Previous Contig 011406: Sequence
BLAST Hits against nr-aa DB Show

clone	5'-sequence						3'-sequence
clone	Seq.	length	contig	BestHit	Evalue	description	length	contig	BestHit	Evalue	description
JMFN028A12	Sequence	639	011406 (7)	gb:AY607764_1617545	2e-54	Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds.
JMSF007O21	Sequence	242	011406 (7)				683	011406 (7)	gb:AY607764_1617545	5e-39	Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds.
JMSF008O21	Sequence						680	011406 (7)	gb:AY607764_1617545	1e-38	Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds.
JMSF010E05	Sequence	419	011406 (7)	gb:AY607764_1617545	7e-20	Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds.
JMSF025B15	Sequence	554	019375				767	011406 (7)	gb:AY607764_1617545	2e-60	Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds.
JMSF037E17	Sequence	528	019936				765	011406 (7)	gb:AY607764_1617545	2e-65	Populus alba x Populus tremula fasciclin-like AGP 12 (FLA12) mRNA, complete cds.
Alignment

This contig is upended


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JMSF007O21-                             CTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
JMSF010E05-                   GGTCTTCCACCTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
JMFN028A12-                                            CCCTCTCTCTCTCTCTCTCTCTCTGAG
                      ____________________________________________________________
consensus                     GGTCTTCCACCTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
 
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JMSF007O21-           TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
JMSF010E05-           TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
JMFN028A12-           TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
                      ____________________________________________________________
consensus             TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
 
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JMSF007O21-           AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
JMSF010E05-           AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
JMFN028A12-           AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
                      ____________________________________________________________
consensus             AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
 
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JMSF007O21-           TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
JMSF010E05-           TAGTCNGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
JMFN028A12-           TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
                      ____________________________________________________________
consensus             TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
 
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JMSF007O21-           TCCGGCACCAGCCCCGG                                           
JMSF010E05-           TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGNTGG
JMFN028A12-           TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
rJMSF037E17+          TCCGGCACCAGGCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
rJMSF025B15+                              CAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
                      ____________________________________________________________
consensus             TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
 
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JMSF010E05-           ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGNTGTGGAAACTTTCCAAAA
JMFN028A12-           ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
rJMSF037E17+          ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
rJMSF025B15+          ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
                      ____________________________________________________________
consensus             ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
 
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JMSF010E05-           CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
JMFN028A12-           CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF037E17+          CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF025B15+          CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF008O21+                                                  CCCAAAGACGATGCCTTCTC
rJMSF007O21+                                               GTGCCCAAAGACGATGCCTTCTC
                      ____________________________________________________________
consensus             CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
 
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JMSF010E05-           CAAGAAA                                                     
JMFN028A12-           CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF037E17+          CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF025B15+          CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF008O21+          CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF007O21+          CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
                      ____________________________________________________________
consensus             CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
 
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JMFN028A12-           TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF037E17+          TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF025B15+          TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF008O21+          TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF007O21+          TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
                      ____________________________________________________________
consensus             TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
 
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JMFN028A12-           TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF037E17+          TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF025B15+          TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF008O21+          TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF007O21+          TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
                      ____________________________________________________________
consensus             TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
 
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JMFN028A12-           GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF037E17+          GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF025B15+          GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF008O21+          GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF007O21+          GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
                      ____________________________________________________________
consensus             GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
 
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JMFN028A12-           TTACCCCGTTGC                                                
rJMSF037E17+          TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF025B15+          TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF008O21+          TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF007O21+          TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
                      ____________________________________________________________
consensus             TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
 
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rJMSF037E17+          AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF025B15+          AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF008O21+          AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF007O21+          AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
                      ____________________________________________________________
consensus             AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
 
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rJMSF037E17+          TCCAGCTTCTGACAAAGCCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF025B15+          TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF008O21+          TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF007O21+          TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
                      ____________________________________________________________
consensus             TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
 
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rJMSF037E17+          GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF025B15+          GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF008O21+          GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF007O21+          GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
                      ____________________________________________________________
consensus             GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
 
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rJMSF037E17+          ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF025B15+          ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF008O21+          ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF007O21+          ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
                      ____________________________________________________________
consensus             ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
 
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rJMSF037E17+          TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCAT               
rJMSF025B15+          TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
rJMSF008O21+          TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
rJMSF007O21+          TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
                      ____________________________________________________________
consensus             TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
 
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rJMSF025B15+          CAATATA                                                     
rJMSF008O21+          CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG
rJMSF007O21+          CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG
                      ____________________________________________________________
consensus             CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG
Previous Contig 011406: SequenceBLAST Hits against nr-aa DB Show

Alignment

Previous Contig 011406: Sequence
BLAST Hits against nr-aa DB Show
