clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN028A12 | Sequence | 639 | 011406 (7) | gb:AY607764_1617545 | 2e-54 | Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds. | |||||
JMSF007O21 | Sequence | 242 | 011406 (7) | 683 | 011406 (7) | gb:AY607764_1617545 | 5e-39 | Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds. | |||
JMSF008O21 | Sequence | 680 | 011406 (7) | gb:AY607764_1617545 | 1e-38 | Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds. | |||||
JMSF010E05 | Sequence | 419 | 011406 (7) | gb:AY607764_1617545 | 7e-20 | Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds. | |||||
JMSF025B15 | Sequence | 554 | 019375 | 767 | 011406 (7) | gb:AY607764_1617545 | 2e-60 | Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds. | |||
JMSF037E17 | Sequence | 528 | 019936 | 765 | 011406 (7) | gb:AY607764_1617545 | 2e-65 | Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds. |
This contig is upended
. : . : . : . : . : . :
JMSF007O21- CTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
JMSF010E05- GGTCTTCCACCTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
JMFN028A12- CCCTCTCTCTCTCTCTCTCTCTCTGAG
____________________________________________________________
consensus GGTCTTCCACCTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
. : . : . : . : . : . :
JMSF007O21- TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
JMSF010E05- TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
JMFN028A12- TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
____________________________________________________________
consensus TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
. : . : . : . : . : . :
JMSF007O21- AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
JMSF010E05- AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
JMFN028A12- AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
____________________________________________________________
consensus AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
. : . : . : . : . : . :
JMSF007O21- TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
JMSF010E05- TAGTCNGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
JMFN028A12- TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
____________________________________________________________
consensus TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
. : . : . : . : . : . :
JMSF007O21- TCCGGCACCAGCCCCGG
JMSF010E05- TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGNTGG
JMFN028A12- TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
rJMSF037E17+ TCCGGCACCAGGCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
rJMSF025B15+ CAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
____________________________________________________________
consensus TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
. : . : . : . : . : . :
JMSF010E05- ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGNTGTGGAAACTTTCCAAAA
JMFN028A12- ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
rJMSF037E17+ ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
rJMSF025B15+ ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
____________________________________________________________
consensus ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
. : . : . : . : . : . :
JMSF010E05- CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
JMFN028A12- CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF037E17+ CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF025B15+ CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF008O21+ CCCAAAGACGATGCCTTCTC
rJMSF007O21+ GTGCCCAAAGACGATGCCTTCTC
____________________________________________________________
consensus CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
. : . : . : . : . : . :
JMSF010E05- CAAGAAA
JMFN028A12- CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF037E17+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF025B15+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF008O21+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF007O21+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
____________________________________________________________
consensus CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
. : . : . : . : . : . :
JMFN028A12- TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF037E17+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF025B15+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF008O21+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF007O21+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
____________________________________________________________
consensus TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
. : . : . : . : . : . :
JMFN028A12- TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF037E17+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF025B15+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF008O21+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF007O21+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
____________________________________________________________
consensus TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
. : . : . : . : . : . :
JMFN028A12- GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF037E17+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF025B15+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF008O21+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF007O21+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
____________________________________________________________
consensus GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
. : . : . : . : . : . :
JMFN028A12- TTACCCCGTTGC
rJMSF037E17+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF025B15+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF008O21+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF007O21+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
____________________________________________________________
consensus TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
. : . : . : . : . : . :
rJMSF037E17+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF025B15+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF008O21+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF007O21+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
____________________________________________________________
consensus AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
. : . : . : . : . : . :
rJMSF037E17+ TCCAGCTTCTGACAAAGCCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF025B15+ TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF008O21+ TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF007O21+ TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
____________________________________________________________
consensus TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
. : . : . : . : . : . :
rJMSF037E17+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF025B15+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF008O21+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF007O21+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
____________________________________________________________
consensus GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
. : . : . : . : . : . :
rJMSF037E17+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF025B15+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF008O21+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF007O21+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
____________________________________________________________
consensus ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
. : . : . : . : . : . :
rJMSF037E17+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCAT
rJMSF025B15+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
rJMSF008O21+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
rJMSF007O21+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
____________________________________________________________
consensus TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
. : . : . : . : . : . :
rJMSF025B15+ CAATATA
rJMSF008O21+ CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG
rJMSF007O21+ CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG
____________________________________________________________
consensus CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG