G23+          AAACGAAGATTCAATCAAGANTGGAAACTTNTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMFF035G15+          AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF010E22+          AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
                      ____________________________________________________________
consensus             AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
 
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rJMSF039B03+          TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF006G23+          TAAGGTTCCTGAAGGNTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMFF035G15+          TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF010E22+          TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
                      ____________________________________________________________
consensus             TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
 
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rJMSF039B03+          CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF006G23+          CGATGATGGAACCTGCACGTACCAGG                                  
rJMFF035G15+          CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF010E22+          CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
                      ____________________________________________________________
consensus             CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
 
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rJMSF039B03+          GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMFF035G15+          GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMSF010E22+          GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
                      ____________________________________________________________
consensus             GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
 
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rJMSF039B03+          GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMFF035G15+          GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMSF010E22+          GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
                      ____________________________________________________________
consensus             GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
 
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rJMSF039B03+          TAGAAGCTAAAGATTTGTCTTTTATGGACAAAAT                          
rJMFF035G15+          TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAA              
rJMSF010E22+          TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT
                      ____________________________________________________________
consensus             TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT